HEADER CELL ADHESION 01-DEC-21 7W6B TITLE CRYSTAL STRUCTURE OF PITA FROM PILUS ISLET-2 OF STREPTOCOCCUS ORALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR TYPE A DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS ORALIS ATCC 35037; SOURCE 3 ORGANISM_TAXID: 655813; SOURCE 4 GENE: HMPREF8579_1184; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIP PILIN, ADHESIN, PITA; PI-2 PILUS; STREPTOCOCCUS ORALIS, KEYWDS 2 ISOPEPTIDE, CNAA FOLD, CNAB FOLD, VWFA FOLD, CELL ADHESION, DENTAL KEYWDS 3 PLAQUE, BIOFILM EXPDTA X-RAY DIFFRACTION AUTHOR R.K.YADAV,V.KRISHNAN REVDAT 3 29-NOV-23 7W6B 1 REMARK REVDAT 2 26-OCT-22 7W6B 1 JRNL REVDAT 1 01-JUN-22 7W6B 0 JRNL AUTH R.K.YADAV,V.KRISHNAN JRNL TITL NEW STRUCTURAL INSIGHTS INTO THE PI-2 PILUS FROM JRNL TITL 2 STREPTOCOCCUS ORALIS, AN EARLY DENTAL PLAQUE COLONIZER. JRNL REF FEBS J. V. 289 6342 2022 JRNL REFN ISSN 1742-464X JRNL PMID 35561142 JRNL DOI 10.1111/FEBS.16527 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 20771 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.142 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47800 REMARK 3 B22 (A**2) : -0.72900 REMARK 3 B33 (A**2) : -1.74900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.526 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.391 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.760 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.875 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.807 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5977 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8120 ; 1.558 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 781 ; 6.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;37.567 ;24.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 966 ;19.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.790 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4573 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2007 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3988 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.297 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3127 ; 4.041 ; 7.875 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3907 ; 6.931 ;11.809 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2850 ; 3.981 ; 7.438 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4213 ; 6.744 ;11.190 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 822 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7668 68.6396 -1.9585 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.0432 REMARK 3 T33: 0.1816 T12: 0.0196 REMARK 3 T13: -0.0436 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.0652 L22: 0.5496 REMARK 3 L33: 0.3904 L12: 0.1138 REMARK 3 L13: 0.0415 L23: 0.4045 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0326 S13: 0.0065 REMARK 3 S21: -0.0905 S22: 0.0172 S23: 0.1273 REMARK 3 S31: -0.0093 S32: 0.0464 S33: 0.0345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 7W6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300025856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.984 REMARK 200 RESOLUTION RANGE LOW (A) : 51.