HEADER TRANSFERASE 06-DEC-21 7W7Y TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 ABL2-A5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABL1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHU,Z.M.ZHANG REVDAT 4 29-NOV-23 7W7Y 1 REMARK REVDAT 3 29-JUN-22 7W7Y 1 JRNL REVDAT 2 11-MAY-22 7W7Y 1 JRNL REVDAT 1 27-APR-22 7W7Y 0 JRNL AUTH P.CHEN,J.SUN,C.ZHU,G.TANG,W.WANG,M.XU,M.XIANG,C.J.ZHANG, JRNL AUTH 2 Z.M.ZHANG,L.GAO,S.Q.YAO JRNL TITL CELL-ACTIVE, REVERSIBLE, AND IRREVERSIBLE COVALENT JRNL TITL 2 INHIBITORS THAT SELECTIVELY TARGET THE CATALYTIC LYSINE OF JRNL TITL 3 BCR-ABL KINASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 03878 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 35438229 JRNL DOI 10.1002/ANIE.202203878 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.017 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9600 - 5.4223 1.00 2808 116 0.1857 0.1651 REMARK 3 2 5.4223 - 4.3052 1.00 2642 152 0.1493 0.1527 REMARK 3 3 4.3052 - 3.7613 1.00 2605 134 0.1438 0.1759 REMARK 3 4 3.7613 - 3.4176 1.00 2598 157 0.1612 0.1822 REMARK 3 5 3.4176 - 3.1727 1.00 2605 125 0.1769 0.1924 REMARK 3 6 3.1727 - 2.9857 1.00 2578 130 0.1909 0.2588 REMARK 3 7 2.9857 - 2.8362 1.00 2574 144 0.1896 0.2133 REMARK 3 8 2.8362 - 2.7128 1.00 2559 124 0.1920 0.2616 REMARK 3 9 2.7128 - 2.6083 1.00 2591 144 0.1826 0.2331 REMARK 3 10 2.6083 - 2.5183 1.00 2547 151 0.1991 0.2190 REMARK 3 11 2.5183 - 2.4396 1.00 2529 138 0.1930 0.2202 REMARK 3 12 2.4396 - 2.3699 1.00 2568 138 0.1927 0.2417 REMARK 3 13 2.3699 - 2.3075 1.00 2572 128 0.1915 0.2591 REMARK 3 14 2.3075 - 2.2512 1.00 2524 141 0.1922 0.2867 REMARK 3 15 2.2512 - 2.2001 1.00 2548 130 0.1975 0.2240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.021 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4475 REMARK 3 ANGLE : 1.125 6074 REMARK 3 CHIRALITY : 0.046 642 REMARK 3 PLANARITY : 0.005 761 REMARK 3 DIHEDRAL : 17.502 1628 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 232:292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.594 31.183 -20.540 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.2922 REMARK 3 T33: 0.3421 T12: -0.0198 REMARK 3 T13: -0.0346 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 3.2585 L22: 2.3781 REMARK 3 L33: 2.4060 L12: -1.0982 REMARK 3 L13: -0.1147 L23: 0.7568 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: -0.0198 S13: 0.1747 REMARK 3 S21: -0.3648 S22: -0.2145 S23: 0.3208 REMARK 3 S31: -0.0320 S32: -0.2845 S33: 0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 293:485 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.054 34.556 -10.969 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1432 REMARK 3 T33: 0.1464 T12: -0.0047 REMARK 3 T13: -0.0026 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8709 L22: 1.3973 REMARK 3 L33: 1.3735 L12: 0.0516 REMARK 3 L13: -0.0252 L23: 0.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.0867 S13: -0.1665 REMARK 3 S21: -0.0131 S22: -0.0495 S23: -0.0168 REMARK 3 S31: 0.0361 S32: 0.0093 S33: -0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 486:500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.539 29.065 4.507 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2163 REMARK 3 T33: 0.2663 T12: -0.0098 REMARK 3 T13: 0.0011 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 6.6919 L22: 5.9655 REMARK 3 L33: 8.5337 L12: -0.2461 REMARK 3 L13: 0.0215 L23: 0.9139 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: -0.8194 S13: -0.3859 REMARK 3 S21: 1.0063 S22: 0.0570 S23: 0.0252 REMARK 3 S31: 0.6876 S32: -0.2442 S33: 0.0924 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 232:300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.672 35.390 -55.029 REMARK 3 T TENSOR REMARK 3 T11: 0.7588 T22: 0.4067 REMARK 3 T33: 0.5163 T12: -0.0171 REMARK 3 T13: -0.0153 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 2.6495 L22: 1.7547 REMARK 3 L33: 2.2848 L12: 0.6307 REMARK 3 L13: -0.0217 L23: -0.9700 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: 0.6162 S13: 0.6328 REMARK 3 S21: -0.6024 S22: 0.0540 S23: -0.0321 REMARK 3 S31: -0.7215 S32: 0.0397 S33: 0.1255 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 301:356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.110 25.789 -44.142 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.2667 REMARK 3 T33: 0.2778 T12: 0.0057 REMARK 3 T13: -0.0023 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 2.2848 L22: 1.7677 REMARK 3 L33: 1.3771 L12: -0.1251 REMARK 3 L13: 0.4226 L23: 0.0879 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.1622 S13: 0.2389 REMARK 3 S21: -0.2136 S22: 0.0589 S23: -0.0907 REMARK 3 S31: -0.4050 S32: 0.1212 S33: 0.0524 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 357:400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.508 19.964 -51.742 