HEADER HYDROLASE 26-NOV-21 7W46 TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS YJOB WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED ATPASE YJOB; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YJOB, BSU12420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762 KEYWDS AAA PROTEIN, CHAPERONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.DAHAL,E.KWON,D.Y.KIM REVDAT 2 29-NOV-23 7W46 1 REMARK REVDAT 1 19-OCT-22 7W46 0 JRNL AUTH E.KWON,P.DAHAL,D.Y.KIM JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL ANALYSIS SUGGEST THAT YJOB JRNL TITL 2 ATPASE IS A PUTATIVE SUBSTRATE-SPECIFIC MOLECULAR CHAPERONE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 56119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36191235 JRNL DOI 10.1073/PNAS.2207856119 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3051 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1220 - 6.5014 0.99 2793 142 0.1759 0.1987 REMARK 3 2 6.5014 - 5.1627 1.00 2721 137 0.1887 0.2186 REMARK 3 3 5.1627 - 4.5108 1.00 2674 139 0.1502 0.1694 REMARK 3 4 4.5108 - 4.0987 1.00 2649 165 0.1519 0.1862 REMARK 3 5 4.0987 - 3.8051 1.00 2712 132 0.1717 0.2176 REMARK 3 6 3.8051 - 3.5808 1.00 2636 143 0.1875 0.2538 REMARK 3 7 3.5808 - 3.4016 1.00 2660 126 0.1971 0.2141 REMARK 3 8 3.4016 - 3.2535 1.00 2677 128 0.1922 0.2183 REMARK 3 9 3.2535 - 3.1283 1.00 2630 131 0.2108 0.2771 REMARK 3 10 3.1283 - 3.0204 1.00 2677 130 0.2284 0.2712 REMARK 3 11 3.0204 - 2.9260 1.00 2652 137 0.2252 0.2638 REMARK 3 12 2.9260 - 2.8423 1.00 2610 136 0.2168 0.2893 REMARK 3 13 2.8423 - 2.7675 1.00 2639 146 0.2559 0.2962 REMARK 3 14 2.7675 - 2.7000 1.00 2625 148 0.2849 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300024327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7W42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (V/V) PEG 400, 2 M AMMONIUM REMARK 280 CITRATE/CITRIC ACID, 10 MM TCEP, PH 7.5, MICROBATCH, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 78.12950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.10809 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 100.92033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 78.12950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.10809 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 100.92033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 78.12950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.10809 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.92033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 78.12950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.10809 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.92033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 78.12950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.10809 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.92033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 