data_7WB5 # _entry.id 7WB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WB5 pdb_00007wb5 10.2210/pdb7wb5/pdb WWPDB D_1300026371 ? ? EMDB EMD-32395 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'local structure of R33 and spike' _pdbx_database_related.db_id EMD-32395 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WB5 _pdbx_database_status.recvd_initial_deposition_date 2021-12-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Pulan, L.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Signal Transduct Target Ther' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2059-3635 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 23 _citation.page_last 23 _citation.title 'A non-ACE2-blocking neutralizing antibody against Omicron-included SARS-CoV-2 variants.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41392-022-00879-2 _citation.pdbx_database_id_PubMed 35078968 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Duan, X.' 1 ? primary 'Shi, R.' 2 ? primary 'Liu, P.' 3 ? primary 'Huang, Q.' 4 ? primary 'Wang, F.' 5 ? primary 'Chen, X.' 6 ? primary 'Feng, H.' 7 ? primary 'Huang, W.' 8 0000-0002-4246-8889 primary 'Xiao, J.' 9 0000-0003-1822-1701 primary 'Yan, J.' 10 0000-0003-0502-3829 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hu33 heavy chain' 13162.599 1 ? ? ? ? 2 polymer man 'hu33 light chain' 11717.014 1 ? ? ? ? 3 polymer man 'Surface glycoprotein' 20745.172 1 ? ? ? ? 4 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVQSGSELKKPGASVKVSCKASGYTFTDYGMNWVRQAPGQGLEWMGWINTYSGEPTYADDFRGRFVFSLDTSVSTAY LQICSLKAEDTAVYYCARGGNWDWYFDVWGQGTLVTVS ; ;QVQLVQSGSELKKPGASVKVSCKASGYTFTDYGMNWVRQAPGQGLEWMGWINTYSGEPTYADDFRGRFVFSLDTSVSTAY LQICSLKAEDTAVYYCARGGNWDWYFDVWGQGTLVTVS ; H ? 2 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDRVTITCRASQSVSNFLHWYQQKPGKAPKLLIYYASQSISGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSNTWPLTFGQGTKLEIK ; ;DIQMTQSPSSLSASVGDRVTITCRASQSVSNFLHWYQQKPGKAPKLLIYYASQSISGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSNTWPLTFGQGTKLEIK ; L ? 3 'polypeptide(L)' no no ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQ SYGFQPTYGVGYQPYRVVVLSFE ; ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQ SYGFQPTYGVGYQPYRVVVLSFE ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLN n 1 7 SER n 1 8 GLY n 1 9 SER n 1 10 GLU n 1 11 LEU n 1 12 LYS n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 ALA n 1 17 SER n 1 18 VAL n 1 19 LYS n 1 20 VAL n 1 21 SER n 1 22 CYS n 1 23 LYS n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 TYR n 1 28 THR n 1 29 PHE n 1 30 THR n 1 31 ASP n 1 32 TYR n 1 33 GLY n 1 34 MET n 1 35 ASN n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 GLN n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 MET n 1 49 GLY n 1 50 TRP n 1 51 ILE n 1 52 ASN n 1 53 THR n 1 54 TYR n 1 55 SER n 1 56 GLY n 1 57 GLU n 1 58 PRO n 1 59 THR n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 ASP n 1 64 PHE n 1 65 ARG n 1 66 GLY n 1 67 ARG n 1 68 PHE n 1 69 VAL n 1 70 PHE n 1 71 SER n 1 72 LEU n 1 73 ASP n 1 74 THR n 1 75 SER n 1 76 VAL n 1 77 SER n 1 78 THR n 1 79 ALA n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 ILE n 1 84 CYS n 1 85 SER n 1 86 LEU n 1 87 LYS n 1 88 ALA n 1 89 GLU n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 ALA n 1 98 ARG n 1 99 GLY n 1 100 GLY n 1 101 ASN n 1 102 TRP n 1 103 ASP n 1 104 TRP n 1 105 TYR n 1 106 PHE n 1 107 ASP n 1 108 VAL n 1 109 TRP n 1 110 GLY n 1 111 GLN n 1 112 GLY n 1 113 THR n 1 114 LEU n 1 115 VAL n 1 116 THR n 1 117 VAL n 1 118 SER n 2 1 ASP n 2 2 ILE n 2 3 GLN n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 SER n 2 11 LEU n 2 12 SER n 2 13 ALA n 2 14 SER n 2 15 VAL n 2 16 GLY n 2 17 ASP n 2 18 ARG n 2 19 VAL n 2 20 THR