HEADER TRANSFERASE/RNA 10-DEC-21 7W9S TITLE CRYSTAL STRUCTURE OF THE ENTEROVIRUS 71 POLYMERASE ELONGATION COMPLEX TITLE 2 (C1S3 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (35-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'- COMPND 13 R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*CP*U)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROVIRUS A71; SOURCE 3 ORGANISM_TAXID: 39054; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PCG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE-RNA COMPLEX, ELONGATION, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.WANG,P.GONG REVDAT 4 29-NOV-23 7W9S 1 REMARK REVDAT 3 04-JAN-23 7W9S 1 JRNL REVDAT 2 21-DEC-22 7W9S 1 JRNL REVDAT 1 16-NOV-22 7W9S 0 JRNL AUTH R.LI,M.WANG,P.GONG JRNL TITL CRYSTAL STRUCTURE OF A PRE-CHEMISTRY VIRAL RNA-DEPENDENT RNA JRNL TITL 2 POLYMERASE SUGGESTS PARTICIPATION OF TWO BASIC RESIDUES IN JRNL TITL 3 CATALYSIS. JRNL REF NUCLEIC ACIDS RES. V. 50 12389 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36477355 JRNL DOI 10.1093/NAR/GKAC1133 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 24670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9350 - 5.2606 0.92 2678 135 0.1856 0.2213 REMARK 3 2 5.2606 - 4.1763 0.91 2485 157 0.1690 0.1851 REMARK 3 3 4.1763 - 3.6486 0.95 2603 135 0.1735 0.2248 REMARK 3 4 3.6486 - 3.3151 0.97 2629 161 0.2163 0.2588 REMARK 3 5 3.3151 - 3.0776 0.96 2592 134 0.2356 0.3247 REMARK 3 6 3.0776 - 2.8961 0.98 2653 142 0.2478 0.3152 REMARK 3 7 2.8961 - 2.7511 0.98 2630 132 0.2708 0.3405 REMARK 3 8 2.7511 - 2.6314 0.98 2630 134 0.2710 0.3342 REMARK 3 9 2.6314 - 2.5301 0.94 2493 147 0.3039 0.3584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4174 REMARK 3 ANGLE : 1.010 5799 REMARK 3 CHIRALITY : 0.057 668 REMARK 3 PLANARITY : 0.007 653 REMARK 3 DIHEDRAL : 12.835 2393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300023473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M MES PH 6.5, 25.5 % (W/V) PEG REMARK 280 5000 MONOMETHYL ETHER, 15 %(V/V) GLYCEROL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.99600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.41550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.83150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.41550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.99600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.83150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 G B 581 REMARK 465 G B 582 REMARK 465 G B 583 REMARK 465 A B 584 REMARK 465 G B 585 REMARK 465 A B 586 REMARK 465 U B 587 REMARK 465 G B 588 REMARK 465 A B 589 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 U B 595 REMARK 465 C B 596 REMARK 465 C B 597 REMARK 465 A B 598 REMARK 465 C B 611 REMARK 465 G B 612 REMARK 465 A B 613 REMARK 465 A B 614 REMARK 465 A B 615 REMARK 465 U C 686 REMARK 465 G C 687 REMARK 465 U C 688 REMARK 465 U C 689 REMARK 465 C C 690 REMARK 465 G C 691 REMARK 465 C C 702 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 ASN A 18 CG OD1 ND2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 HIS A 44 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 45 OG REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 VAL A 52 CG1 CG2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 HIS A 113 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 SER A 133 OG REMARK 470 THR A 134 OG1 CG2 REMARK 470 THR A 135 OG1 CG2 REMARK 470 SER A 139 OG REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ASP A 340 CG OD1 OD2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 GLU A 452 CG CD OE1 OE2 REMARK 470 ARG A 456 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 U B 610 N6 A C 692 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 -73.28 -110.05 REMARK 500 LEU A 107 104.14 -160.73 REMARK 500 LEU A 225 68.83 -118.21 REMARK 500 ARG A 277 -111.26 60.90 REMARK 500 ASP A 359 -1.99 -53.20 REMARK 500 LYS A 360 19.18 58.55 REMARK 500 LYS A 376 -11.75 73.04 REMARK 500 ASP A 407 109.64 -163.23 REMARK 500 PHE A 462 45.05 -101.