78.12950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.10809 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 100.92033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.21618 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 201.84067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 90.21618 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 201.84067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 90.21618 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 201.84067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 90.21618 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 201.84067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 90.21618 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 201.84067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 90.21618 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 201.84067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 98270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 234.38850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 135.32426 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 270.64853 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 322 REMARK 465 MET A 323 REMARK 465 ASN A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 GLU A 405 REMARK 465 GLN A 406 REMARK 465 ARG A 407 REMARK 465 LYS A 408 REMARK 465 SER A 409 REMARK 465 GLN A 410 REMARK 465 ARG A 411 REMARK 465 GLY A 412 REMARK 465 SER A 413 REMARK 465 TRP A 414 REMARK 465 MET A 415 REMARK 465 GLU A 416 REMARK 465 ARG A 417 REMARK 465 ASN A 418 REMARK 465 LYS A 419 REMARK 465 VAL A 420 REMARK 465 GLY A 421 REMARK 465 PHE A 422 REMARK 465 HIS A 423 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 405 REMARK 465 GLN B 406 REMARK 465 ARG B 407 REMARK 465 LYS B 408 REMARK 465 SER B 409 REMARK 465 GLN B 410 REMARK 465 ARG B 411 REMARK 465 GLY B 412 REMARK 465 SER B 413 REMARK 465 TRP B 414 REMARK 465 MET B 415 REMARK 465 GLU B 416 REMARK 465 ARG B 417 REMARK 465 ASN B 418 REMARK 465 LYS B 419 REMARK 465 VAL B 420 REMARK 465 GLY B 421 REMARK 465 PHE B 422 REMARK 465 HIS B 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 245 O HOH A 501 1.80 REMARK 500 O ASP B 245 O HOH B 601 1.92 REMARK 500 OH TYR A 215 O HOH A 502 1.94 REMARK 500 O GLU B 92 O HOH B 602 1.95 REMARK 500 O HOH B 652 O HOH B 675 2.00 REMARK 500 O PRO B 338 O HOH B 603 2.02 REMARK 500 O LEU A 46 O HOH A 503 2.03 REMARK 500 O SER B 284 O HOH B 604 2.04 REMARK 500 O HOH A 562 O HOH A 564 2.05 REMARK 500 O HOH B 678 O HOH B 683 2.05 REMARK 500 O HOH B 679 O HOH B 685 2.08 REMARK 500 NZ LYS A 209 O HOH A 504 2.08 REMARK 500 O HOH A 563 O HOH A 573 2.09 REMARK 500 OG SER A 200 O HOH A 505 2.09 REMARK 500 OE1 GLU A 264 O HOH A 506 2.15 REMARK 500 OD1 ASP A 283 OG1 THR A 312 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 126 OH TYR B 122 2765 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 