HEADER OXIDOREDUCTASE 20-DEC-21 7WCV TITLE CO-CRYSTAL STRUCTURE OF FTO BOUND TO 6E COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN,U6 SMALL NUCLEAR RNA COMPND 5 (2'-O-METHYLADENOSINE-N(6)-)-DEMETHYLASE FTO,U6 SMALL NUCLEAR RNA COMPND 6 N(6)-METHYLADENOSINE-DEMETHYLASE FTO,MRNA (2'-O-METHYLADENOSINE-N(6)- COMPND 7 )-DEMETHYLASE FTO,M6A(M)-DEMETHYLASE FTO,MRNA N(6)-METHYLADENOSINE COMPND 8 DEMETHYLASE FTO,TRNA N1-METHYL ADENINE DEMETHYLASE FTO; COMPND 9 EC: 1.14.11.-,1.14.11.53; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTO, KIAA1752; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA DEMETHYLASE, RNA BINDING PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-G.YANG,J.H.GAN REVDAT 4 29-NOV-23 7WCV 1 REMARK REVDAT 3 24-AUG-22 7WCV 1 JRNL REVDAT 2 03-AUG-22 7WCV 1 JRNL REVDAT 1 06-JUL-22 7WCV 0 JRNL AUTH Z.LIU,Z.DUAN,D.ZHANG,P.XIAO,T.ZHANG,H.XU,C.H.WANG,G.W.RAO, JRNL AUTH 2 J.GAN,Y.HUANG,C.G.YANG,Z.DONG JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIPS AND ANTILEUKEMIA EFFECTS OF JRNL TITL 2 THE TRICYCLIC BENZOIC ACID FTO INHIBITORS. JRNL REF J.MED.CHEM. V. 65 10638 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35793358 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00848 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8170 - 4.9478 1.00 2652 123 0.1722 0.1955 REMARK 3 2 4.9478 - 3.9304 0.99 2629 131 0.1641 0.1909 REMARK 3 3 3.9304 - 3.4345 0.98 2600 137 0.2151 0.2862 REMARK 3 4 3.4345 - 3.1209 1.00 2631 157 0.2243 0.2563 REMARK 3 5 3.1209 - 2.8974 1.00 2620 145 0.2310 0.2755 REMARK 3 6 2.8974 - 2.7267 0.99 2609 136 0.2427 0.2723 REMARK 3 7 2.7267 - 2.5903 0.99 2643 148 0.2526 0.2968 REMARK 3 8 2.5903 - 2.4776 0.99 2597 143 0.2578 0.2917 REMARK 3 9 2.4776 - 2.3822 1.00 2636 148 0.2859 0.2859 REMARK 3 10 2.3822 - 2.3001 1.00 2674 126 0.3107 0.3443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3476 REMARK 3 ANGLE : 0.646 4740 REMARK 3 CHIRALITY : 0.047 524 REMARK 3 PLANARITY : 0.006 615 REMARK 3 DIHEDRAL : 15.475 2055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.4015 -24.3921 -2.2658 REMARK 3 T TENSOR REMARK 3 T11: 0.4083 T22: 0.4130 REMARK 3 T33: 0.3754 T12: 0.0324 REMARK 3 T13: -0.0382 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 3.9173 L22: 2.6793 REMARK 3 L33: 1.5707 L12: 1.9787 REMARK 3 L13: 1.4145 L23: 0.8800 REMARK 3 S TENSOR REMARK 3 S11: 0.2519 S12: 0.1506 S13: -0.4474 REMARK 3 S21: 0.2596 S22: 0.0094 S23: -0.1535 REMARK 3 S31: 0.3380 S32: 0.2351 S33: -0.2424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300025955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9735 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 28.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4KQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 5.6, 11.5% REMARK 280 (W/V) POLYETHYLENE GLYCOL (PEG) 3350,8% ISOPROPANOL., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.87950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.92230 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.91333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.87950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.92230 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.91333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.87950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.92230 