HEADER TRANSFERASE 14-DEC-21 7WAR TITLE SBSOMT IN COMPLEX WITH PINOSTILBENE AND NICOTINAMIDE ADENINE TITLE 2 DINUCLEOTIDE(NAD+) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STILBENE O-METHYLTRANSFERASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 ORGANISM_TAXID: 4558; SOURCE 5 GENE: SORBI_3007G059100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3) RIL KEYWDS PINOSTILBENE, COMPLEX, O-METHYLTRANSFERASE, SUBSTRATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.POW,Q.HAO REVDAT 5 06-NOV-24 7WAR 1 REMARK REVDAT 4 29-NOV-23 7WAR 1 REMARK REVDAT 3 21-JUN-23 7WAR 1 JRNL REVDAT 2 25-JAN-23 7WAR 1 TITLE JRNL REVDAT 1 21-DEC-22 7WAR 0 JRNL AUTH A.C.W.LUI,K.C.POW,N.LIN,L.P.Y.LAM,G.LIU,I.D.GODWIN,Z.FAN, JRNL AUTH 2 C.J.KHOO,Y.TOBIMATSU,L.WANG,Q.HAO,C.LO JRNL TITL REGIOSELECTIVE STILBENE O-METHYLATIONS IN SACCHARINAE JRNL TITL 2 GRASSES. JRNL REF NAT COMMUN V. 14 3462 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37308495 JRNL DOI 10.1038/S41467-023-38908-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.991 REMARK 3 FREE R VALUE TEST SET COUNT : 2652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 274 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49500 REMARK 3 B22 (A**2) : -0.49500 REMARK 3 B33 (A**2) : 1.60600 REMARK 3 B12 (A**2) : -0.24800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6057 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5603 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8183 ; 2.023 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13016 ; 0.677 ; 1.550 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 737 ; 7.280 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ;12.256 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 985 ;16.121 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6737 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1197 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1246 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 94 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2888 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 259 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2935 ; 4.498 ; 3.444 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2934 ; 4.495 ; 3.444 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3675 ; 5.995 ; 5.147 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3676 ; 5.995 ; 5.147 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3122 ; 6.298 ; 3.991 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3123 ; 6.297 ; 3.991 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4508 ; 8.856 ; 5.790 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4509 ; 8.855 ; 5.791 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7WAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9784 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.101 REMARK 200 RESOLUTION RANGE LOW (A) : 19.712 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.21800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.72400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7VB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 0.2 M REMARK 280 SODIUM ACETATE , 0.2 M AMMONIUM CHLORIDE, 2.5% (W/V) REMARK 