n 2 21 ILE n 2 22 THR n 2 23 CYS n 2 24 ARG n 2 25 ALA n 2 26 SER n 2 27 GLN n 2 28 SER n 2 29 VAL n 2 30 SER n 2 31 ASN n 2 32 PHE n 2 33 LEU n 2 34 HIS n 2 35 TRP n 2 36 TYR n 2 37 GLN n 2 38 GLN n 2 39 LYS n 2 40 PRO n 2 41 GLY n 2 42 LYS n 2 43 ALA n 2 44 PRO n 2 45 LYS n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 TYR n 2 50 TYR n 2 51 ALA n 2 52 SER n 2 53 GLN n 2 54 SER n 2 55 ILE n 2 56 SER n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 SER n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 GLY n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 THR n 2 70 ASP n 2 71 PHE n 2 72 THR n 2 73 LEU n 2 74 THR n 2 75 ILE n 2 76 SER n 2 77 SER n 2 78 LEU n 2 79 GLN n 2 80 PRO n 2 81 GLU n 2 82 ASP n 2 83 PHE n 2 84 ALA n 2 85 THR n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 GLN n 2 90 GLN n 2 91 SER n 2 92 ASN n 2 93 THR n 2 94 TRP n 2 95 PRO n 2 96 LEU n 2 97 THR n 2 98 PHE n 2 99 GLY n 2 100 GLN n 2 101 GLY n 2 102 THR n 2 103 LYS n 2 104 LEU n 2 105 GLU n 2 106 ILE n 2 107 LYS n 3 1 ASN n 3 2 LEU n 3 3 CYS n 3 4 PRO n 3 5 PHE n 3 6 GLY n 3 7 GLU n 3 8 VAL n 3 9 PHE n 3 10 ASN n 3 11 ALA n 3 12 THR n 3 13 ARG n 3 14 PHE n 3 15 ALA n 3 16 SER n 3 17 VAL n 3 18 TYR n 3 19 ALA n 3 20 TRP n 3 21 ASN n 3 22 ARG n 3 23 LYS n 3 24 ARG n 3 25 ILE n 3 26 SER n 3 27 ASN n 3 28 CYS n 3 29 VAL n 3 30 ALA n 3 31 ASP n 3 32 TYR n 3 33 SER n 3 34 VAL n 3 35 LEU n 3 36 TYR n 3 37 ASN n 3 38 SER n 3 39 ALA n 3 40 SER n 3 41 PHE n 3 42 SER n 3 43 THR n 3 44 PHE n 3 45 LYS n 3 46 CYS n 3 47 TYR n 3 48 GLY n 3 49 VAL n 3 50 SER n 3 51 PRO n 3 52 THR n 3 53 LYS n 3 54 LEU n 3 55 ASN n 3 56 ASP n 3 57 LEU n 3 58 CYS n 3 59 PHE n 3 60 THR n 3 61 ASN n 3 62 VAL n 3 63 TYR n 3 64 ALA n 3 65 ASP n 3 66 SER n 3 67 PHE n 3 68 VAL n 3 69 ILE n 3 70 ARG n 3 71 GLY n 3 72 ASP n 3 73 GLU n 3 74 VAL n 3 75 ARG n 3 76 GLN n 3 77 ILE n 3 78 ALA n 3 79 PRO n 3 80 GLY n 3 81 GLN n 3 82 THR n 3 83 GLY n 3 84 ASN n 3 85 ILE n 3 86 ALA n 3 87 ASP n 3 88 TYR n 3 89 ASN n 3 90 TYR n 3 91 LYS n 3 92 LEU n 3 93 PRO n 3 94 ASP n 3 95 ASP n 3 96 PHE n 3 97 THR n 3 98 GLY n 3 99 CYS n 3 100 VAL n 3 101 ILE n 3 102 ALA n 3 103 TRP n 3 104 ASN n 3 105 SER n 3 106 ASN n 3 107 ASN n 3 108 LEU n 3 109 ASP n 3 110 SER n 3 111 LYS n 3 112 VAL n 3 113 GLY n 3 114 GLY n 3 115 ASN n 3 116 TYR n 3 117 ASN n 3 118 TYR n 3 119 LEU n 3 120 TYR n 3 121 ARG n 3 122 LEU n 3 123 PHE n 3 124 ARG n 3 125 LYS n 3 126 SER n 3 127 ASN n 3 128 LEU n 3 129 LYS n 3 130 PRO n 3 131 PHE n 3 132 GLU n 3 133 ARG n 3 134 ASP n 3 135 ILE n 3 136 SER n 3 137 THR n 3 138 GLU n 3 139 ILE n 3 140 TYR n 3 141 GLN n 3 142 ALA n 3 143 GLY n 3 144 SER n 3 145 THR n 3 146 PRO n 3 147 CYS n 3 148 ASN n 3 149 GLY n 3 150 VAL n 3 151 LYS n 3 152 GLY n 3 153 PHE n 3 154 ASN n 3 155 CYS n 3 156 TYR n 3 157 PHE n 3 158 PRO n 3 159 LEU n 3 160 GLN n 3 161 SER n 3 162 TYR n 3 163 GLY n 3 164 PHE n 3 165 GLN n 3 166 PRO n 3 167 THR n 3 168 TYR n 3 169 GLY n 3 170 VAL n 3 171 GLY n 3 172 TYR n 3 173 GLN n 3 174 PRO n 3 175 TYR n 3 176 ARG n 3 177 VAL n 3 178 VAL n 3 179 VAL n 3 180 LEU n 3 181 SER n 3 182 PHE n 3 183 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 118 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 183 ? ? ? ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7WB5 7WB5 ? 1 ? 1 2 PDB 7WB5 7WB5 ? 2 ? 1 3 UNP A0A7U3CI26_SARS2 A0A7U3CI26 ? 3 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQ SYGFQPTYGVGYQPYRVVVLSFE ; 11 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WB5 H 1 ? 118 ? 7WB5 1 ? 118 ? 1 118 2 2 7WB5 L 1 ? 107 ? 7WB5 1 ? 107 ? 1 107 3 3 7WB5 R 1 ? 183 ? A0A7U3CI26 11 ? 193 ? 