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.3266 REMARK 3 T33: 0.2482 T12: 0.0158 REMARK 3 T13: -0.0236 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.5214 L22: 1.9259 REMARK 3 L33: 1.8764 L12: 0.5584 REMARK 3 L13: 0.8688 L23: 0.4341 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: 0.4709 S13: 0.1649 REMARK 3 S21: -0.3975 S22: 0.0933 S23: 0.0962 REMARK 3 S31: -0.2199 S32: 0.0780 S33: 0.0485 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 401:500 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.848 6.501 -45.068 REMARK 3 T TENSOR REMARK 3 T11: 0.1825 T22: 0.2512 REMARK 3 T33: 0.2449 T12: 0.0320 REMARK 3 T13: -0.0347 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 1.6209 L22: 2.2268 REMARK 3 L33: 1.2439 L12: -0.9693 REMARK 3 L13: -0.3850 L23: 0.3887 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: 0.1127 S13: -0.1480 REMARK 3 S21: -0.0907 S22: -0.0865 S23: 0.0969 REMARK 3 S31: 0.0359 S32: 0.0974 S33: -0.0356 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9876 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GQG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2 SO4, 0.1M HEPES (PH 7.0) REMARK 280 AND 4%(V/V) 1,3-PROPANEDIOL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.67400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.13750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.67400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.13750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 838 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 SER A 501 REMARK 465 ILE A 502 REMARK 465 SER A 503 REMARK 465 ASP A 504 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 ASP B 276 REMARK 465 THR B 277 REMARK 465 SER B 501 REMARK 465 ILE B 502 REMARK 465 SER B 503 REMARK 465 ASP B 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 THR A 277 OG1 CG2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 TYR B 232 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 234 CG CD CE NZ REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 GLU B 275 CG CD OE1 OE2 REMARK 470 MET B 278 CG SD CE REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 271 CBC 8IW B 601 1.30 REMARK 500 NZ LYS A 271 CBC 8IW A 601 1.53 REMARK 500 O HOH A 798 O HOH A 895 1.81 REMARK 500 O HOH A 908 O HOH A 919 1.91 REMARK 500 O HOH A 710 O HOH A 878 1.95 REMARK 500 O HOH B 711 O HOH B 819 1.99 REMARK 500 O1P PTR B 393 O HOH B 701 1.99 REMARK 500 O GLY A 249 O HOH A 701 2.00 REMARK 500 O LYS A 357 O HOH A 702 2.01 REMARK 500 O HOH A 875 O HOH A 894 2.03 REMARK 500 O HOH A 781 O HOH A 872 2.04 REMARK 500 O HOH B 833 O HOH B 855 2.04 REMARK 500 O HOH B 765 O HOH B 789 2.08 REMARK 500 O HOH A 828 O HOH A 886 2.10 REMARK 500 O HOH A 763 O HOH A 810 2.14 REMARK 500 OE2 GLU A 373 O HOH A 703 2.15 REMARK 500 OH TYR B 257 O HOH B 702 2.17 REMARK 500 SD MET A 351 O HOH A 884 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 822 O HOH A 822 2565 1.51 REMARK 500 O HOH A 794 O HOH A 847 2565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 276 109.70 -4.83 REMARK 500 THR A 277 -163.60 51.51 REMARK 500 ARG A 362 -5.33 79.50 REMARK 500 ASP A 363 45.45 -147.55 REMARK 500 ALA A 365 156.86 178.55 REMARK 500 LEU A 387 119.70 -160.61 REMARK 500 LYS B 245 -141.86 -119.22 REMARK 500 ASP B 363 43.60 -144.89 REMARK 500 ALA B 397 -109.12 12.30 REMARK 500 PRO B 402 94.72 -66.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 380 ASP A 381 -148.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 925 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 859 DISTANCE = 5.86 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 8IW A 601 REMARK 610 8IW B 601 DBREF 7W7Y A 229 504 UNP P00519 ABL1_HUMAN 229 504 DBREF 7W7Y B 229 504 UNP P00519 ABL1_HUMAN 229 504 SEQRES 1 A 276 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 A 276 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 A 276 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 A 276 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 A 276 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 A 276 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 A 276 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 A 276 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 A 276 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 A 276 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 A 276 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 A 276 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 A 276 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 A 276 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 A 276 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 A 276 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 A 276 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 A 276 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 