88 109.44 -57.70 REMARK 500 ILE A 103 -61.16 -94.56 REMARK 500 ASP A 216 71.29 49.65 REMARK 500 ASN A 231 20.36 -77.69 REMARK 500 GLU A 280 109.04 -57.15 REMARK 500 ASP A 281 76.77 48.74 REMARK 500 ILE A 282 -7.24 -59.66 REMARK 500 ILE A 318 -62.34 -96.18 REMARK 500 HIS A 394 65.78 -108.57 REMARK 500 TYR B 88 109.31 -47.08 REMARK 500 ILE B 103 -64.20 -93.05 REMARK 500 ASP B 245 65.70 -101.01 REMARK 500 GLU B 304 70.21 40.72 REMARK 500 ARG B 328 90.88 -171.03 REMARK 500 PHE B 329 76.91 65.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 328 PHE A 329 149.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 7W46 A 1 423 UNP O34703 YJOB_BACSU 1 423 DBREF 7W46 B 1 423 UNP O34703 YJOB_BACSU 1 423 SEQADV 7W46 GLY A -1 UNP O34703 EXPRESSION TAG SEQADV 7W46 SER A 0 UNP O34703 EXPRESSION TAG SEQADV 7W46 GLY B -1 UNP O34703 EXPRESSION TAG SEQADV 7W46 SER B 0 UNP O34703 EXPRESSION TAG SEQRES 1 A 425 GLY SER MET THR ASN ILE PRO PHE ILE TYR GLN TYR GLU SEQRES 2 A 425 GLU LYS GLU ASN GLU ARG ALA ALA ALA GLY TYR GLY THR SEQRES 3 A 425 PHE GLY TYR LEU ILE THR ARG ILE GLU GLU THR LEU TYR SEQRES 4 A 425 ASP GLN TYR GLY VAL PHE TYR GLU LEU TYR ALA SER ASP SEQRES 5 A 425 ASP PRO ASN THR GLU TYR TRP GLU LEU LEU VAL GLU ASP SEQRES 6 A 425 VAL ARG SER GLY SER LEU GLU PRO GLU HIS VAL ALA TYR SEQRES 7 A 425 ILE PHE GLU LYS LEU GLU LYS LYS THR PHE ALA TYR ASP SEQRES 8 A 425 GLU ASP GLU LYS GLU PRO ASP TYR THR VAL HIS LYS SER SEQRES 9 A 425 ILE ARG ASN SER VAL TYR ALA TYR PRO GLU LYS GLY VAL SEQRES 10 A 425 ALA PHE ALA ARG ILE PRO TYR PHE GLN ASP GLY SER ILE SEQRES 11 A 425 MET SER PHE ASP CYS LEU PHE ALA VAL ASN ASP GLU LYS SEQRES 12 A 425 MET ARG ALA PHE LEU GLU GLY VAL ARG PRO ARG LEU TRP SEQRES 13 A 425 GLU LYS SER LYS ARG LYS VAL THR VAL PHE THR ASP GLY SEQRES 14 A 425 ASP GLY GLY THR SER ARG GLU GLN GLU ALA ILE VAL ARG SEQRES 15 A 425 GLU VAL GLN ARG SER GLN VAL ILE MET ASN PRO LEU LEU SEQRES 16 A 425 LYS LYS GLU ILE TYR ARG SER ILE ASP GLN PHE PHE HIS SEQRES 17 A 425 SER ASP LYS SER PHE TYR GLN THR TYR ASP ILE PRO TYR SEQRES 18 A 425 LYS ARG GLY ILE LEU LEU TYR GLY PRO PRO GLY ASN GLY SEQRES 19 A 425 LYS THR THR LEU VAL LYS SER ILE ALA GLY SER ILE ASP SEQRES 20 A 425 ALA PRO VAL ALA TYR TRP GLN ILE THR GLU PHE THR SER SEQRES 21 A 425 SER GLU THR ILE GLU GLU VAL PHE GLN ALA ALA ARG ARG SEQRES 22 A 425 LEU ALA PRO ALA VAL LEU VAL ILE GLU ASP ILE ASP SER SEQRES 23 A 425 MET PRO GLU ASP VAL ARG SER PHE PHE LEU ASN THR LEU SEQRES 24 A 425 ASP GLY ALA THR SER LYS GLU GLY LEU PHE LEU ILE GLY SEQRES 25 A 425 THR THR ASN TYR PRO GLU GLU ILE ASP PRO GLY LEU MET SEQRES 26 A 425 ASN ARG ALA GLY ARG PHE ASP ARG ALA TYR GLU ILE GLY SEQRES 27 A 425 LEU PRO ASP GLU GLU LEU ARG LEU GLU TYR MET LYS MET SEQRES 28 A 425 ARG GLY PHE GLY ILE PHE LEU SER GLU GLY GLU ILE LYS SEQRES 29 A 425 ASN ALA ALA LYS LEU THR GLU GLY PHE SER PHE ALA GLN