334 516 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WB5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7WB5 _struct.title 'local structure of hu33 and spike' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WB5 _struct_keywords.text 'complex, spike, antibody, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER C 16 ? TRP C 20 ? SER R 349 TRP R 353 5 ? 5 HELX_P HELX_P2 AA2 ASP C 31 ? ASN C 37 ? ASP R 364 ASN R 370 1 ? 7 HELX_P HELX_P3 AA3 GLY C 83 ? TYR C 88 ? GLY R 416 TYR R 421 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 28 SG ? ? R CYS 336 R CYS 361 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 99 SG ? ? R CYS 379 R CYS 432 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf5 disulf ? ? C CYS 147 SG ? ? ? 1_555 C CYS 155 SG ? ? R CYS 480 R CYS 488 1_555 ? ? ? ? ? ? ? 2.024 ? ? covale1 covale one ? C ASN 10 ND2 ? ? ? 1_555 D NAG . C1 ? ? R ASN 343 A NAG 1 1_555 ? ? ? ? ? ? ? 1.414 ? N-Glycosylation covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale3 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.431 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 B . ? SER 7 L PRO 8 B ? PRO 8 L 1 -1.77 2 TRP 94 B . ? TRP 94 L PRO 95 B ? PRO 95 L 1 -7.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 2 ? AA8 ? 4 ? AA9 ? 5 ? AB1 ? 4 ? AB2 ? 2 ? AB3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 5 ? GLN A 6 ? VAL H 5 GLN H 6 AA1 2 CYS A 22 ? LYS A 23 ? CYS H 22 LYS H 23 AA2 1 LEU A 11 ? LYS A 12 ? LEU H 11 LYS H 12 AA2 2 THR A 116 ? VAL A 117 ? THR H 116 VAL H 117 AA3 1 GLU A 46 ? TRP A 47 ? GLU H 46 TRP H 47 AA3 2 ASN A 35 ? GLN A 39 ? ASN H 35 GLN H 39 AA3 3 VAL A 93 ? ALA A 97 ? VAL H 93 ALA H 97 AA3 4 THR A 113 ? LEU A 114 ? THR H 113 LEU H 114 AA4 1 GLY A 49 ? ILE A 51 ? GLY H 49 ILE H 51 AA4 2 PRO A 58 ? TYR A 60 ? PRO H 58 TYR H 60 AA5 1 PHE A 68 ? PHE A 70 ? PHE H 68 PHE H 70 AA5 2 LEU A 81 ? ILE A 83 ? LEU H 81 ILE H 83 AA6 1 MET B 4 ? SER B 7 ? MET L 4 SER L 7 AA6 2 VAL B 19 ? ALA B 25 ? VAL L 19 ALA L 25 AA6 3 ASP B 70 ? ILE B 75 ? ASP L 70 ILE L 75 AA6 4 PHE B 62 ? SER B 67 ? PHE L 62 SER L 67 AA7 1 SER B 10 ? ALA B 13 ? SER L 10 ALA L 13 AA7 2 LYS B 103 ? ILE B 106 ? LYS L 103 ILE L 106 AA8 1 GLN B 53 ? SER B 54 ? GLN L 53 SER L 54 AA8 2 LYS B 45 ? TYR B 49 ? LYS L 45 TYR L 49 AA8 3 LEU B 33 ? GLN B 37 ? LEU L 33 GLN L 37 AA8 4 TYR B 87 ? GLN B 90 ? TYR L 87 GLN L 90 AA9 1 ASN C 21 ? ILE C 25 ? ASN R 354 ILE R 358 AA9 2 VAL C 62 ? SER C 66 ? VAL R 395 SER R 399 AA9 3 PRO C 174 ? SER C 181 ? PRO R 507 SER R 514 AA9 4 GLY C 98 ? TRP C 103 ? GLY R 431 TRP R 436 AA9 5 CYS C 46 ? TYR C 47 ? CYS R 379 TYR R 380 AB1 1 ASN C 21 ? ILE C 25 ? ASN R 354 ILE R 358 AB1 2 VAL C 62 ? SER C 66 ? VAL R 395 SER R 399 AB1 3 PRO C 174 ? SER C 181 ? PRO R 507 SER R 514 AB1 4 ILE C 69 ? ARG C 70 ? ILE R 402 ARG R 403 AB2 1 LEU C 119 ? ARG C 121 ? LEU R 452 ARG R 454 AB2 2 LEU C 159 ? SER C 161 ? LEU R 492 SER R 494 AB3 1 TYR C 140 ? GLN C 141 ? TYR R 473 GLN R 474 AB3 2 CYS C 155 ? TYR C 156 ? CYS R 488 TYR R 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL H 5 O LYS A 23 ? O LYS H 23 AA2 1 2 N LYS A 12 ? N LYS H 12 O THR A 116 ? O THR H 116 AA3 1 2 O GLU A 46 ? O GLU H 46 N ARG A 38 ? N ARG H 38 AA3 2 3 N VAL A 37 ? N VAL H 37 O TYR A 95 ? O TYR H 95 AA3 3 4 N TYR A 94 ? N TYR H 94 O THR A 113 ? O THR H 113 AA4 1 2 N TRP A 50 ? N TRP H 50 O THR A 59 ? O THR H 59 AA5 1 2 N VAL A 69 ? N VAL H 69 O GLN A 82 ? O GLN H 82 AA6 1 2 N THR B 5 ? N THR L 5 O ARG B 24 ? O ARG L 24 AA6 2 3 N CYS B 23 ? N CYS L 23 O PHE B 71 ? O PHE L 71 AA6 3 4 O ASP B 70 ? O ASP L 70 N SER B 67 ? N SER L 67 AA7 1 2 N ALA B 13 ? N ALA L 13 O GLU B 105 ? O GLU L 105 AA8 1 2 O GLN B 53 ? O GLN L 53 N TYR B 49 ? N TYR L 49 AA8 2 3 O ILE B 48 ? O ILE L 48 N TRP B 35 ? N TRP L 35 AA8 3 4 N TYR B 36 ? N TYR L 36 O TYR B 87 ? O TYR L 87 AA9 1 