A 276 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 A 276 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 A 276 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SER SEQRES 22 A 276 ILE SER ASP SEQRES 1 B 276 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 B 276 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 B 276 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 B 276 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 B 276 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 B 276 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 B 276 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 B 276 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 B 276 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 B 276 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 B 276 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 B 276 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 B 276 SER ARG LEU MET THR GLY ASP THR PTR THR ALA HIS ALA SEQRES 14 B 276 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 B 276 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 B 276 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 B 276 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 B 276 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 B 276 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 B 276 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 B 276 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SER SEQRES 22 B 276 ILE SER ASP MODRES 7W7Y PTR A 393 TYR MODIFIED RESIDUE MODRES 7W7Y PTR B 393 TYR MODIFIED RESIDUE HET PTR A 393 16 HET PTR B 393 16 HET 8IW A 601 30 HET 8IW B 601 30 HETNAM PTR O-PHOSPHOTYROSINE HETNAM 8IW 5-[3-(5-METHANOYL-2-METHOXY-4-OXIDANYL-PHENYL)-1~{H}- HETNAM 2 8IW PYRROLO[2,3-B]PYRIDIN-5-YL]-~{N},~{N}-DIMETHYL- HETNAM 3 8IW PYRIDINE-3-CARBOXAMIDE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 8IW 2(C23 H20 N4 O4) FORMUL 5 HOH *384(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 LYS A 263 SER A 265 5 3 HELIX 3 AA3 GLU A 279 LYS A 291 1 13 HELIX 4 AA4 ASN A 322 CYS A 330 1 9 HELIX 5 AA5 ASN A 336 ASN A 358 1 23 HELIX 6 AA6 ALA A 365 ARG A 367 5 3 HELIX 7 AA7 GLU A 373 HIS A 375 5 3 HELIX 8 AA8 PRO A 402 THR A 406 5 5 HELIX 9 AA9 ALA A 407 ASN A 414 1 8 HELIX 10 AB1 SER A 417 THR A 434 1 18 HELIX 11 AB2 ASP A 444 SER A 446 5 3 HELIX 12 AB3 GLN A 447 LYS A 454 1 8 HELIX 13 AB4 PRO A 465 TRP A 476 1 12 HELIX 14 AB5 ASN A 479 ARG A 483 5 5 HELIX 15 AB6 SER A 485 GLU A 499 1 15 HELIX 16 AB7 GLU B 238 THR B 240 5 3 HELIX 17 AB8 GLY B 249 GLN B 252 5 4 HELIX 18 AB9 GLU B 279 LYS B 291 1 13 HELIX 19 AC1 ASN B 322 CYS B 330 1 9 HELIX 20 AC2 ASN B 336 LYS B 357 1 22 HELIX 21 AC3 ALA B 365 ARG B 367 5 3 HELIX 22 AC4 GLU B 373 HIS B 375 5 3 HELIX 23 AC5 PRO B 402 THR B 406 5 5 HELIX 24 AC6 ALA B 407 ASN B 414 1 8 HELIX 25 AC7 SER B 417 THR B 434 1 18 HELIX 26 AC8 ASP B 444 SER B 446 5 3 HELIX 27 AC9 GLN B 447 LYS B 454 1 8 HELIX 28 AD1 PRO B 465 TRP B 476 1 12 HELIX 29 AD2 ASN B 479 ARG B 483 5 5 HELIX 30 AD3 SER B 485 SER B 500 1 16 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O GLU A 258 N HIS A 246 SHEET 3 AA1 5 LEU A 266 THR A 272 -1 O LEU A 266 N TRP A 261 SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O ILE A 313 N LYS A 271 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 2 PHE A 359 ILE A 360 0 SHEET 2 AA2 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA3 2 CYS A 369 VAL A 371 0 SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA4 2 PTR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N PTR A 393 SHEET 1 AA5 5 ILE B 242 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 TRP B 261 -1 O GLU B 258 N HIS B 246 SHEET 3 AA5 5 LEU B 266 LEU B 273 -1 O VAL B 268 N GLY B 259 SHEET 4 AA5 5 PHE B 311 GLU B 316 -1 O THR B 315 N ALA B 269 SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N LEU B 302 O ILE B 314 SHEET 1 AA6 2 PHE B 359 ILE B 360 0 SHEET 2 AA6 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA7 2 CYS B 369 VAL B 371 0 SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA8 2 PTR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N PTR B 393 LINK C THR A 392 N PTR A 393 1555 1555 1.33 LINK C PTR A 393 N THR A 394 1555 1555 1.33 LINK C THR B 392 N PTR B 393 1555 1555 1.33 LINK C PTR B 393 N THR B 394 1555 1555 1.33 CISPEP 1 GLY A 249 GLY A 250 0 -0.84 CISPEP 2 ASP A 276 THR A 277 0 6.05 CISPEP 3 PRO A 309 PRO A 310 0 -1.71 CISPEP 4 LYS A 357 ASN A 358 0 -5.82 CISPEP 5 TYR B 253 GLY B 254 0 -6.58 CISPEP 6 PRO B 309 PRO B 310 0 -0.80 CISPEP 7 GLY B 390 ASP B 391 0 -2.19 CISPEP 8 ALA B 397 GLY B 398 0 10.48 CRYST1 56.519 105.348 132.275 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017693 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007560 0.00000