SEQRES 30 A 425 LEU GLY GLU LEU TYR VAL SER SER ALA LEU GLN TRP HIS SEQRES 31 A 425 GLN GLU GLY ASN HIS HIS ILE GLU THR MET VAL LYS ASP SEQRES 32 A 425 MET THR GLY GLU GLN ARG LYS SER GLN ARG GLY SER TRP SEQRES 33 A 425 MET GLU ARG ASN LYS VAL GLY PHE HIS SEQRES 1 B 425 GLY SER MET THR ASN ILE PRO PHE ILE TYR GLN TYR GLU SEQRES 2 B 425 GLU LYS GLU ASN GLU ARG ALA ALA ALA GLY TYR GLY THR SEQRES 3 B 425 PHE GLY TYR LEU ILE THR ARG ILE GLU GLU THR LEU TYR SEQRES 4 B 425 ASP GLN TYR GLY VAL PHE TYR GLU LEU TYR ALA SER ASP SEQRES 5 B 425 ASP PRO ASN THR GLU TYR TRP GLU LEU LEU VAL GLU ASP SEQRES 6 B 425 VAL ARG SER GLY SER LEU GLU PRO GLU HIS VAL ALA TYR SEQRES 7 B 425 ILE PHE GLU LYS LEU GLU LYS LYS THR PHE ALA TYR ASP SEQRES 8 B 425 GLU ASP GLU LYS GLU PRO ASP TYR THR VAL HIS LYS SER SEQRES 9 B 425 ILE ARG ASN SER VAL TYR ALA TYR PRO GLU LYS GLY VAL SEQRES 10 B 425 ALA PHE ALA ARG ILE PRO TYR PHE GLN ASP GLY SER ILE SEQRES 11 B 425 MET SER PHE ASP CYS LEU PHE ALA VAL ASN ASP GLU LYS SEQRES 12 B 425 MET ARG ALA PHE LEU GLU GLY VAL ARG PRO ARG LEU TRP SEQRES 13 B 425 GLU LYS SER LYS ARG LYS VAL THR VAL PHE THR ASP GLY SEQRES 14 B 425 ASP GLY GLY THR SER ARG GLU GLN GLU ALA ILE VAL ARG SEQRES 15 B 425 GLU VAL GLN ARG SER GLN VAL ILE MET ASN PRO LEU LEU SEQRES 16 B 425 LYS LYS GLU ILE TYR ARG SER ILE ASP GLN PHE PHE HIS SEQRES 17 B 425 SER ASP LYS SER PHE TYR GLN THR TYR ASP ILE PRO TYR SEQRES 18 B 425 LYS ARG GLY ILE LEU LEU TYR GLY PRO PRO GLY ASN GLY SEQRES 19 B 425 LYS THR THR LEU VAL LYS SER ILE ALA GLY SER ILE ASP SEQRES 20 B 425 ALA PRO VAL ALA TYR TRP GLN ILE THR GLU PHE THR SER SEQRES 21 B 425 SER GLU THR ILE GLU GLU VAL PHE GLN ALA ALA ARG ARG SEQRES 22 B 425 LEU ALA PRO ALA VAL LEU VAL ILE GLU ASP ILE ASP SER SEQRES 23 B 425 MET PRO GLU ASP VAL ARG SER PHE PHE LEU ASN THR LEU SEQRES 24 B 425 ASP GLY ALA THR SER LYS GLU GLY LEU PHE LEU ILE GLY SEQRES 25 B 425 THR THR ASN TYR PRO GLU GLU ILE ASP PRO GLY LEU MET SEQRES 26 B 425 ASN ARG ALA GLY ARG PHE ASP ARG ALA TYR GLU ILE GLY SEQRES 27 B 425 LEU PRO ASP GLU GLU LEU ARG LEU GLU TYR MET LYS MET SEQRES 28 B 425 ARG GLY PHE GLY ILE PHE LEU SER GLU GLY GLU ILE LYS SEQRES 29 B 425 ASN ALA ALA LYS LEU THR GLU GLY PHE SER PHE ALA GLN SEQRES 30 B 425 LEU GLY GLU LEU TYR VAL SER SER ALA LEU GLN TRP HIS SEQRES 31 B 425 GLN GLU GLY ASN HIS HIS ILE GLU THR MET VAL LYS ASP SEQRES 32 B 425 MET THR GLY GLU GLN ARG LYS SER GLN ARG GLY SER TRP SEQRES 33 B 425 MET GLU ARG ASN LYS VAL GLY PHE HIS HET ADP B 501 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *162(H2 O) HELIX 1 AA1 LYS A 13 ALA A 18 5 6 HELIX 2 AA2 GLY A 21 GLY A 41 1 21 HELIX 3 AA3 THR A 54 SER A 66 1 13 HELIX 4 AA4 ASN A 138 GLY A 148 1 11 HELIX 5 AA5 GLY A 148 ARG A 159 1 12 HELIX 6 AA6 GLN A 183 VAL A 187 5 5 HELIX 7 AA7 ASN A 190 HIS A 206 1 17 HELIX 8 AA8 LYS A 209 TYR A 215 1 7 HELIX 9 AA9 GLY A 232 GLY A 242 1 11 HELIX 10 