2 N ILE C 25 ? N ILE R 358 O VAL C 62 ? O VAL R 395 AA9 2 3 N TYR C 63 ? N TYR R 396 O SER C 181 ? O SER R 514 AA9 3 4 O VAL C 178 ? O VAL R 511 N ILE C 101 ? N ILE R 434 AA9 4 5 O GLY C 98 ? O GLY R 431 N TYR C 47 ? N TYR R 380 AB1 1 2 N ILE C 25 ? N ILE R 358 O VAL C 62 ? O VAL R 395 AB1 2 3 N TYR C 63 ? N TYR R 396 O SER C 181 ? O SER R 514 AB1 3 4 O TYR C 175 ? O TYR R 508 N ILE C 69 ? N ILE R 402 AB2 1 2 N TYR C 120 ? N TYR R 453 O GLN C 160 ? O GLN R 493 AB3 1 2 N TYR C 140 ? N TYR R 473 O TYR C 156 ? O TYR R 489 # _atom_sites.entry_id 7WB5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN H . n A 1 2 VAL 2 2 2 VAL VAL H . n A 1 3 GLN 3 3 3 GLN GLN H . n A 1 4 LEU 4 4 4 LEU LEU H . n A 1 5 VAL 5 5 5 VAL VAL H . n A 1 6 GLN 6 6 6 GLN GLN H . n A 1 7 SER 7 7 7 SER SER H . n A 1 8 GLY 8 8 8 GLY GLY H . n A 1 9 SER 9 9 9 SER SER H . n A 1 10 GLU 10 10 10 GLU GLU H . n A 1 11 LEU 11 11 11 LEU LEU H . n A 1 12 LYS 12 12 12 LYS LYS H . n A 1 13 LYS 13 13 13 LYS LYS H . n A 1 14 PRO 14 14 14 PRO PRO H . n A 1 15 GLY 15 15 15 GLY GLY H . n A 1 16 ALA 16 16 16 ALA ALA H . n A 1 17 SER 17 17 17 SER SER H . n A 1 18 VAL 18 18 18 VAL VAL H . n A 1 19 LYS 19 19 19 LYS LYS H . n A 1 20 VAL 20 20 20 VAL VAL H . n A 1 21 SER 21 21 21 SER SER H . n A 1 22 CYS 22 22 22 CYS CYS H . n A 1 23 LYS 23 23 23 LYS LYS H . n A 1 24 ALA 24 24 24 ALA ALA H . n A 1 25 SER 25 25 25 SER SER H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 TYR 27 27 27 TYR TYR H . n A 1 28 THR 28 28 28 THR THR H . n A 1 29 PHE 29 29 29 PHE PHE H . n A 1 30 THR 30 30 30 THR THR H . n A 1 31 ASP 31 31 31 ASP ASP H . n A 1 32 TYR 32 32 32 TYR TYR H . n A 1 33 GLY 33 33 33 GLY GLY H . n A 1 34 MET 34 34 34 MET MET H . n A 1 35 ASN 35 35 35 ASN ASN H . n A 1 36 TRP 36 36 36 TRP TRP H . n A 1 37 VAL 37 37 37 VAL VAL H . n A 1 38 ARG 38 38 38 ARG ARG H . n A 1 39 GLN 39 39 39 GLN GLN H . n A 1 40 ALA 40 40 40 ALA ALA H . n A 1 41 PRO 41 41 41 PRO PRO H . n A 1 42 GLY 42 42 42 GLY GLY H . n A 1 43 GLN 43 43 43 GLN GLN H . n A 1 44 GLY 44 44 44 GLY GLY H . n A 1 45 LEU 45 45 45 LEU LEU H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 TRP 47 47 47 TRP TRP H . n A 1 48 MET 48 48 48 MET MET H . n A 1 49 GLY 49 49 49 GLY GLY H . n A 1 50 TRP 50 50 50 TRP TRP H . n A 1 51 ILE 51 51 51 ILE ILE H . n A 1 52 ASN 52 52 52 ASN ASN H . n A 1 53 THR 53 53 53 THR THR H . n A 1 54 TYR 54 54 54 TYR TYR H . n A 1 55 SER 55 55 55 SER SER H . n A 1 56 GLY 56 56 56 GLY GLY H . n A 1 57 GLU 57 57 57 GLU GLU H . n A 1 58 PRO 58 58 58 PRO PRO H . n A 1 59 THR 59 59 59 THR THR H . n A 1 60 TYR 60 60 60 TYR TYR H . n A 1 61 ALA 61 61 61 ALA ALA H . n A 1 62 ASP 62 62 62 ASP ASP H . n A 1 63 ASP 63 63 63 ASP ASP H . n A 1 64 PHE 64 64 64 PHE PHE H . n A 1 65 ARG 65 65 65 ARG ARG H . n A 1 66 GLY 66 66 66 GLY GLY H . n A 1 67 ARG 67 67 67 ARG ARG H . n A 1 68 PHE 68 68 68 PHE PHE H . n A 1 69 VAL 69 69 69 VAL VAL H . n A 1 70 PHE 70 70 70 PHE PHE H . n A 1 71 SER 71 71 71 SER SER H . n A 1 72 LEU 72 72 72 LEU LEU H . n A 1 73 ASP 73 73 73 ASP ASP H . n A 1 74 THR 74 74 74 THR THR H . n A 1 75 SER 75 75 75 SER SER H . n A 1 76 VAL 76 76 76 VAL VAL H . n A 1 77 SER 77 77 77 SER SER H . n A 1 78 THR 78 78 78 THR THR H . n A 1 79 ALA 79 79 79 ALA ALA H . n A 1 80 TYR 80 80 80 TYR TYR H . n A 1 81 LEU 81 81 81 LEU LEU H . n A 1 82 GLN 82 82 82 GLN GLN H . n A 1 83 ILE 83 83 83 ILE ILE H . n A 1 84 CYS 84 84 84 CYS CYS H . n A 1 85 SER 85 85 85 SER SER H . n A 1 86 LEU 86 86 86 LEU LEU H . n A 1 87 LYS 87 87 87 LYS LYS H . n A 1 88 ALA 88 88 88 ALA ALA H . n A 1 89 GLU 89 89 89 GLU GLU H . n A 1 90 ASP 90 90 90 ASP ASP H . n A 1 91 THR 91 91 91 THR THR H . n A 1 92 ALA 92 92 92 ALA ALA H . n A 1 93 VAL 93 93 93 VAL VAL H . n A 