HEADER OXIDOREDUCTASE 02-DEC-21 7W6V TITLE CRYSTAL STRUCTURE OF A DICOBALT-SUBSTITUTED SMALL LACCASE AT 2.47 TITLE 2 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE COPPER OXIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: ATCC BAA-471 / A3(2) / M145; SOURCE 5 GENE: SCO6712; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI #1/H766; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1354003; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS COBALT-BINDING, METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,F.WU,W.WU,X.CHEN,S.FAN,P.YU,L.MAO REVDAT 3 29-NOV-23 7W6V 1 REMARK REVDAT 2 20-SEP-23 7W6V 1 JRNL REVDAT 1 09-NOV-22 7W6V 0 JRNL AUTH X.YANG,W.WU,X.CHEN,F.WU,S.FAN,P.YU,L.MAO JRNL TITL A VERSATILE ARTIFICIAL METALLOENZYME SCAFFOLD ENABLING JRNL TITL 2 DIRECT BIOELECTROCATALYSIS IN SOLUTION. JRNL REF SCI ADV V. 8 O3315 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36322668 JRNL DOI 10.1126/SCIADV.ABO3315 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.456 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7W6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 73.50 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 54.50 REMARK 200 R MERGE FOR SHELL (I) : 3.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V PEG 400, 2.0 M AMMONIUM REMARK 280 SULFATE, 100 MM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 89.01500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 89.01500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 89.01500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 89.01500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 89.01500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 89.01500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 89.01500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 89.01500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 89.01500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 44.50750 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 133.52250 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 44.50750 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 44.50750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.50750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 133.52250 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 44.50750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 133.52250 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 44.50750 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 133.52250 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 44.50750 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 133.52250 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 133.52250 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 44.50750 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 133.52250 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 44.50750 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 44.50750 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 44.50750 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 133.52250 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 44.50750 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 44.50750 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 133.52250 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 133.52250 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 133.52250 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 44.50750 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 133.52250 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 44.50750 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 133.52250 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 44.50750 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 44.50750 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 44.50750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 47 CD REMARK 480 ASP A 60 CG REMARK 480 GLU A 163 CD REMARK 480 GLU A 228 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 148 O HOH A 501 1.65 REMARK 500 O PRO A 147 O HOH A 502 1.85 REMARK 500 O HOH A 578 O HOH A 583 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 47 CG GLU A 47 CD 0.148 REMARK 500 GLU A 47 CD GLU A 47 OE2 0.420 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.131 REMARK 500 GLU A 163 CD GLU A 163 OE2 0.283 REMARK 500 GLU A 228 CG GLU A 228 CD 0.163 REMARK 500 GLU A 228 CD GLU A 228 OE1 -0.212 REMARK 500 GLU A 228 CD GLU A 228 OE2 0.851 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 47 OE1 - CD - OE2 ANGL. DEV. = 37.2 DEGREES REMARK 500 GLU A 47 CG - CD - OE2 ANGL. DEV. = -31.6 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 60 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU A 163 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 GLU A 163 CG - CD - OE1 ANGL. DEV. = -20.2 DEGREES REMARK 500 GLU A 228 CB - CG - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 GLU A 228 CG - CD - OE1 ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU A 228 CG - CD - OE2 ANGL. DEV. = -19.8 DEGREES REMARK 500 THR A 249 CA - CB - OG1 ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -15.03 -151.08 REMARK 500 VAL A 159 -27.54 -146.32 REMARK 500 ASP A 197 -132.72 55.96 REMARK 500 MET A 198 41.03 -99.