AB1 SER A 258 LEU A 272 1 15 HELIX 11 AB2 ASP A 281 MET A 285 5 5 HELIX 12 AB3 PRO A 286 GLY A 299 1 14 HELIX 13 AB4 TYR A 314 ASP A 319 1 6 HELIX 14 AB5 ASP A 339 GLY A 351 1 13 HELIX 15 AB6 PHE A 352 PHE A 355 5 4 HELIX 16 AB7 SER A 357 THR A 368 1 12 HELIX 17 AB8 SER A 372 GLY A 391 1 20 HELIX 18 AB9 HIS A 394 GLY A 404 1 11 HELIX 19 AC1 GLU B 14 ALA B 18 5 5 HELIX 20 AC2 GLY B 21 GLY B 41 1 21 HELIX 21 AC3 THR B 54 SER B 66 1 13 HELIX 22 AC4 ASN B 138 GLY B 148 1 11 HELIX 23 AC5 GLY B 148 LYS B 158 1 11 HELIX 24 AC6 GLN B 183 VAL B 187 5 5 HELIX 25 AC7 ASN B 190 SER B 207 1 18 HELIX 26 AC8 LYS B 209 TYR B 215 1 7 HELIX 27 AC9 GLY B 232 ILE B 244 1 13 HELIX 28 AD1 SER B 258 LEU B 272 1 15 HELIX 29 AD2 ASP B 281 MET B 285 5 5 HELIX 30 AD3 PRO B 286 GLY B 299 1 14 HELIX 31 AD4 GLY B 299 GLU B 304 1 6 HELIX 32 AD5 TYR B 314 ILE B 318 5 5 HELIX 33 AD6 ASP B 319 MET B 323 5 5 HELIX 34 AD7 ASP B 339 GLY B 351 1 13 HELIX 35 AD8 PHE B 352 PHE B 355 5 4 HELIX 36 AD9 SER B 357 THR B 368 1 12 HELIX 37 AE1 SER B 372 GLY B 391 1 20 HELIX 38 AE2 HIS B 394 GLY B 404 1 11 SHEET 1 AA1 5 GLU A 45 ALA A 48 0 SHEET 2 AA1 5 SER A 127 ALA A 136 -1 O LEU A 134 N TYR A 47 SHEET 3 AA1 5 VAL A 115 GLN A 124 -1 N ALA A 116 O PHE A 135 SHEET 4 AA1 5 SER A 106 TYR A 110 -1 N TYR A 110 O VAL A 115 SHEET 5 AA1 5 GLU A 72 TYR A 76 -1 N VAL A 74 O VAL A 107 SHEET 1 AA2 2 LYS A 84 PHE A 86 0 SHEET 2 AA2 2 VAL A 99 LYS A 101 -1 O HIS A 100 N THR A 85 SHEET 1 AA3 7 THR A 171 ALA A 177 0 SHEET 2 AA3 7 LYS A 160 ASP A 166 -1 N VAL A 163 O GLU A 174 SHEET 3 AA3 7 VAL A 248 GLN A 252 1 O TYR A 250 N PHE A 164 SHEET 4 AA3 7 ALA A 275 GLU A 280 1 O VAL A 278 N ALA A 249 SHEET 5 AA3 7 LEU A 306 THR A 312 1 O ILE A 309 N ILE A 279 SHEET 6 AA3 7 ARG A 221 TYR A 226 1 N ARG A 221 O LEU A 308 SHEET 7 AA3 7 ARG A 331 GLU A 334 1 O TYR A 333 N LEU A 224 SHEET 1 AA4 5 GLU B 45 ALA B 48 0 SHEET 2 AA4 5 ILE B 128 ALA B 136 -1 O LEU B 134 N TYR B 47 SHEET 3 AA4 5 VAL B 115 PHE B 123 -1 N ALA B 116 O PHE B 135 SHEET 4 AA4 5 SER B 106 TYR B 110 -1 N TYR B 108 O PHE B 117 SHEET 5 AA4 5 GLU B 72 TYR B 76 -1 N VAL B 74 O VAL B 107 SHEET 1 AA5 2 LYS B 84 PHE B 86 0 SHEET 2 AA5 2 VAL B 99 LYS B 101 -1 O HIS B 100 N THR B 85 SHEET 1 AA6 7 THR B 171 GLU B 176 0 SHEET 2 AA6 7 VAL B 161 ASP B 166 -1 N VAL B 161 O GLU B 176 SHEET 3 AA6 7 VAL B 248 GLN B 252 1 O GLN B 252 N PHE B 164 SHEET 4 AA6 7 ALA B 275 ILE B 279 1 O VAL B 278 N ALA B 249 SHEET 5 AA6 7 LEU B 306 THR B 312 1 O ILE B 309 N ILE B 279 SHEET 6 AA6 7 LYS B 220 TYR B 226 1 N LEU B 225 O GLY B 310 SHEET 7 AA6 7 ARG B 331 GLU B 334 1 O TYR B 333 N LEU B 224 CISPEP 1 ALA A 273 PRO A 274 0 -5.07 CISPEP 2 ALA B 273 PRO B 274 0 -5.47 CRYST1 156.259 156.259 302.761 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006400 0.003695 0.000000 0.00000 SCALE2 0.000000 0.007390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003303 0.00000