1 94 TYR 94 94 94 TYR TYR H . n A 1 95 TYR 95 95 95 TYR TYR H . n A 1 96 CYS 96 96 96 CYS CYS H . n A 1 97 ALA 97 97 97 ALA ALA H . n A 1 98 ARG 98 98 98 ARG ARG H . n A 1 99 GLY 99 99 99 GLY GLY H . n A 1 100 GLY 100 100 100 GLY GLY H . n A 1 101 ASN 101 101 101 ASN ASN H . n A 1 102 TRP 102 102 102 TRP TRP H . n A 1 103 ASP 103 103 103 ASP ASP H . n A 1 104 TRP 104 104 104 TRP TRP H . n A 1 105 TYR 105 105 105 TYR TYR H . n A 1 106 PHE 106 106 106 PHE PHE H . n A 1 107 ASP 107 107 107 ASP ASP H . n A 1 108 VAL 108 108 108 VAL VAL H . n A 1 109 TRP 109 109 109 TRP TRP H . n A 1 110 GLY 110 110 110 GLY GLY H . n A 1 111 GLN 111 111 111 GLN GLN H . n A 1 112 GLY 112 112 112 GLY GLY H . n A 1 113 THR 113 113 113 THR THR H . n A 1 114 LEU 114 114 114 LEU LEU H . n A 1 115 VAL 115 115 115 VAL VAL H . n A 1 116 THR 116 116 116 THR THR H . n A 1 117 VAL 117 117 117 VAL VAL H . n A 1 118 SER 118 118 118 SER SER H . n B 2 1 ASP 1 1 1 ASP ASP L . n B 2 2 ILE 2 2 2 ILE ILE L . n B 2 3 GLN 3 3 3 GLN GLN L . n B 2 4 MET 4 4 4 MET MET L . n B 2 5 THR 5 5 5 THR THR L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 SER 7 7 7 SER SER L . n B 2 8 PRO 8 8 8 PRO PRO L . n B 2 9 SER 9 9 9 SER SER L . n B 2 10 SER 10 10 10 SER SER L . n B 2 11 LEU 11 11 11 LEU LEU L . n B 2 12 SER 12 12 12 SER SER L . n B 2 13 ALA 13 13 13 ALA ALA L . n B 2 14 SER 14 14 14 SER SER L . n B 2 15 VAL 15 15 15 VAL VAL L . n B 2 16 GLY 16 16 16 GLY GLY L . n B 2 17 ASP 17 17 17 ASP ASP L . n B 2 18 ARG 18 18 18 ARG ARG L . n B 2 19 VAL 19 19 19 VAL VAL L . n B 2 20 THR 20 20 20 THR THR L . n B 2 21 ILE 21 21 21 ILE ILE L . n B 2 22 THR 22 22 22 THR THR L . n B 2 23 CYS 23 23 23 CYS CYS L . n B 2 24 ARG 24 24 24 ARG ARG L . n B 2 25 ALA 25 25 25 ALA ALA L . n B 2 26 SER 26 26 26 SER SER L . n B 2 27 GLN 27 27 27 GLN GLN L . n B 2 28 SER 28 28 28 SER SER L . n B 2 29 VAL 29 29 29 VAL VAL L . n B 2 30 SER 30 30 30 SER SER L . n B 2 31 ASN 31 31 31 ASN ASN L . n B 2 32 PHE 32 32 32 PHE PHE L . n B 2 33 LEU 33 33 33 LEU LEU L . n B 2 34 HIS 34 34 34 HIS HIS L . n B 2 35 TRP 35 35 35 TRP TRP L . n B 2 36 TYR 36 36 36 TYR TYR L . n B 2 37 GLN 37 37 37 GLN GLN L . n B 2 38 GLN 38 38 38 GLN GLN L . n B 2 39 LYS 39 39 39 LYS LYS L . n B 2 40 PRO 40 40 40 PRO PRO L . n B 2 41 GLY 41 41 41 GLY GLY L . n B 2 42 LYS 42 42 42 LYS LYS L . n B 2 43 ALA 43 43 43 ALA ALA L . n B 2 44 PRO 44 44 44 PRO PRO L . n B 2 45 LYS 45 45 45 LYS LYS L . n B 2 46 LEU 46 46 46 LEU LEU L . n B 2 47 LEU 47 47 47 LEU LEU L . n B 2 48 ILE 48 48 48 ILE ILE L . n B 2 49 TYR 49 49 49 TYR TYR L . n B 2 50 TYR 50 50 50 TYR TYR L . n B 2 51 ALA 51 51 51 ALA ALA L . n B 2 52 SER 52 52 52 SER SER L . n B 2 53 GLN 53 53 53 GLN GLN L . n B 2 54 SER 54 54 54 SER SER L . n B 2 55 ILE 55 55 55 ILE ILE L . n B 2 56 SER 56 56 56 SER SER L . n B 2 57 GLY 57 57 57 GLY GLY L . n B 2 58 VAL 58 58 58 VAL VAL L . n B 2 59 PRO 59 59 59 PRO PRO L . n B 2 60 SER 60 60 60 SER SER L . n B 2 61 ARG 61 61 61 ARG ARG L . n B 2 62 PHE 62 62 62 PHE PHE L . n B 2 63 SER 63 63 63 SER SER L . n B 2 64 GLY 64 64 64 GLY GLY L . n B 2 65 SER 65 65 65 SER SER L . n B 2 66 GLY 66 66 66 GLY GLY L . n B 2 67 SER 67 67 67 SER SER L . n B 2 68 GLY 68 68 68 GLY GLY L . n B 2 69 THR 69 69 69 THR THR L . n B 2 70 ASP 70 70 70 ASP ASP L . n B 2 71 PHE 71 71 71 PHE PHE L . n B 2 72 THR 72 72 72 THR THR L . n B 2 73 LEU 73 73 73 LEU LEU L . n B 2 74 THR 74 74 74 THR THR L . n B 2 75 ILE 75 75 75 ILE ILE L . n B 2 76 SER 76 76 76 SER SER L . n B 2 77 SER 77 77 77 SER SER L . n B 2 78 LEU 78 78 78 LEU LEU L . n B 2 79 GLN 79 79 79 GLN GLN L . n B 2 80 PRO 80 80 80 PRO PRO L . n B 2 81 GLU 81 81 81 GLU GLU L . n B 2 82 ASP 82 82 82 ASP ASP L . n B 2 83 PHE 83 83 83 PHE PHE L . n B 2 84 