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7VCR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.8, 1 M POTASSIUM REMARK 280 IODIDE, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.13550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 211.46400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.13550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 211.46400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 36 REMARK 465 SER A 37 REMARK 465 THR A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 ASN A 823 REMARK 465 SER A 824 REMARK 465 VAL A 825 REMARK 465 PRO A 826 REMARK 465 GLU A 827 REMARK 465 THR A 828 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 65 CG1 CG2 CD1 REMARK 470 VAL A 80 CG1 CG2 REMARK 470 MET A 90 CG SD CE REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 THR A 102 OG1 CG2 REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 LEU A 134 CG CD1 CD2 REMARK 470 MET A 136 CG SD CE REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ILE A 143 CG1 CG2 CD1 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 VAL A 148 CG1 CG2 REMARK 470 TYR A 151 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 155 CG OD1 ND2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 TRP A 157 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 157 CZ3 CH2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 160 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 164 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 164 CZ3 CH2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 MET A 202 CG SD CE REMARK 470 ILE A 204 CG1 CG2 CD1 REMARK 470 ASN A 208 CG OD1 ND2 REMARK 470 SER A 209 OG REMARK 470 ILE A 210 CG1 CG2 CD1 REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 SER A 248 OG REMARK 470 PHE A 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 264 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 PRO A 271 CG CD REMARK 470 ASN A 272 CG OD1 ND2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 TRP A 279 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 279 CZ3 CH2 REMARK 470 TRP A 281 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 281 CZ3 CH2 REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 SER A 304 OG REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 PHE A 307 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 311 CG OD1 ND2 REMARK 470 VAL A 313 CG1 CG2 REMARK 470 ASP A 314 CG OD1 OD2 REMARK 470 SER A 315 OG REMARK 