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 228 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 586 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 104 NE2 REMARK 620 2 HIS A 156 NE2 90.8 REMARK 620 3 HOH A 568 O 132.2 132.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 158 NE2 REMARK 620 2 HIS A 236 NE2 112.3 REMARK 620 3 HIS A 287 NE2 110.9 3.9 REMARK 620 4 HOH A 568 O 107.2 32.7 36.3 REMARK 620 N 1 2 3 DBREF 7W6V A 37 314 UNP Q9XAL8 Q9XAL8_STRCO 37 314 SEQADV 7W6V ALA A 230 UNP Q9XAL8 TYR 230 CONFLICT SEQADV 7W6V ALA A 315 UNP Q9XAL8 EXPRESSION TAG SEQADV 7W6V ALA A 316 UNP Q9XAL8 EXPRESSION TAG SEQRES 1 A 280 ILE THR ALA ARG THR ALA PRO ALA GLY GLY GLU VAL ARG SEQRES 2 A 280 HIS LEU LYS MET TYR ALA GLU LYS LEU ALA ASP GLY GLN SEQRES 3 A 280 MET GLY TYR GLY PHE GLU LYS GLY LYS ALA SER VAL PRO SEQRES 4 A 280 GLY PRO LEU ILE GLU VAL ASN GLU GLY ASP THR LEU HIS SEQRES 5 A 280 ILE GLU PHE THR ASN THR MET ASP VAL ARG ALA SER LEU SEQRES 6 A 280 HIS VAL HIS GLY LEU ASP TYR GLU ILE SER SER ASP GLY SEQRES 7 A 280 THR ALA MET ASN LYS SER ASP VAL GLU PRO GLY GLY THR SEQRES 8 A 280 ARG THR TYR THR TRP ARG THR HIS LYS PRO GLY ARG ARG SEQRES 9 A 280 ASP ASP GLY THR TRP ARG PRO GLY SER ALA GLY TYR TRP SEQRES 10 A 280 HIS TYR HIS ASP HIS VAL VAL GLY THR GLU HIS GLY THR SEQRES 11 A 280 GLY GLY ILE ARG ASN GLY LEU TYR GLY PRO VAL ILE VAL SEQRES 12 A 280 ARG ARG LYS GLY ASP VAL LEU PRO ASP ALA THR HIS THR SEQRES 13 A 280 ILE VAL PHE ASN ASP MET THR ILE ASN ASN ARG LYS PRO SEQRES 14 A 280 HIS THR GLY PRO ASP PHE GLU ALA THR VAL GLY ASP ARG SEQRES 15 A 280 VAL GLU ILE VAL MET ILE THR HIS GLY GLU TYR ALA HIS SEQRES 16 A 280 THR PHE HIS MET HIS GLY HIS ARG TRP ALA ASP ASN ARG SEQRES 17 A 280 THR GLY ILE LEU THR GLY PRO ASP ASP PRO SER ARG VAL SEQRES 18 A 280 ILE ASP ASN LYS ILE THR GLY PRO ALA ASP SER PHE GLY SEQRES 19 A 280 PHE GLN ILE ILE ALA GLY GLU GLY VAL GLY ALA GLY ALA SEQRES 20 A 280 TRP MET TYR HIS CYS HIS VAL GLN SER HIS SER ASP MET SEQRES 21 A 280 GLY MET VAL GLY LEU PHE LEU VAL LYS LYS PRO ASP GLY SEQRES 22 A 280 THR ILE PRO GLY TYR ALA ALA HET CO A 401 1 HET CO A 402 1 HETNAM CO COBALT (II) ION FORMUL 2 CO 2(CO 2+) FORMUL 4 HOH *86(H2 O) HELIX 1 AA1 GLU A 109 ASP A 113 5 5 HELIX 2 AA2 GLY A 165 GLY A 172 1 8 HELIX 3 AA3 VAL A 290 GLY A 297 1 8 SHEET 1 AA1 4 MET A 63 GLY A 66 0 SHEET 2 AA1 4 VAL A 48 LYS A 57 -1 N GLU A 56 O GLY A 64 SHEET 3 AA1 4 THR A 86 ASN A 93 1 O GLU A 90 N LEU A 51 SHEET 4 AA1 4 THR A 127 ARG A 133 -1 O TYR A 130 N ILE A 89 SHEET 1 AA2 4 ILE A 79 ASN A 82 0 SHEET 2 AA2 4 TYR A 174 ARG A 180 1 O ILE A 178 N ILE A 79 SHEET 3 AA2 4 GLY A 151 HIS A 156 -1 N TRP A 153 O VAL A 177 SHEET 4 AA2 4 HIS A 102 VAL A 103 -1 N HIS A 102 O HIS A 156 SHEET 1 AA3 2 GLY A 138 ARG A 139 0 SHEET 2 AA3 2 TRP A 145 ARG A 146 -1 O ARG A 146 N GLY A 138 SHEET 1 AA4 4 THR A 199 ILE A 200 0 SHEET 2 AA4 4 ALA A 189 ASN A 196 -1 N ASN A 196 O THR A 199 SHEET 3 AA4 4 ARG A 218 HIS A 226 1 O HIS A 226 N PHE A 195 SHEET 4 AA4 4 SER A 268 ILE A 274 -1 O PHE A 269 N MET A 223 SHEET 1 AA5 5 PHE A 211 THR A 214 0 SHEET 2 AA5 5 VAL A 299 LYS A 305 1 O LEU A 303 N PHE A 211 SHEET 3 AA5 5 GLY A 282 CYS A 288 -1 N TRP A 284 O PHE A 302 SHEET 4 AA5 5 HIS A 231 MET A 235 -1 N HIS A 234 O HIS A 287 SHEET 5 AA5 5 ASN A 260 THR A 263 -1 O THR A 263 N HIS A 231 SHEET 1 AA6 2 TRP A 240 ALA A 241 0 SHEET 2 AA6 2 VAL A 257 ILE A 258 -1 O ILE A 258 N TRP A 240 LINK NE2 HIS A 104 CO CO A 402 1555 1555 2.10 LINK NE2 HIS A 156 CO CO A 402 1555 1555 2.06 LINK NE2 HIS A 158 CO CO A 401 1555 1555 1.89 LINK NE2 HIS A 236 CO CO A 401 1555 9555 2.09 LINK NE2 HIS A 287 CO CO A 401 1555 9555 2.02 LINK CO CO A 401 O HOH A 568 1555 1555 1.95 LINK CO CO A 402 O HOH A 568 1555 1555 2.00 CISPEP 1 VAL A 74 PRO A 75 0 2.49 CISPEP 2 GLY A 208 PRO A 209 0 7.13 CRYST1 178.030 178.030 178.030 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005617 0.00000 CONECT 516 2156 CONECT 935 2156 CONECT 953 2155 CONECT 2155 953 2224 CONECT 2156 516 935 2224 CONECT 2224 2155 2156 MASTER 473 0 2 3 21 0 0 6 2241 1 6 22 END