280 POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.63333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.26667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.26667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 TYR B 4 REMARK 465 ASP B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 ASN B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 ASP A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 ASN A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 17 O HOH A 501 1.96 REMARK 500 OE2 GLU A 45 O HOH A 502 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 374 CD GLU B 374 OE1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 16 CB - CA - C ANGL. DEV. = 10.2 DEGREES REMARK 500 MET B 142 CG - SD - CE ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 343 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 343 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 104 61.43 -60.03 REMARK 500 ASP B 108 19.18 -149.30 REMARK 500 ASN B 131 66.77 -175.99 REMARK 500 ILE B 280 -61.78 -96.14 REMARK 500 ILE B 366 -71.31 -104.23 REMARK 500 PHE B 367 142.09 177.93 REMARK 500 ASN B 369 -2.41 77.60 REMARK 500 ASP A 108 58.16 -157.18 REMARK 500 THR A 113 -89.70 -51.67 REMARK 500 VAL A 133 79.56 -105.10 REMARK 500 ASP A 135 81.03 48.25 REMARK 500 ILE A 366 -74.64 -108.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 114 CYS A 115 -149.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 17 0.13 SIDE CHAIN REMARK 500 ARG B 130 0.14 SIDE CHAIN REMARK 500 ARG A 75 0.09 SIDE CHAIN REMARK 500 ARG A 130 0.07 SIDE CHAIN REMARK 500 ARG A 209 0.11 SIDE CHAIN REMARK 500 ARG A 232 0.08 SIDE CHAIN REMARK 500 ARG A 239 0.08 SIDE CHAIN REMARK 500 ARG A 303 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 317 -10.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7VB8 RELATED DB: PDB REMARK 900 RELATED ID: 7WAQ RELATED DB: PDB REMARK 900 RELATED ID: 7WAS RELATED DB: PDB DBREF1 7WAR B 2 377 UNP A0A1B6PFV1_SORBI DBREF2 7WAR B A0A1B6PFV1 2 377 DBREF1 7WAR A 2 377 UNP A0A1B6PFV1_SORBI DBREF2 7WAR A A0A1B6PFV1 2 377 SEQRES 1 B 376 GLY SER TYR ASP SER SER SER SER SER SER ASN ASP SER SEQRES 2 B 376 SER ALA ARG ASN GLU GLU ASP GLU SER CYS MET PHE ALA SEQRES 3 B 376 LEU LYS LEU LEU GLY GLY PHE ALA VAL PRO PHE THR ILE SEQRES 4 B 376 LYS ALA VAL ILE GLU LEU GLY VAL MET ASP GLN LEU LEU SEQRES 5 B 376 THR ALA GLU ARG ALA MET SER ALA GLU GLU LEU VAL ALA SEQRES 6 B 376 ALA ALA VAL ALA ALA GLN LEU PRO ARG PRO GLU VAL ALA SEQRES 7 B 376 CYS THR MET VAL ASP ARG LEU LEU ARG PHE LEU ALA SER SEQRES 8 B 376 HIS SER VAL VAL ARG CYS THR THR GLU VAL VAL VAL GLY SEQRES 9 B 376 THR ASP ASP ALA THR THR THR THR CYS CYS ARG ARG SER SEQRES 10 B 376 TYR ALA ALA SER PRO VAL CYS LYS TRP PHE ALA ARG ASN SEQRES 11 B 376 GLY VAL GLU ASP SER VAL LEU PRO LEU GLY MET MET ILE SEQRES 12 B 376 LEU ASN LYS THR PHE LEU ASP SER TRP GLN ASN ILE THR SEQRES 13 B 376 ASP ALA VAL LEU GLU GLY ALA ALA PRO PHE GLU LYS THR SEQRES 14 B 376 TYR GLY MET PRO MET PHE GLU TYR LEU SER THR ASN GLY SEQRES 15 B 376 PRO LEU ASN THR VAL PHE HIS GLU ALA MET ALA ASN HIS SEQRES 16 B 376 SER MET ILE ILE THR LYS LYS LEU LEU LYS PHE PHE ARG SEQRES 17 B 376 GLY PHE GLU GLY LEU ASP VAL LEU VAL ASP