470 ILE A 334 CG1 CG2 CD1 REMARK 470 LEU A 343 CG CD1 CD2 REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 SER A 346 OG REMARK 470 PHE A 347 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 ILE A 354 CG1 CG2 CD1 REMARK 470 ASN A 468 ND2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 ASN A 707 ND2 REMARK 470 LEU A 727 CG CD1 CD2 REMARK 470 LYS A 728 CG CD CE NZ REMARK 470 GLU A 804 CG CD OE1 OE2 REMARK 470 ASN A 820 OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 47 OD1 ASN A 468 1.41 REMARK 500 NZ LYS A 47 CG ASN A 468 1.51 REMARK 500 NZ LYS A 717 CG ASN A 820 1.57 REMARK 500 NZ LYS A 611 CG ASN A 707 1.70 REMARK 500 CE LYS A 47 OD1 ASN A 468 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 585 CD GLU A 585 OE1 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 71 -136.30 -130.88 REMARK 500 ASP A 94 22.98 -140.37 REMARK 500 ASN A 117 71.88 53.65 REMARK 500 LYS A 120 98.55 -60.16 REMARK 500 ASP A 153 31.87 -98.06 REMARK 500 ASN A 155 -66.15 -139.71 REMARK 500 PHE A 160 -53.13 -120.63 REMARK 500 TYR A 172 -161.37 67.94 REMARK 500 ASN A 239 26.96 -143.04 REMARK 500 GLU A 453 -121.55 -94.70 REMARK 500 LYS A 464 52.29 -140.58 REMARK 500 SER A 482 -65.12 -106.40 REMARK 500 THR A 484 74.22 37.65 REMARK 500 ASP A 499 131.97 -29.76 REMARK 500 ALA A 581 -6.41 73.84 REMARK 500 ASN A 594 73.86 -151.53 REMARK 500 ASN A 617 -70.43 -133.36 REMARK 500 ASN A 620 45.48 -92.48 REMARK 500 PRO A 632 155.25 -49.61 REMARK 500 ASP A 633 7.02 81.09 REMARK 500 ASN A 692 51.09 36.87 REMARK 500 PRO A 711 157.41 -48.20 REMARK 500 LEU A 727 36.68 -80.36 REMARK 500 ASP A 738 -179.43 -63.04 REMARK 500 SER A 796 50.25 -90.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 SER A 87 OG 85.0 REMARK 620 3 SER A 89 OG 159.9 90.1 REMARK 620 4 ASP A 249 OD1 57.9 111.4 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 917 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 144 OD1 REMARK 620 2 ASP A 144 OD2 57.5 REMARK 620 3 SER A 177 O 127.1 73.0 REMARK 620 4 ASP A 180 OD1 145.7 153.5 80.5 REMARK 620 5 ASP A 180 OD2 116.8 120.7 72.2 46.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7VCR RELATED DB: PDB REMARK 900 CONTAINS C-TERMINAL FRAGMENT OF THE SAME PROTEIN REMARK 900 RELATED ID: 7VCN RELATED DB: PDB REMARK 900 CONTAINS C-TERMINAL FRAGMENT OF THE SAME PROTEIN WITH TB DBREF 7W6B A 36 828 UNP D4FSQ3 D4FSQ3_STROR 36 828 SEQRES 1 A 793 ASP SER THR THR GLU PRO GLN THR THR LEU HIS LYS THR SEQRES 2 A 793 ILE THR PRO ILE SER GLY GLN ASP ASP LYS TYR GLU LEU SEQRES 3 A 793 SER LEU ASP ILE THR SER LYS LEU GLY THR GLU THR GLN SEQRES 4 A 793 THR ASP PRO LEU ASP VAL VAL LEU VAL ALA ASP LEU SER SEQRES 5 A 793 GLY SER MET GLN ASN GLN ASP VAL GLN SER PHE ASP GLY SEQRES 6 A 793 ARG THR ILE SER ARG ILE ASP ALA LEU LYS ASN THR LEU SEQRES 7 A 793 