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 232 ASP A 233 149.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 233 OD1 REMARK 620 2 ASP A 329 OD1 100.0 REMARK 620 3 ASP A 330 OD2 79.1 83.7 REMARK 620 4 CTP A 501 O1A 99.7 88.0 171.3 REMARK 620 5 A C 701 O3' 153.6 67.3 76.6 102.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 233 OD2 REMARK 620 2 TYR A 234 O 78.8 REMARK 620 3 ASP A 329 OD2 91.2 98.6 REMARK 620 4 CTP A 501 O1A 97.2 166.9 93.9 REMARK 620 5 CTP A 501 O2B 162.4 96.2 106.2 83.9 REMARK 620 6 CTP A 501 O2G 87.4 91.5 169.4 75.8 75.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 NE2 REMARK 620 2 HIS A 273 NE2 113.7 REMARK 620 3 CYS A 282 SG 105.4 111.0 REMARK 620 4 GLU A 343 OE2 63.9 126.1 41.5 REMARK 620 N 1 2 3 DBREF 7W9S A 1 462 UNP E5RPG3 E5RPG3_HE71 1732 2193 DBREF 7W9S B 581 615 PDB 7W9S 7W9S 581 615 DBREF 7W9S C 686 702 PDB 7W9S 7W9S 686 702 SEQADV 7W9S MET A 291 UNP E5RPG3 CYS 2022 ENGINEERED MUTATION SEQADV 7W9S HIS A 463 UNP E5RPG3 EXPRESSION TAG SEQADV 7W9S HIS A 464 UNP E5RPG3 EXPRESSION TAG SEQADV 7W9S HIS A 465 UNP E5RPG3 EXPRESSION TAG SEQADV 7W9S HIS A 466 UNP E5RPG3 EXPRESSION TAG SEQADV 7W9S HIS A 467 UNP E5RPG3 EXPRESSION TAG SEQADV 7W9S HIS A 468 UNP E5RPG3 EXPRESSION TAG SEQRES 1 A 468 GLY GLU ILE GLN TRP VAL LYS PRO ASN LYS GLU THR GLY SEQRES 2 A 468 ARG LEU ASN ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 A 468 PRO SER VAL PHE HIS ASP VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 468 PRO ALA VAL LEU HIS SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 A 468 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 468 THR LEU TYR GLU PRO ASP GLU TYR ILE LYS GLU ALA ALA SEQRES 7 A 468 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU ASP ILE ASP SEQRES 8 A 468 THR SER GLN MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 A 468 GLU ASN LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 A 468 TYR PRO TYR SER ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 468 LEU ASP SER THR THR ARG ASP VAL SER LYS MET LYS PHE SEQRES 12 A 468 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 A 468 TYR VAL LYS ASP GLU LEU ARG SER ILE ASP LYS ILE LYS SEQRES 14 A 468 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 468 ASP SER VAL TYR LEU ARG MET THR PHE GLY HIS LEU TYR SEQRES 16 A 468 GLU THR PHE HIS ALA ASN PRO GLY THR VAL THR GLY SER SEQRES 17 A 468 ALA VAL GLY CYS ASN PRO ASP THR PHE TRP SER LYS LEU SEQRES 18 A 468 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 A 468 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 A 468 ALA LEU GLU LEU VAL LEU ARG GLU ILE GLY TYR SER GLU SEQRES 21 A 468 GLU ALA VAL SER LEU VAL GLU GLY ILE ASN HIS THR HIS SEQRES 22 A 468 HIS VAL TYR ARG ASN LYS THR TYR CYS VAL LEU GLY GLY SEQRES 23 A 468 MET PRO SER GLY MET SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 468 MET ILE ASN ASN ILE ILE ILE ARG ALA LEU LEU ILE LYS SEQRES 25 A 468 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU ASN MET VAL SEQRES 26 A 468 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 A 468 ILE ASP CYS LEU GLU LEU ALA ARG THR GLY LYS GLU TYR SEQRES 