VAL GLY GLY SEQRES 18 B 376 GLY ASN GLY THR THR LEU GLN MET ILE ARG GLY GLN TYR SEQRES 19 B 376 LYS ASN MET ARG GLY ILE ASN TYR ASP LEU PRO HIS VAL SEQRES 20 B 376 ILE ALA GLN ALA ALA PRO VAL GLU GLY VAL GLU HIS VAL SEQRES 21 B 376 GLY GLY SER MET PHE ASP ASN ILE PRO ARG GLY ASN ALA SEQRES 22 B 376 VAL LEU LEU LYS TRP ILE LEU HIS ASP TRP ASP ASP LYS SEQRES 23 B 376 ALA CYS ILE LYS ILE LEU LYS ASN CYS TYR THR ALA LEU SEQRES 24 B 376 HIS VAL ARG GLY LYS VAL ILE VAL LEU GLU TYR VAL VAL SEQRES 25 B 376 PRO ASP GLU PRO GLU PRO THR LEU ALA ALA GLN GLY ALA SEQRES 26 B 376 PHE GLU LEU ASP LEU THR MET LEU VAL THR PHE GLY SER SEQRES 27 B 376 GLY LYS GLU ARG THR GLN ARG GLU PHE SER GLU LEU ALA SEQRES 28 B 376 MET GLU ALA GLY PHE SER ARG GLU PHE LYS ALA THR TYR SEQRES 29 B 376 ILE PHE ALA ASN VAL TRP ALA LEU GLU PHE THR LYS SEQRES 1 A 376 GLY SER TYR ASP SER SER SER SER SER SER ASN ASP SER SEQRES 2 A 376 SER ALA ARG ASN GLU GLU ASP GLU SER CYS MET PHE ALA SEQRES 3 A 376 LEU LYS LEU LEU GLY GLY PHE ALA VAL PRO PHE THR ILE SEQRES 4 A 376 LYS ALA VAL ILE GLU LEU GLY VAL MET ASP GLN LEU LEU SEQRES 5 A 376 THR ALA GLU ARG ALA MET SER ALA GLU GLU LEU VAL ALA SEQRES 6 A 376 ALA ALA VAL ALA ALA GLN LEU PRO ARG PRO GLU VAL ALA SEQRES 7 A 376 CYS THR MET VAL ASP ARG LEU LEU ARG PHE LEU ALA SER SEQRES 8 A 376 HIS SER VAL VAL ARG CYS THR THR GLU VAL VAL VAL GLY SEQRES 9 A 376 THR ASP ASP ALA THR THR THR THR CYS CYS ARG ARG SER SEQRES 10 A 376 TYR ALA ALA SER PRO VAL CYS LYS TRP PHE ALA ARG ASN SEQRES 11 A 376 GLY VAL GLU ASP SER VAL LEU PRO LEU GLY MET MET ILE SEQRES 12 A 376 LEU ASN LYS THR PHE LEU ASP SER TRP GLN ASN ILE THR SEQRES 13 A 376 ASP ALA VAL LEU GLU GLY ALA ALA PRO PHE GLU LYS THR SEQRES 14 A 376 TYR GLY MET PRO MET PHE GLU TYR LEU SER THR ASN GLY SEQRES 15 A 376 PRO LEU ASN THR VAL PHE HIS GLU ALA MET ALA ASN HIS SEQRES 16 A 376 SER MET ILE ILE THR LYS LYS LEU LEU LYS PHE PHE ARG SEQRES 17 A 376 GLY PHE GLU GLY LEU ASP VAL LEU VAL ASP VAL GLY GLY SEQRES 18 A 376 GLY ASN GLY THR THR LEU GLN MET ILE ARG GLY GLN TYR SEQRES 19 A 376 LYS ASN MET ARG GLY ILE ASN TYR ASP LEU PRO HIS VAL SEQRES 20 A 376 ILE ALA GLN ALA ALA PRO VAL GLU GLY VAL GLU HIS VAL SEQRES 21 A 376 GLY GLY SER MET PHE ASP ASN ILE PRO ARG GLY ASN ALA SEQRES 22 A 376 VAL LEU LEU LYS TRP ILE LEU HIS ASP TRP ASP ASP LYS SEQRES 23 A 376 ALA CYS ILE LYS ILE LEU LYS ASN CYS TYR THR ALA LEU SEQRES 24 A 376 HIS VAL ARG GLY LYS VAL ILE VAL LEU GLU TYR VAL VAL SEQRES 25 A 376 PRO ASP GLU PRO GLU PRO THR LEU ALA ALA GLN GLY ALA SEQRES 26 A 376 PHE GLU LEU ASP LEU THR MET LEU VAL THR PHE GLY SER SEQRES 27 A 376 GLY LYS GLU ARG THR GLN ARG GLU PHE SER GLU LEU ALA SEQRES 28 A 376 MET GLU ALA GLY PHE SER ARG GLU PHE LYS ALA THR TYR SEQRES 29 A 376 ILE PHE ALA ASN VAL TRP ALA LEU GLU PHE THR LYS HET 8KZ B 401 18 HET NAD B 402 44 HET GOL B 403 6 HET EDO B 404 4 HET GOL B 405 6 HET EDO B 406 4 HET GOL B 407 6 HET EDO B 408 4 HET ACT B 409 4 HET GOL B 410 6 HET GOL B 411 6 HET GOL B 412 6 HET PEG B 413 7 HET GOL B 414 6 HET GOL B 415 6 HET EDO B 416 4 HET EDO B 417 4 HET GOL A 401 6 HET 1PE A 402 16 HET 8KZ A 403 18 HET NAD A 404 44 HET EDO A 405 4 HET GOL A 406 6 HET PEG A 407 7 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET EDO A 411 4 HET ACT A 412 4 HET GOL A 413 6 HETNAM 8KZ 3-[(E)-2-(4-HYDROXYPHENYL)ETHENYL]-5-METHOXY-PHENOL HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 8KZ PINOSTILBENE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 8KZ 2(C15 H14 O3) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 GOL 14(C3 H8 O3) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 11 ACT 2(C2 H3 O2 1-) FORMUL 15 PEG 2(C4 H10 O3) FORMUL 21 1PE C10 H22 O6 FORMUL 33 HOH *268(H2 O) HELIX 1 AA1 ASN B 18 GLY B 32 1 15 HELIX 2 AA2 PHE B 34 LEU B 46 1 13 HELIX 3 AA3 GLY B 47 ALA B 55 1 9 HELIX 4 AA4 ALA B 61 VAL B 69 1 9 HELIX 5 AA5 ARG B 75 HIS B 93 1 19 HELIX 6 AA6 PRO B 123 ALA B 129 5 7 HELIX 7 AA7 VAL B 137 LEU B 145 1 9 HELIX 8 AA8 ASN B 146 SER B 152 1 7 HELIX 9 AA9 ASN B 155 GLU B 162 1 8 HELIX 10 AB1 ALA B 165 GLY B 172 1 8 HELIX 11 AB2 PRO B 174 THR B 181 1 8 HELIX 12 AB3 ASN B 182 PHE B 208 1 27 HELIX 13 AB4 GLY B 225 TYR B 235 1 11 HELIX 14 AB5 LEU B 245 GLN B 251 1 7 HELIX 15 AB6 ILE B 280 TRP B 284 5 5 HELIX 16 AB7 ASP B 285 ALA B 299 1 15 HELIX 17 AB8 THR B 320 GLY B 338 1 19 HELIX 18 AB9 THR B 344 ALA B 355 1 12 HELIX 19 AC1 ASN A 18 GLY A 32 1 15 HELIX 20 AC2 PHE A 34 LEU A 46 1 13 HELIX 21 AC3 GLY A 47 ALA A 55 1 9 HELIX 22 AC4 ALA A 61 VAL A 69 1 9 HELIX 23 AC5 ARG A 75 HIS A 93 1 19 HELIX 24 AC6 PRO A 123 ALA A 129 5 7 HELIX 25 AC7 VAL A 137 LEU A 145 1 9 HELIX 26 AC8 ASN A 146 SER A 152 1 7 HELIX 27 AC9 ASN A 155 GLY A 163 1 9 HELIX 28 AD1 ALA A 165 GLY A 172 1 8 HELIX 29 AD2 PRO A 174 LEU A 179 1 6 HELIX 30 AD3 ASN A 182 PHE A 208 1 27 HELIX 31 AD4 GLY A 225 TYR A 235 1 11 HELIX 32 AD5 LEU A 245 GLN A 251 1 7 HELIX 33 AD6 ILE A 280 TRP A 284 5 5 HELIX 34 AD7 ASP A 285 ALA A 299 1 15 HELIX 35 AD8 THR A 320 GLY A 338 1 19 HELIX 36 AD9 THR A 344 ALA A 355 1 12 SHEET 1 AA1 3 MET B 59 SER B 60 0 SHEET 2 AA1 3 CYS B 115 ALA B 121 -1 O TYR B 119 N MET B 59 SHEET 3 AA1 3 VAL B 96 VAL B 102 -1 N ARG B 97 O ALA B 120 SHEET 1 AA2 7 VAL B 258 GLY B 262 0 SHEET 2 AA2 7 ARG B 239 ASP B 244 1 N ASN B 242 O VAL B 261 SHEET 3 AA2 7 VAL B 216 VAL B 220 1 N LEU B 217 O ILE B 241 SHEET 4 AA2 7 GLY B 272 LYS B 278 1 O LEU B 276 N VAL B 218 SHEET 5 AA2 7 LEU B 300 GLU B 310 1 O ILE B 307 N VAL B 275 SHEET 6 AA2 7 VAL B 370 THR B 376 -1 O LEU B 373 N VAL B 308 SHEET 7 AA2 7 PHE B 361 PHE B 367 -1 N THR B 364 O ALA B 372 SHEET 1 AA3 3 MET A 59 SER A 60 0 SHEET 2 AA3 3 CYS A 115 ALA A 121 -1 O TYR A 119 N MET A 59 SHEET 3 AA3 3 VAL A 96 VAL A 102 -1 N ARG A 97 O ALA A 120 SHEET 1 AA4 7 VAL A 258 GLY A 262 0 SHEET 2 AA4 7 ARG A 239 ASP A 244 1 N GLY A 240 O GLU A 259 SHEET 3 AA4 7 VAL A 216 VAL A 220 1 N ASP A 219 O ILE A 241 SHEET 4 AA4 7 GLY A 272 LYS A 278 1 O LEU A 276 N VAL A 218 SHEET 5 AA4 7 LEU A 300 GLU A 310 1 O ILE A 307 N VAL A 275 SHEET 6 AA4 7 VAL A 370 THR A 376 -1 O LEU A 373 N VAL A 308 SHEET 7 AA4 7 PHE A 361 PHE A 367 -1 N THR A 364 O ALA A 372 SSBOND 1 CYS B 114 CYS B 115 1555 1555 2.10 SSBOND 2 CYS A 114 CYS A 115 1555 1555 2.10 CRYST1 96.700 96.700 166.900 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010341 0.005971 0.000000 0.00000 SCALE2 0.000000 0.011941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005992 0.00000