ALA 84 84 84 ALA ALA L . n B 2 85 THR 85 85 85 THR THR L . n B 2 86 TYR 86 86 86 TYR TYR L . n B 2 87 TYR 87 87 87 TYR TYR L . n B 2 88 CYS 88 88 88 CYS CYS L . n B 2 89 GLN 89 89 89 GLN GLN L . n B 2 90 GLN 90 90 90 GLN GLN L . n B 2 91 SER 91 91 91 SER SER L . n B 2 92 ASN 92 92 92 ASN ASN L . n B 2 93 THR 93 93 93 THR THR L . n B 2 94 TRP 94 94 94 TRP TRP L . n B 2 95 PRO 95 95 95 PRO PRO L . n B 2 96 LEU 96 96 96 LEU LEU L . n B 2 97 THR 97 97 97 THR THR L . n B 2 98 PHE 98 98 98 PHE PHE L . n B 2 99 GLY 99 99 99 GLY GLY L . n B 2 100 GLN 100 100 100 GLN GLN L . n B 2 101 GLY 101 101 101 GLY GLY L . n B 2 102 THR 102 102 102 THR THR L . n B 2 103 LYS 103 103 103 LYS LYS L . n B 2 104 LEU 104 104 104 LEU LEU L . n B 2 105 GLU 105 105 105 GLU GLU L . n B 2 106 ILE 106 106 106 ILE ILE L . n B 2 107 LYS 107 107 107 LYS LYS L . n C 3 1 ASN 1 334 334 ASN ASN R . n C 3 2 LEU 2 335 335 LEU LEU R . n C 3 3 CYS 3 336 336 CYS CYS R . n C 3 4 PRO 4 337 337 PRO PRO R . n C 3 5 PHE 5 338 338 PHE PHE R . n C 3 6 GLY 6 339 339 GLY GLY R . n C 3 7 GLU 7 340 340 GLU GLU R . n C 3 8 VAL 8 341 341 VAL VAL R . n C 3 9 PHE 9 342 342 PHE PHE R . n C 3 10 ASN 10 343 343 ASN ASN R . n C 3 11 ALA 11 344 344 ALA ALA R . n C 3 12 THR 12 345 345 THR THR R . n C 3 13 ARG 13 346 346 ARG ARG R . n C 3 14 PHE 14 347 347 PHE PHE R . n C 3 15 ALA 15 348 348 ALA ALA R . n C 3 16 SER 16 349 349 SER SER R . n C 3 17 VAL 17 350 350 VAL VAL R . n C 3 18 TYR 18 351 351 TYR TYR R . n C 3 19 ALA 19 352 352 ALA ALA R . n C 3 20 TRP 20 353 353 TRP TRP R . n C 3 21 ASN 21 354 354 ASN ASN R . n C 3 22 ARG 22 355 355 ARG ARG R . n C 3 23 LYS 23 356 356 LYS LYS R . n C 3 24 ARG 24 357 357 ARG ARG R . n C 3 25 ILE 25 358 358 ILE ILE R . n C 3 26 SER 26 359 359 SER SER R . n C 3 27 ASN 27 360 360 ASN ASN R . n C 3 28 CYS 28 361 361 CYS CYS R . n C 3 29 VAL 29 362 362 VAL VAL R . n C 3 30 ALA 30 363 363 ALA ALA R . n C 3 31 ASP 31 364 364 ASP ASP R . n C 3 32 TYR 32 365 365 TYR TYR R . n C 3 33 SER 33 366 366 SER SER R . n C 3 34 VAL 34 367 367 VAL VAL R . n C 3 35 LEU 35 368 368 LEU LEU R . n C 3 36 TYR 36 369 369 TYR TYR R . n C 3 37 ASN 37 370 370 ASN ASN R . n C 3 38 SER 38 371 371 SER SER R . n C 3 39 ALA 39 372 372 ALA ALA R . n C 3 40 SER 40 373 373 SER SER R . n C 3 41 PHE 41 374 374 PHE PHE R . n C 3 42 SER 42 375 375 SER SER R . n C 3 43 THR 43 376 376 THR THR R . n C 3 44 PHE 44 377 377 PHE PHE R . n C 3 45 LYS 45 378 378 LYS LYS R . n C 3 46 CYS 46 379 379 CYS CYS R . n C 3 47 TYR 47 380 380 TYR TYR R . n C 3 48 GLY 48 381 381 GLY GLY R . n C 3 49 VAL 49 382 382 VAL VAL R . n C 3 50 SER 50 383 383 SER SER R . n C 3 51 PRO 51 384 384 PRO PRO R . n C 3 52 THR 52 385 385 THR THR R . n C 3 53 LYS 53 386 386 LYS LYS R . n C 3 54 LEU 54 387 387 LEU LEU R . n C 3 55 ASN 55 388 388 ASN ASN R . n C 3 56 ASP 56 389 389 ASP ASP R . n C 3 57 LEU 57 390 390 LEU LEU R . n C 3 58 CYS 58 391 391 CYS CYS R . n C 3 59 PHE 59 392 392 PHE PHE R . n C 3 60 THR 60 393 393 THR THR R . n C 3 61 ASN 61 394 394 ASN ASN R . n C 3 62 VAL 62 395 395 VAL VAL R . n C 3 63 TYR 63 396 396 TYR TYR R . n C 3 64 ALA 64 397 397 ALA ALA R . n C 3 65 ASP 65 398 398 ASP ASP R . n C 3 66 SER 66 399 399 SER SER R . n C 3 67 PHE 67 400 400 PHE PHE R . n C 3 68 VAL 68 401 401 VAL VAL R . n C 3 69 ILE 69 402 402 ILE ILE R . n C 3 70 ARG 70 403 403 ARG ARG R . n C 3 71 GLY 71 404 404 GLY GLY R . n C 3 72 ASP 72 405 405 ASP ASP R . n C 3 73 GLU 73 406 406 GLU GLU R . n C 3 74 VAL 74 407 407 VAL VAL R . n C 3 75 ARG 75 408 408 ARG ARG R . n C 3 76 GLN 76 409 409 GLN GLN R . n C 3 77 ILE 77 410 410 ILE ILE R . n C 3 78 ALA 78 411 411 ALA ALA R . n C 3 79 PRO 79 412 412 PRO PRO R . n C 3 80 GLY 80 413 413 GLY GLY R . n C 3 81 GLN 81 414 414 