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.91333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.84460 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.82667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.84460 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.82667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.84460 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.82667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 ASN A 164 REMARK 465 GLU A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 LEU A 262 REMARK 465 GLU A 263 REMARK 465 ALA A 503 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 THR A 128 OG1 CG2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLN A 210 CG CD OE1 NE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLN A 339 CG CD OE1 NE2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 ASN A 387 CG OD1 ND2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 389 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 GLN A 430 CG CD OE1 NE2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLN A 457 CG CD OE1 NE2 REMARK 470 ARG A 459 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 462 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 464 CG CD1 CD2 REMARK 470 GLN A 468 CG CD OE1 NE2 REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 ASP A 479 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 116 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 119 74.03 -68.92 REMARK 500 TRP A 278 -5.67 72.57 REMARK 500 ASP A 299 -125.25 60.03 REMARK 500 TRP A 378 -61.85 -125.17 REMARK 500 LYS A 391 4.83 -64.57 REMARK 500 CYS A 392 -46.66 -139.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 HIS A 307 NE2 81.0 REMARK 620 N 1 DBREF 7WCV A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 7WCV HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 7WCV MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 491 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 491 GLY SER HIS MET THR PRO LYS ASP ASP GLU PHE TYR GLN SEQRES 3 A 491 GLN TRP GLN LEU LYS TYR PRO LYS LEU ILE LEU ARG GLU SEQRES 4 A 491 ALA SER SER VAL SER GLU GLU LEU HIS LYS GLU VAL GLN SEQRES 5 A 491 GLU ALA PHE LEU THR LEU HIS LYS HIS GLY CYS LEU PHE SEQRES 6 A 491 ARG ASP LEU VAL ARG ILE GLN GLY LYS ASP LEU LEU THR SEQRES 7 A 491 PRO VAL SER ARG ILE LEU ILE GLY ASN PRO GLY CYS THR SEQRES 8 A 491 TYR LYS TYR LEU ASN THR ARG LEU PHE THR VAL PRO TRP SEQRES 9 A 491 PRO VAL LYS GLY SER ASN ILE LYS HIS THR GLU ALA GLU SEQRES 10 A 491 ILE ALA ALA ALA CYS GLU THR PHE LEU LYS LEU ASN ASP SEQRES 11 A 491 TYR LEU GLN ILE GLU THR ILE GLN ALA LEU GLU GLU LEU SEQRES 12 A 491 ALA ALA LYS GLU LYS ALA ASN GLU ASP ALA VAL PRO LEU SEQRES 13 A 491 CYS MET SER ALA ASP PHE PRO ARG VAL GLY MET GLY SER SEQRES 14 A 491 SER TYR ASN GLY GLN ASP GLU VAL ASP ILE LYS SER ARG SEQRES 15 A 491 ALA ALA TYR ASN VAL THR LEU LEU ASN PHE MET ASP PRO SEQRES 16 A 491 GLN LYS MET PRO TYR LEU LYS GLU GLU PRO TYR PHE GLY SEQRES 17 A 491 MET GLY LYS MET ALA VAL SER TRP HIS HIS ASP GLU ASN SEQRES 18 A 491 LEU VAL ASP ARG SER ALA VAL ALA VAL TYR SER TYR SER SEQRES 19 A 491 CYS GLU GLY PRO GLU GLU GLU SER GLU ASP ASP SER HIS SEQRES 20 A 491 LEU GLU GLY ARG ASP PRO ASP ILE TRP HIS VAL GLY PHE SEQRES 21 A 491 LYS ILE SER TRP ASP ILE GLU THR PRO GLY LEU ALA ILE SEQRES 22 A 491 PRO LEU HIS GLN GLY ASP CYS TYR PHE MET LEU ASP ASP SEQRES 23 A 491 LEU ASN ALA THR HIS GLN HIS CYS VAL LEU ALA GLY SER SEQRES 24 A 491 GLN PRO ARG PHE SER SER THR HIS ARG VAL ALA GLU CYS SEQRES 25 A 491 SER THR GLY THR LEU ASP TYR ILE LEU GLN ARG CYS GLN SEQRES 26 A 491 LEU ALA LEU GLN ASN VAL CYS ASP ASP VAL ASP ASN ASP SEQRES 27 A 491 ASP VAL SER LEU LYS SER PHE GLU PRO ALA VAL LEU LYS SEQRES 28 A 491 GLN GLY GLU GLU ILE HIS ASN GLU VAL GLU PHE GLU TRP SEQRES 29 A 491 LEU ARG GLN PHE TRP PHE GLN GLY ASN ARG TYR ARG LYS SEQRES 30 A 491 CYS THR ASP TRP TRP CYS GLN PRO MET ALA GLN LEU GLU SEQRES 31 A 491 ALA LEU TRP LYS LYS MET GLU GLY VAL THR ASN ALA VAL SEQRES 32 A 491 LEU HIS GLU VAL LYS ARG GLU GLY LEU PRO VAL GLU GLN SEQRES 33 A 491 ARG ASN GLU ILE LEU THR ALA ILE LEU ALA SER LEU THR SEQRES 34 A 491 ALA ARG GLN ASN LEU ARG ARG GLU TRP HIS ALA ARG CYS SEQRES 35 A 491 GLN SER ARG ILE ALA ARG THR LEU PRO ALA ASP GLN LYS SEQRES 36 A 491 PRO GLU CYS ARG PRO TYR TRP GLU LYS ASP ASP ALA SER SEQRES 37 A 491 MET PRO LEU PRO PHE ASP LEU THR ASP ILE VAL SER GLU SEQRES 38 A 491 LEU ARG GLY GLN LEU LEU GLU ALA LYS PRO HET AKG A 601 10 HET MN A 602 1 HET 943 A 603 24 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM MN MANGANESE (II) ION HETNAM 943 2-[[2,6-BIS(CHLORANYL)-4-PYRIDIN-4-YL- HETNAM 2 943 PHENYL]AMINO]BENZOIC ACID FORMUL 2 AKG C5 H6 O5 FORMUL 3 MN MN 2+ FORMUL 4 943 C18 H12 CL2 N2 O2 FORMUL 5 HOH *26(H2 O) HELIX 1 AA1 ASP A 35 TYR A 46 1 12 HELIX 2 AA2 GLU A 53 VAL A 57 5 5 HELIX 3 AA3 SER A 58 HIS A 75 1 18 HELIX 4 AA4 GLU A 129 ALA A 163 1 35 HELIX 5 AA5 ASP A 189 ALA A 197 1 9 HELIX 6 AA6 ASP A 208 MET A 212 5 5 HELIX 7 AA7 ASP A 300 THR A 304 1 5 HELIX 8 AA8 THR A 330 LEU A 342 1 13 HELIX 9 AA9 GLN A 343 VAL A 345 5 3 HELIX 10 AB1 GLU A 360 TRP A 378 1 19 HELIX 11 AB2 TRP A 378 GLN A 385 1 8 HELIX 12 AB3 GLY A 386 CYS A 392 5 7 HELIX 13 AB4 TRP A 396 LYS A 422 1 27 HELIX 14 AB5 PRO A 427 GLN A 457 1 31 HELIX 15 AB6 SER A 458 THR A 463 1 6 HELIX 16 AB7 LEU A 489 GLU A 502 1 14 SHEET 1 AA1 5 HIS A 30 MET A 31 0 SHEET 2 AA1 5 GLY A 284 PRO A 288 1 O ALA A 286 N MET A 31 SHEET 3 AA1 5 HIS A 271 ILE A 276 -1 N VAL A 272 O ILE A 287 SHEET 4 AA1 5 HIS A 305 LEU A 310 -1 O LEU A 310 N HIS A 271 SHEET 5 AA1 5 MET A 226 HIS A 231 -1 N ALA A 227 O VAL A 309 SHEET 1 AA2 7 LEU A 49 ARG A 52 0 SHEET 2 AA2 7 ASP A 293 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AA2 7 VAL A 242 SER A 248 -1 N SER A 246 O ASP A 293 SHEET 4 AA2 7 ARG A 316 ARG A 322 -1 O HIS A 321 N ALA A 243 SHEET 5 AA2 7 VAL A 201 MET A 207 -1 N ASN A 205 O SER A 318 SHEET 6 AA2 7 SER A 95 GLY A 100 -1 N ILE A 99 O THR A 202 SHEET 7 AA2 7 VAL A 116 PRO A 117 1 O VAL A 116 N LEU A 98 SHEET 1 AA3 2 LEU A 82 ILE A 85 0 SHEET 2 AA3 2 LYS A 88 LEU A 91 -1 O LEU A 90 N VAL A 83 SHEET 1 AA4 2 THR A 105 TYR A 108 0 SHEET 2 AA4 2 THR A 111 PHE A 114 -1 O LEU A 113 N TYR A 106 LINK NE2 HIS A 231 MN MN A 602 1555 1555 2.68 LINK NE2 HIS A 307 MN MN A 602 1555 1555 2.55 CISPEP 1 ARG A 473 PRO A 474 0 0.90 CRYST1 141.759 141.759 83.740 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007054 0.004073 0.000000 0.00000 SCALE2 0.000000 0.008146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011942 0.00000