ARG GLY THR ASN GLY ARG LYS GLY LEU ILE ASP THR ILE SEQRES 8 A 793 LEU SER ASN SER ASN ASN ARG LEU SER MET VAL GLY PHE SEQRES 9 A 793 GLY GLY LYS ILE ASP ASN LYS LYS VAL ASP GLN TYR TRP SEQRES 10 A 793 ASP GLY ASN LYS TRP ARG LEU PHE ARG PRO TYR TRP PRO SEQRES 11 A 793 TYR GLU ARG MET THR LYS TYR TYR ASP GLY VAL SER PRO SEQRES 12 A 793 TRP ASP ASP ALA ASN THR ILE LEU GLY TRP SER ASN ASN SEQRES 13 A 793 ALA ARG ALA ALA LYS THR ALA VAL TYR ASN MET SER ILE SEQRES 14 A 793 ALA GLY GLY ASN SER ILE GLY THR GLU SER GLY ILE GLY SEQRES 15 A 793 THR GLY THR ASN ILE GLY ALA GLY LEU THR LEU ALA ASN SEQRES 16 A 793 GLN LEU MET GLY SER ALA ARG SER ASN ALA LYS LYS VAL SEQRES 17 A 793 VAL ILE LEU LEU SER ASP GLY PHE ALA ASN MET VAL TYR SEQRES 18 A 793 ASP ALA ASN GLY TYR THR ILE TYR ASN TYR ASN ASN GLU SEQRES 19 A 793 ASP PRO ASN ILE GLU THR ALA PRO GLN TRP PHE TRP ASP SEQRES 20 A 793 ARG LEU ASN ASN ASN LEU ASN SER LEU SER TYR SER LEU SEQRES 21 A 793 ALA PRO THR LEU ASP GLY PHE TYR SER ILE LYS PHE ARG SEQRES 22 A 793 TYR SER ASN ASN VAL ASP SER ILE THR SER LEU GLN TYR SEQRES 23 A 793 TYR MET ARG GLN HIS ASN ALA SER ILE PRO ASN GLU ILE SEQRES 24 A 793 PHE SER ALA ASN ASP GLU ASP GLN LEU ARG ASP SER PHE SEQRES 25 A 793 LYS ASP ILE THR ASP LYS ILE LEU PRO LEU GLY ILE HIS SEQRES 26 A 793 HIS VAL SER ILE LYS ASP VAL LEU SER LYS TYR VAL GLN SEQRES 27 A 793 LEU LEU PRO ASN GLY SER SER GLU PHE ARG VAL VAL LYS SEQRES 28 A 793 GLU LYS ASP GLY SER SER GLU ILE LEU THR GLU ASN GLN SEQRES 29 A 793 VAL THR PHE ASP THR LYS THR THR SER GLU GLY LEU VAL SEQRES 30 A 793 GLU VAL THR ALA LYS PHE SER PRO ASN TYR SER LEU GLU SEQRES 31 A 793 ASP GLY ALA ARG TYR VAL LEU LYS PHE THR VAL THR SER SEQRES 32 A 793 SER GLN GLU ALA LEU ASP ALA ILE ALA GLY ASP LYS LYS SEQRES 33 A 793 LEU GLU ALA GLY ASP ALA GLU GLY SER ASP VAL ASN LYS SEQRES 34 A 793 LEU TYR SER ASN LYS GLY ALA SER VAL THR TYR SER TYR SEQRES 35 A 793 GLY ILE GLY ASN SER GLN THR LYS THR LYS GLU TYR SER SEQRES 36 A 793 ASP ASN PRO THR PHE LYS PRO SER ASP PRO LEU THR VAL SEQRES 37 A 793 PRO VAL GLU VAL GLU TRP GLN GLY VAL THR GLY ALA ARG SEQRES 38 A 793 THR VAL ILE THR ALA ASP GLN PRO SER ASN VAL GLU LEU SEQRES 39 A 793 LYS LEU VAL GLN LYS ASN LYS ASN GLY GLY SER ASP ASN SEQRES 40 A 793 GLN ASP TYR ARG LYS THR ASN VAL ASN VAL SER LYS ASN SEQRES 41 A 793 VAL SER ASN GLU THR ARG ASN PHE GLU LYS VAL ALA LYS SEQRES 42 A 793 GLY TYR GLN TYR ASP LEU ILE ALA PRO ASP VAL PRO ALA SEQRES 43 A 793 PHE THR LYS GLU ILE LYS ASN VAL GLY THR GLU SER ASN SEQRES 44 A 793 PRO SER PHE LYS VAL ILE TYR LYS GLN LEU PRO SER LEU SEQRES 45 A 793 THR ILE LYS LYS VAL LEU GLU ALA GLU ASN ASN LEU ASN SEQRES 46 A 793 LYS GLU PHE ARG ILE LYS VAL LYS LEU THR SER PRO ASP SEQRES 47 A 793 SER LYS PRO LEU ASN GLY THR PHE GLY GLU ILE THR VAL SEQRES 48 A 793 VAL