GLN GLN R . n C 3 82 THR 82 415 415 THR THR R . n C 3 83 GLY 83 416 416 GLY GLY R . n C 3 84 ASN 84 417 417 ASN ASN R . n C 3 85 ILE 85 418 418 ILE ILE R . n C 3 86 ALA 86 419 419 ALA ALA R . n C 3 87 ASP 87 420 420 ASP ASP R . n C 3 88 TYR 88 421 421 TYR TYR R . n C 3 89 ASN 89 422 422 ASN ASN R . n C 3 90 TYR 90 423 423 TYR TYR R . n C 3 91 LYS 91 424 424 LYS LYS R . n C 3 92 LEU 92 425 425 LEU LEU R . n C 3 93 PRO 93 426 426 PRO PRO R . n C 3 94 ASP 94 427 427 ASP ASP R . n C 3 95 ASP 95 428 428 ASP ASP R . n C 3 96 PHE 96 429 429 PHE PHE R . n C 3 97 THR 97 430 430 THR THR R . n C 3 98 GLY 98 431 431 GLY GLY R . n C 3 99 CYS 99 432 432 CYS CYS R . n C 3 100 VAL 100 433 433 VAL VAL R . n C 3 101 ILE 101 434 434 ILE ILE R . n C 3 102 ALA 102 435 435 ALA ALA R . n C 3 103 TRP 103 436 436 TRP TRP R . n C 3 104 ASN 104 437 437 ASN ASN R . n C 3 105 SER 105 438 438 SER SER R . n C 3 106 ASN 106 439 439 ASN ASN R . n C 3 107 ASN 107 440 440 ASN ASN R . n C 3 108 LEU 108 441 441 LEU LEU R . n C 3 109 ASP 109 442 442 ASP ASP R . n C 3 110 SER 110 443 443 SER SER R . n C 3 111 LYS 111 444 444 LYS LYS R . n C 3 112 VAL 112 445 445 VAL VAL R . n C 3 113 GLY 113 446 446 GLY GLY R . n C 3 114 GLY 114 447 447 GLY GLY R . n C 3 115 ASN 115 448 448 ASN ASN R . n C 3 116 TYR 116 449 449 TYR TYR R . n C 3 117 ASN 117 450 450 ASN ASN R . n C 3 118 TYR 118 451 451 TYR TYR R . n C 3 119 LEU 119 452 452 LEU LEU R . n C 3 120 TYR 120 453 453 TYR TYR R . n C 3 121 ARG 121 454 454 ARG ARG R . n C 3 122 LEU 122 455 455 LEU LEU R . n C 3 123 PHE 123 456 456 PHE PHE R . n C 3 124 ARG 124 457 457 ARG ARG R . n C 3 125 LYS 125 458 458 LYS LYS R . n C 3 126 SER 126 459 459 SER SER R . n C 3 127 ASN 127 460 460 ASN ASN R . n C 3 128 LEU 128 461 461 LEU LEU R . n C 3 129 LYS 129 462 462 LYS LYS R . n C 3 130 PRO 130 463 463 PRO PRO R . n C 3 131 PHE 131 464 464 PHE PHE R . n C 3 132 GLU 132 465 465 GLU GLU R . n C 3 133 ARG 133 466 466 ARG ARG R . n C 3 134 ASP 134 467 467 ASP ASP R . n C 3 135 ILE 135 468 468 ILE ILE R . n C 3 136 SER 136 469 469 SER SER R . n C 3 137 THR 137 470 470 THR THR R . n C 3 138 GLU 138 471 471 GLU GLU R . n C 3 139 ILE 139 472 472 ILE ILE R . n C 3 140 TYR 140 473 473 TYR TYR R . n C 3 141 GLN 141 474 474 GLN GLN R . n C 3 142 ALA 142 475 475 ALA ALA R . n C 3 143 GLY 143 476 476 GLY GLY R . n C 3 144 SER 144 477 477 SER SER R . n C 3 145 THR 145 478 478 THR THR R . n C 3 146 PRO 146 479 479 PRO PRO R . n C 3 147 CYS 147 480 480 CYS CYS R . n C 3 148 ASN 148 481 481 ASN ASN R . n C 3 149 GLY 149 482 482 GLY GLY R . n C 3 150 VAL 150 483 483 VAL VAL R . n C 3 151 LYS 151 484 484 LYS LYS R . n C 3 152 GLY 152 485 485 GLY GLY R . n C 3 153 PHE 153 486 486 PHE PHE R . n C 3 154 ASN 154 487 487 ASN ASN R . n C 3 155 CYS 155 488 488 CYS CYS R . n C 3 156 TYR 156 489 489 TYR TYR R . n C 3 157 PHE 157 490 490 PHE PHE R . n C 3 158 PRO 158 491 491 PRO PRO R . n C 3 159 LEU 159 492 492 LEU LEU R . n C 3 160 GLN 160 493 493 GLN GLN R . n C 3 161 SER 161 494 494 SER SER R . n C 3 162 TYR 162 495 495 TYR TYR R . n C 3 163 GLY 163 496 496 GLY GLY R . n C 3 164 PHE 164 497 497 PHE PHE R . n C 3 165 GLN 165 498 498 GLN GLN R . n C 3 166 PRO 166 499 499 PRO PRO R . n C 3 167 THR 167 500 500 THR THR R . n C 3 168 TYR 168 501 501 TYR TYR R . n C 3 169 GLY 169 502 502 GLY GLY R . n C 3 170 VAL 170 503 503 VAL VAL R . n C 3 171 GLY 171 504 504 GLY GLY R . n C 3 172 TYR 172 505 505 TYR TYR R . n C 3 173 GLN 173 506 506 GLN GLN R . n C 3 174 PRO 174 507 507 PRO PRO R . n C 3 175 TYR 175 508 508 TYR TYR R . n C 3 176 ARG 176 509 509 ARG ARG R . n C 3 177 VAL 177 510 510 VAL VAL R . n C 3 178 VAL 178 511 511 VAL VAL R . n C 3 179 VAL 179 512 512 VAL VAL R . n C 3 180 LEU 180 513 513 LEU LEU R . n C 3 181 SER 181 514 514 SER SER R . n C 3 182 PHE 182 515 515 PHE PHE R . n C 3 183 GLU 183 516 516 GLU GLU R . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email liupulan1995@163.com _pdbx_contact_author.name_first pulan _pdbx_contact_author.name_last liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0046-6997 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-10-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 7WB5 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7WB5 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WB5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 222776 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'local structure of R33 and RBD' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7WB5 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 1500 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WB5 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WB5 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 L _pdbx_validate_close_contact.auth_comp_id_1 ILE _pdbx_validate_close_contact.auth_seq_id_1 21 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 72 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 L _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 80 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 L _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 80 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 L _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 80 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.07 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation -12.63 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.40 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO H 14 ? ? -65.33 86.11 2 1 SER H 25 ? ? -174.28 149.19 3 1 MET H 34 ? ? -142.62 57.31 4 1 ASN H 35 ? ? -43.65 151.04 5 1 PHE H 64 ? ? -92.08 57.56 6 1 SER H 75 ? ? 70.38 -9.28 7 1 ALA H 79 ? ? -142.24 47.29 8 1 ALA H 97 ? ? -162.93 108.46 9 1 ARG H 98 ? ? -68.65 99.32 10 1 SER L 30 ? ? -29.89 -55.04 11 1 PRO L 44 ? ? -53.22 170.70 12 1 ALA L 51 ? ? 72.89 -8.83 13 1 SER L 52 ? ? -121.43 -53.20 14 1 SER L 60 ? ? -80.28 49.27 15 1 ASP L 82 ? ? -90.26 -68.49 16 1 PHE L 83 ? ? 33.44 46.16 17 1 ALA R 352 ? ? -112.34 53.09 18 1 LEU R 368 ? ? -53.03 -71.00 19 1 SER R 375 ? ? -149.75 10.25 20 1 THR R 376 ? ? -156.95 49.62 21 1 LYS R 378 ? ? 6.79 94.23 22 1 THR R 385 ? ? -57.76 -79.46 23 1 LEU R 387 ? ? -141.55 -20.61 24 1 ILE R 410 ? ? -100.28 66.28 25 1 TYR R 421 ? ? -109.68 49.52 26 1 ASN R 422 ? ? -167.74 -89.62 27 1 ASP R 428 ? ? -114.04 55.78 28 1 VAL R 433 ? ? -115.61 60.53 29 1 ALA R 435 ? ? -171.19 131.99 30 1 VAL R 445 ? ? -62.31 95.71 31 1 LEU R 455 ? ? -112.57 -106.13 32 1 LYS R 458 ? ? -92.86 37.83 33 1 SER R 459 ? ? -165.29 105.38 34 1 ASN R 460 ? ? -57.41 108.93 35 1 PRO R 463 ? ? -30.34 129.46 36 1 PHE R 464 ? ? 49.87 71.64 37 1 ALA R 475 ? ? -130.46 -51.87 38 1 SER R 477 ? ? -163.63 -91.17 39 1 THR R 478 ? ? -38.46 110.13 40 1 ASN R 481 ? ? 62.64 93.80 41 1 PRO R 491 ? ? -65.69 -72.58 42 1 LEU R 492 ? ? -49.75 94.62 43 1 TYR R 501 ? ? -38.13 146.58 44 1 VAL R 503 ? ? -68.57 6.15 45 1 LEU R 513 ? ? -103.12 75.60 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PHE H 106 ? ? ASP H 107 ? ? -146.68 2 1 VAL L 29 ? ? SER L 30 ? ? -139.90 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? 14 'PARTICLE SELECTION' ? ? ? 1 1 1 15 'VOLUME SELECTION' ? ? ? 1 1 1 16 'SERIES ALIGNMENT' ? ? ? 1 1 1 17 'MOLECULAR REPLACEMENT' ? ? ? 1 1 1 18 'LATTICE DISTORTION CORRECTION' ? ? ? 1 1 1 19 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 A NAG 1 R NAG 517 n D 4 NAG 2 A NAG 2 R NAG 518 n D 4 BMA 3 A BMA 3 R BMA 519 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #