HEADER PEPTIDE BINDING PROTEIN 08-DEC-21 7W8R TITLE SOLUTION STRUCTURES OF A DISULFIDE-RICH PEPTIDE THAT CAN BIND MDM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DRP2-B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DISULFIDE-RICH PEPTIDE, MDM2, ALPHA HELIX, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.H.FAN,Y.P.WU,C.L.WU REVDAT 3 14-JUN-23 7W8R 1 REMARK REVDAT 2 03-AUG-22 7W8R 1 JRNL REVDAT 1 08-JUN-22 7W8R 0 JRNL AUTH Y.WU,S.FAN,M.DONG,J.LI,C.KONG,J.ZHUANG,X.MENG,S.LU,Y.ZHAO, JRNL AUTH 2 C.WU JRNL TITL STRUCTURE-GUIDED DESIGN OF CPPC-PAIRED DISULFIDE-RICH JRNL TITL 2 PEPTIDE LIBRARIES FOR LIGAND AND DRUG DISCOVERY. JRNL REF CHEM SCI V. 13 7780 2022 JRNL REFN ISSN 2041-6520 JRNL PMID 35865895 JRNL DOI 10.1039/D2SC00924B REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026214. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM DRP2-B, 40% PERDEUTERATED REMARK 210 ACETONITRILE AND 60% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRFAM-SPARKY, NMRPIPE, REMARK 210 NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 9 -153.63 -146.76 REMARK 500 1 GLU A 12 -150.55 58.88 REMARK 500 2 HIS A 9 -154.55 -133.86 REMARK 500 2 GLU A 12 -155.44 65.15 REMARK 500 3 GLU A 6 99.54 -65.21 REMARK 500 3 GLU A 12 -159.81 60.89 REMARK 500 4 GLU A 12 -162.35 58.87 REMARK 500 5 HIS A 9 -154.59 -137.07 REMARK 500 5 GLU A 12 -155.20 57.73 REMARK 500 7 HIS A 9 -155.00 -147.35 REMARK 500 7 GLU A 12 -153.35 59.41 REMARK 500 8 GLU A 12 -159.90 53.11 REMARK 500 9 GLU A 12 177.46 62.21 REMARK 500 9 THR A 14 41.60 -101.01 REMARK 500 10 HIS A 9 -157.74 -137.78 REMARK 500 10 GLU A 12 -160.20 53.64 REMARK 500 11 GLU A 12 -153.87 43.27 REMARK 500 12 GLU A 6 99.21 -66.13 REMARK 500 12 GLU A 12 -155.85 54.80 REMARK 500 13 GLU A 6 97.76 -68.99 REMARK 500 13 HIS A 9 -168.73 -123.76 REMARK 500 13 GLU A 12 -155.35 51.89 REMARK 500 13 THR A 14 -43.04 -152.26 REMARK 500 14 GLU A 6 99.82 -69.72 REMARK 500 14 HIS A 9 -53.98 -148.35 REMARK 500 14 SER A 10 -48.18 -151.87 REMARK 500 14 GLU A 12 -146.90 49.31 REMARK 500 15 HIS A 9 -153.12 -158.17 REMARK 500 15 GLU A 12 -159.18 52.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36459 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURES OF A DISULFIDE-RICH PEPTIDE THAT CAN BIND MDM2 DBREF 7W8R A 1 26 PDB 7W8R 7W8R 1 26 SEQRES 1 A 26 GLY CYS PRO PRO CYS GLU SER CYS HIS SER GLY GLU SER SEQRES 2 A 26 THR PHE TRP CYS TYR TRP GLU ALA LEU CYS PRO PRO CYS HELIX 1 AA1 THR A 14 GLU A 20 1 7 SSBOND 1 CYS A 2 CYS A 26 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 23 1555 1555 2.03 SSBOND 3 CYS A 8 CYS A 17 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1