ASN GLY GLU ALA GLU ILE ARG VAL GLU LYS ARG LYS SEQRES 49 A 793 ARG TRP ARG GLY ILE LEU SER TYR LEU PRO ARG GLY THR SEQRES 50 A 793 HIS TYR LYS VAL GLU GLU GLU ALA ALA SER THR ASN GLY SEQRES 51 A 793 TYR HIS VAL THR TYR GLU ASN GLN GLU GLY ASP LEU ASN SEQRES 52 A 793 LYS ASP GLU THR SER THR VAL THR ASN HIS LYS LEU PRO SEQRES 53 A 793 SER LEU SER VAL THR LYS LYS VAL THR GLY VAL PHE ALA SEQRES 54 A 793 ASN LEU LEU LYS SER PHE LYS ILE THR ILE ASN ILE ARG SEQRES 55 A 793 ASP ALA GLN ASN SER PRO LEU ASN GLY THR TYR THR ALA SEQRES 56 A 793 THR VAL ASN ASN LYS ARG THR PRO LEU GLN PHE THR ASN SEQRES 57 A 793 GLY ARG ALA SER ILE ASP LEU ASN LYS ASP GLN THR ILE SEQRES 58 A 793 LYS ILE ASP GLY LEU PRO LEU ASP SER HIS TYR THR VAL SEQRES 59 A 793 GLU GLU GLU THR ASN SER SER ARG GLY TYR GLN VAL SER SEQRES 60 A 793 TYR GLU ASN GLN GLU GLY LYS LEU ASP GLY ASP LYS SER SEQRES 61 A 793 ALA THR VAL THR ASN ASN LYS ASN SER VAL PRO GLU THR HET MG A 901 1 HET IOD A 902 1 HET IOD A 903 1 HET IOD A 904 1 HET IOD A 905 1 HET IOD A 906 1 HET IOD A 907 1 HET IOD A 908 1 HET IOD A 909 1 HET IOD A 910 1 HET IOD A 911 1 HET IOD A 912 1 HET IOD A 913 1 HET IOD A 914 1 HET IOD A 915 1 HET IOD A 916 1 HET CA A 917 1 HETNAM MG MAGNESIUM ION HETNAM IOD IODIDE ION HETNAM CA CALCIUM ION FORMUL 2 MG MG 2+ FORMUL 3 IOD 15(I 1-) FORMUL 18 CA CA 2+ FORMUL 19 HOH *31(H2 O) HELIX 1 AA1 SER A 87 ASN A 92 5 6 HELIX 2 AA2 SER A 104 GLY A 115 1 12 HELIX 3 AA3 GLY A 121 SER A 128 1 8 HELIX 4 AA4 ASN A 191 ASN A 201 1 11 HELIX 5 AA5 ASN A 221 SER A 235 1 15 HELIX 6 AA6 TYR A 266 GLU A 269 5 4 HELIX 7 AA7 PRO A 277 ALA A 296 1 20 HELIX 8 AA8 PRO A 297 LEU A 299 5 3 HELIX 9 AA9 SER A 315 ASN A 327 1 13 HELIX 10 AB1 ASP A 339 THR A 351 1 13 HELIX 11 AB2 SER A 439 GLY A 448 1 10 HELIX 12 AB3 ALA A 457 ASP A 461 5 5 HELIX 13 AB4 ARG A 658 ARG A 660 5 3 HELIX 14 AB5 ALA A 680 ASN A 684 5 5 HELIX 15 AB6 THR A 793 SER A 796 5 4 SHEET 1 AA1 4 GLN A 42 PRO A 51 0 SHEET 2 AA1 4 LYS A 58 LYS A 68 -1 O GLU A 60 N THR A 50 SHEET 3 AA1 4 ARG A 429 SER A 438 -1 O VAL A 436 N TYR A 59 SHEET 4 AA1 4 VAL A 372 LEU A 374 -1 N GLN A 373 O THR A 437 SHEET 1 AA2 5 GLN A 42 PRO A 51 0 SHEET 2 AA2 5 LYS A 58 LYS A 68 -1 O GLU A 60 N THR A 50 SHEET 3 AA2 5 ARG A 429 SER A 438 -1 O VAL A 436 N TYR A 59 SHEET 4 AA2 5 ARG A 383 LYS A 388 -1 N ARG A 383 O LYS A 433 SHEET 5 AA2 5 SER A 391 ILE A 394 -1 O GLU A 393 N LYS A 386 SHEET 1 AA3 6 ALA A 182 SER A 189 0 SHEET 2 AA3 6 ARG A 133 PHE A 139 -1 N LEU A 134 O SER A 189 SHEET 3 AA3 6 LEU A 78 ASP A 85 1 N ALA A 84 O VAL A 137 SHEET 4 AA3 6 LYS A 241 SER A 248 1 O ILE A 245 N VAL A 83 SHEET 5 AA3 6 GLY A 301 PHE A 307 1 O TYR A 303 N LEU A 246 SHEET 6 AA3 6 ASN A 332 ALA A 337 1 O PHE A 335 N SER A 304 SHEET 1 AA4 2 VAL A 95 GLN A 96 0 SHEET 2 AA4 2 THR A 102 ILE A 103 -1 O ILE A 103 N VAL A 95 SHEET 1 AA5 2 VAL A 148 TRP A 152 0 SHEET 2 AA5 2 TRP A 157 PRO A 162 -1 O PHE A 160 N ASP A 149 SHEET 1 AA6 2 MET A 254 TYR A 256 0 SHEET 2 AA6 2 THR A 262 TYR A 264 -1 O ILE A 263 N VAL A 255 SHEET 1 AA7 5 ASP A 403 THR A 406 0 SHEET 2 AA7 5 VAL A 412 LYS A 417 -1 O GLU A 413 N LYS A 405 SHEET 3 AA7 5 HIS A 360 LEU A 368 -1 N ILE A 364 O ALA A 416 SHEET 4 AA7 5 ASN A 468 SER A 476 -1 O SER A 472 N LYS A 365 SHEET 5 AA7 5 LYS A 485 GLU A 488 -1 O LYS A 487 N VAL A 473 SHEET 1 AA8 2 LEU A 465 TYR A 466 0 SHEET 2 AA8 2 THR A 494 PHE A 495 -1 O PHE A 495 N LEU A 465 SHEET 1 AA9 4 ASN A 558 VAL A 566 0 SHEET 2 AA9 4 LEU A 501 GLN A 510 -1 N LEU A 501 O VAL A 566 SHEET 3 AA9 4 PHE A 597 GLN A 603 1 O TYR A 601 N GLN A 510 SHEET 4 AA9 4 PHE A 582 ASN A 588 -1 N LYS A 587 O LYS A 598 SHEET 1 AB1 3 ASN A 542 ASN A 551 0 SHEET 2 AB1 3 ASN A 526 GLN A 533 -1 N LEU A 529 O THR A 548 SHEET 3 AB1 3 TYR A 572 ILE A 575 -1 O ASP A 573 N VAL A 532 SHEET 1 AB2 4 ARG A 662 LEU A 665 0 SHEET 2 AB2 4 LEU A 607 GLU A 614 -1 N LEU A 607 O LEU A 665 SHEET 3 AB2 4 GLU A 701 LYS A 709 1 O VAL A 705 N LYS A 610 SHEET 4 AB2 4 TYR A 686 GLU A 691 -1 N HIS A 687 O HIS A 708 SHEET 1 AB3 3 LYS A 635 PRO A 636 0 SHEET 2 AB3 3 GLU A 622 SER A 631 -1 N SER A 631 O LYS A 635 SHEET 3 AB3 3 GLU A 650 GLU A 656 -1 O ILE A 653 N ILE A 625 SHEET 1 AB4 4 LYS A 635 PRO A 636 0 SHEET 2 AB4 4 GLU A 622 SER A 631 -1 N SER A 631 O LYS A 635 SHEET 3 AB4 4 THR A 672 GLU A 678 -1 O HIS A 673 N THR A 630 SHEET 4 AB4 4 GLU A 694 LEU A 697 -1 O LEU A 697 N THR A 672 SHEET 1 AB5 2 GLY A 639 PHE A 641 0 SHEET 2 AB5 2 ILE A 644 VAL A 646 -1 O VAL A 646 N GLY A 639 SHEET 1 AB6 6 ARG A 756 PHE A 761 0 SHEET 2 AB6 6 GLY A 746 VAL A 752 -1 N GLY A 746 O PHE A 761 SHEET 3 AB6 6 GLN A 774 ASP A 779 -1 O ASP A 779 N THR A 749 SHEET 4 AB6 6 SER A 712 THR A 720 -1 N LEU A 713 O ILE A 778 SHEET 5 AB6 6 LYS A 814 ASN A 821 1 O ALA A 816 N SER A 714 SHEET 6 AB6 6 GLN A 800 GLU A 804 -1 N SER A 802 O THR A 819 SHEET 1 AB7 4 ARG A 765 LEU A 770 0 SHEET 2 AB7 4 PHE A 730 ARG A 737 -1 N ILE A 732 O ILE A 768 SHEET 3 AB7 4 SER A 785 GLU A 791 -1 O GLU A 790 N THR A 733 SHEET 4 AB7 4 GLU A 807 LEU A 810 -1 O LEU A 810 N SER A 785 LINK OD2 ASP A 85 MG MG A 901 1555 1555 2.84 LINK OG SER A 87 MG MG A 901 1555 1555 1.98 LINK OG SER A 89 MG MG A 901 1555 1555 2.49 LINK OD1 ASP A 144 CA CA A 917 1555 1555 2.44 LINK OD2 ASP A 144 CA CA A 917 1555 1555 2.14 LINK O SER A 177 CA CA A 917 1555 1555 2.47 LINK OD1 ASP A 180 CA CA A 917 1555 1555 1.91 LINK OD2 ASP A 180 CA CA A 917 1555 1555 3.03 LINK OD1 ASP A 249 MG MG A 901 1555 1555 1.86 CRYST1 52.271 422.928 48.391 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019131 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020665 0.00000