28 A 468 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 A 468 ASN GLU VAL ASN TRP ASP ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 468 GLY PHE LEU PRO ASP GLU GLN PHE PRO PHE LEU ILE HIS SEQRES 31 A 468 PRO THR MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG SEQRES 32 A 468 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 468 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLN GLU SEQRES 34 A 468 TYR GLU LYS PHE VAL SER ALA ILE ARG SER VAL PRO VAL SEQRES 35 A 468 GLY LYS ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 A 468 ARG ASN TRP LEU GLU LEU PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 35 G G G A G A U G A A A G U SEQRES 2 B 35 C U C C A G G U C U C U C SEQRES 3 B 35 U C G U C G A A A SEQRES 1 C 17 U G U U C G A C G A G A G SEQRES 2 C 17 A G A C HET CTP A 501 29 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET ZN A 505 1 HET MG A 506 1 HET MG A 507 1 HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 4 CTP C9 H16 N3 O14 P3 FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 ZN ZN 2+ FORMUL 9 MG 2(MG 2+) FORMUL 11 HOH *16(H2 O) HELIX 1 AA1 ASN A 9 GLY A 13 1 5 HELIX 2 AA2 ASP A 53 PHE A 59 1 7 HELIX 3 AA3 SER A 60 TYR A 62 5 3 HELIX 4 AA4 ASP A 71 GLN A 87 1 17 HELIX 5 AA5 SER A 96 GLY A 103 1 8 HELIX 6 AA6 PRO A 119 GLY A 124 1 6 HELIX 7 AA7 LYS A 126 ILE A 130 5 5 HELIX 8 AA8 VAL A 138 GLY A 149 1 12 HELIX 9 AA9 ILE A 165 LYS A 170 1 6 HELIX 10 AB1 SER A 180 ASN A 201 1 22 HELIX 11 AB2 ASN A 213 LEU A 225 1 13 HELIX 12 AB3 GLY A 236 LEU A 241 1 6 HELIX 13 AB4 SER A 242 GLY A 257 1 16 HELIX 14 AB5 SER A 259 SER A 264 1 6 HELIX 15 AB6 SER A 264 ASN A 270 1 7 HELIX 16 AB7 GLY A 293 PHE A 314 1 22 HELIX 17 AB8 ASP A 318 LEU A 322 5 5 HELIX 18 AB9 ASP A 340 TYR A 351 1 12 HELIX 19 AC1 PRO A 394 ARG A 403 1 10 HELIX 20 AC2 ASP A 407 ARG A 409 5 3 HELIX 21 AC3 ASN A 410 TRP A 423 1 14 HELIX 22 AC4 GLY A 426 ARG A 438 1 13 HELIX 23 AC5 SER A 439 LEU A 446 5 8 HELIX 24 AC6 ASN A 450 LEU A 461 1 12 SHEET 1 AA1 5 GLU A 2 PRO A 8 0 SHEET 2 AA1 5 LYS A 279 LEU A 284 -1 O THR A 280 N LYS A 7 SHEET 3 AA1 5 HIS A 271 TYR A 276 -1 N THR A 272 O VAL A 283 SHEET 4 AA1 5 TYR A 154 VAL A 158 1 N THR A 156 O VAL A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ALA A 178 N SER A 155 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 LYS A 38 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 SER A 164 -1 O ARG A 163 N GLU A 39 SHEET 1 AA4 4 ASN A 323 TYR A 327 0 SHEET 2 AA4 4 ASP A 330 TYR A 335 -1 O SER A 334 N ASN A 323 SHEET 3 AA4 4 SER A 228 TYR A 234 -1 N PHE A 230 O ALA A 333 SHEET 4 AA4 4 MET A 355 THR A 356 -1 O THR A 356 N ASP A 233 SHEET 1 AA5 2 GLY A 378 PRO A 381 0 SHEET 2 AA5 2 ILE A 389 THR A 392 -1 O HIS A 390 N LEU A 380 LINK OD1 ASP A 233 MG MG A 506 1555 1555 2.44 LINK OD2 ASP A 233 MG MG A 507 1555 1555 2.26 LINK O TYR A 234 MG MG A 507 1555 1555 2.11 LINK NE2 HIS A 271 ZN ZN A 505 1555 1555 2.19 LINK NE2 HIS A 273 ZN ZN A 505 1555 1555 2.13 LINK SG CYS A 282 ZN ZN A 505 1555 1555 2.20 LINK OD1 ASP A 329 MG MG A 506 1555 1555 2.39 LINK OD2 ASP A 329 MG MG A 507 1555 1555 2.18 LINK OD2 ASP A 330 MG MG A 506 1555 1555 2.08 LINK OE2 GLU A 343 ZN ZN A 505 1555 4545 2.10 LINK O1A CTP A 501 MG MG A 506 1555 1555 2.52 LINK O1A CTP A 501 MG MG A 507 1555 1555 2.32 LINK O2B CTP A 501 MG MG A 507 1555 1555 1.96 LINK O2G CTP A 501 MG MG A 507 1555 1555 2.57 LINK MG MG A 506 O3' A C 701 1555 1555 2.62 CISPEP 1 TYR A 118 PRO A 119 0 -3.28 CRYST1 63.992 77.663 150.831 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006630 0.00000