HEADER VIRAL PROTEIN 20-DEC-21 7WD1 TITLE CRYSTAL STRUCTURE OF R14 BOUND TO SARS-COV-2 RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: R14; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, RBD, NANOBODY, COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.WANG,G.F.GAO,J.X.QI,C.SU,H.H.LIU,L.L.WU REVDAT 3 29-NOV-23 7WD1 1 REMARK REVDAT 2 05-JUL-23 7WD1 1 JRNL REVDAT 1 21-DEC-22 7WD1 0 JRNL AUTH H.LIU,L.WU,B.LIU,K.XU,W.LEI,J.DENG,X.RONG,P.DU,L.WANG, JRNL AUTH 2 D.WANG,X.ZHANG,C.SU,Y.BI,H.CHEN,W.J.LIU,J.QI,Q.CUI,S.QI, JRNL AUTH 3 R.FAN,J.JIANG,G.WU,G.F.GAO,Q.WANG JRNL TITL TWO PAN-SARS-COV-2 NANOBODIES AND THEIR MULTIVALENT JRNL TITL 2 DERIVATIVES EFFECTIVELY PREVENT OMICRON INFECTIONS IN MICE. JRNL REF CELL REP MED V. 4 00918 2023 JRNL REFN ESSN 2666-3791 JRNL PMID 36702124 JRNL DOI 10.1016/J.XCRM.2023.100918 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 35975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2200 - 5.8800 1.00 2976 173 0.1954 0.2523 REMARK 3 2 5.8800 - 4.6600 1.00 2863 154 0.1637 0.2017 REMARK 3 3 4.6600 - 4.0800 1.00 2834 138 0.1553 0.1817 REMARK 3 4 4.0800 - 3.7000 1.00 2806 134 0.1802 0.2019 REMARK 3 5 3.7000 - 3.4400 1.00 2808 138 0.2003 0.2316 REMARK 3 6 3.4400 - 3.2300 1.00 2790 147 0.2035 0.2433 REMARK 3 7 3.2300 - 3.0700 1.00 2731 181 0.2275 0.2626 REMARK 3 8 3.0700 - 2.9400 1.00 2790 148 0.2539 0.3080 REMARK 3 9 2.9400 - 2.8300 1.00 2743 149 0.2485 0.2787 REMARK 3 10 2.8300 - 2.7300 0.99 2720 158 0.2504 0.2896 REMARK 3 11 2.7300 - 2.6400 0.94 2617 133 0.2516 0.3055 REMARK 3 12 2.6400 - 2.5700 0.70 1950 83 0.2568 0.3287 REMARK 3 13 2.5700 - 2.5000 0.56 1535 76 0.2510 0.2724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.308 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5276 REMARK 3 ANGLE : 0.640 7186 REMARK 3 CHIRALITY : 0.272 762 REMARK 3 PLANARITY : 0.004 930 REMARK 3 DIHEDRAL : 20.827 1912 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1527 -14.9163 6.7925 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.3605 REMARK 3 T33: 0.2776 T12: 0.0077 REMARK 3 T13: -0.0852 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8895 L22: 0.1295 REMARK 3 L33: 0.0347 L12: -0.0365 REMARK 3 L13: -0.3388 L23: 0.0425 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.3106 S13: -0.1523 REMARK 3 S21: 0.0243 S22: 0.0273 S23: -0.0329 REMARK 3 S31: -0.0456 S32: 0.1143 S33: -0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2290 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10% W/V N-OCTYL-B-D-GLUCOSIDE, 0.1M REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE (PH 5.5), 22% W/V POLYETHYLENE REMARK 280 GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.83000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.91500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.91500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 145.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 333 REMARK 465 LYS A 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 205 O HOH C 235 1.83 REMARK 500 O HOH A 641 O HOH D 232 1.88 REMARK 500 N ALA C 40 O HOH C 201 2.02 REMARK 500 O HOH D 242 O HOH D 258 2.04 REMARK 500 O HOH B 614 O HOH C 227 2.07 REMARK 500 N GLY B 446 O HOH B 601 2.16 REMARK 500 O HOH C 230 O HOH C 240 2.18 REMARK 500 O HOH A 641 O HOH D 241 2.19 REMARK 500 O HOH D 249 O HOH D 259 2.19 REMARK 500 O HOH D 220 O HOH D 225 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 50.83 -117.68 REMARK 500 ALA A 372 -8.87 67.31 REMARK 500 ASN A 422 -55.31 -126.53 REMARK 500 ASP A 428 35.65 -95.67 REMARK 500 ALA B 352 54.44 -113.83 REMARK 500 ALA B 372 -2.18 61.16 REMARK 500 PHE B 377 86.36 -152.04 REMARK 500 ASN B 422 -55.43 -127.26 REMARK 500 ASP B 428 42.14 -92.43 REMARK 500 CYS D 112 67.45 -119.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 527 LYS B 528 146.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 7WD1 A 333 528 UNP P0DTC2 SPIKE_SARS2 333 528 DBREF 7WD1 B 333 528 UNP P0DTC2 SPIKE_SARS2 333 528 DBREF 7WD1 C 1 130 PDB 7WD1 7WD1 1 130 DBREF 7WD1 D 1 130 PDB 7WD1 7WD1 1 130 SEQRES 1 A 196 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 196 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 196 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 196 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 196 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 196 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 196 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 196 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 196 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 196 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 196 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 196 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 196 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 196 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 196 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 196 LYS SEQRES 1 B 196 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 196 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 196 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 196 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 196 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 196 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 196 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 196 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 196 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 196 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 196 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 196 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 196 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 196 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 196 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 B 196 LYS SEQRES 1 C 130 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 130 PRO GLY GLY SER LEU ARG LEU SER CYS ALA VAL SER GLY SEQRES 3 C 130 PHE THR LEU ASP TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 C 130 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 C 130 SER SER ASP GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 6 C 130 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 130 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 C 130 ALA LEU TYR TYR CYS ALA ALA THR PRO ALA THR TYR TYR SEQRES 9 C 130 SER GLY ARG TYR TYR TYR GLN CYS PRO ALA GLY GLY MET SEQRES 10 C 130 ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 D 130 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 130 PRO GLY GLY SER LEU ARG LEU SER CYS ALA VAL SER GLY SEQRES 3 D 130 PHE THR LEU ASP TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 D 130 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 D 130 SER SER ASP GLY SER THR SER TYR ALA ASP SER VAL LYS SEQRES 6 D 130 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 130 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 130 ALA LEU TYR TYR CYS ALA ALA THR PRO ALA THR TYR TYR SEQRES 9 D 130 SER GLY ARG TYR TYR TYR GLN CYS PRO ALA GLY GLY MET SEQRES 10 D 130 ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG E 1 14 HET FUC E 2 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 7 HOH *200(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 SER A 383 ASN A 388 1 6 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 PRO B 337 ASN B 343 1 7 HELIX 10 AB1 SER B 349 TRP B 353 5 5 HELIX 11 AB2 ASP B 364 ASN B 370 1 7 HELIX 12 AB3 PRO B 384 ASN B 388 5 5 HELIX 13 AB4 ASP B 405 ILE B 410 5 6 HELIX 14 AB5 GLY B 416 ASN B 422 1 7 HELIX 15 AB6 SER B 438 SER B 443 1 6 HELIX 16 AB7 GLY B 502 TYR B 505 5 4 HELIX 17 AB8 ASP C 62 LYS C 65 5 4 HELIX 18 AB9 LYS C 87 THR C 91 5 5 HELIX 19 AC1 LYS D 87 THR D 91 5 5 HELIX 20 AC2 PRO D 113 MET D 117 5 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 5 ASN B 354 ILE B 358 0 SHEET 2 AA5 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA5 5 PRO B 507 GLU B 516 -1 O SER B 514 N TYR B 396 SHEET 4 AA5 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA5 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA6 3 CYS B 361 VAL B 362 0 SHEET 2 AA6 3 VAL B 524 CYS B 525 1 O CYS B 525 N CYS B 361 SHEET 3 AA6 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA7 2 LEU B 452 ARG B 454 0 SHEET 2 AA7 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA8 2 TYR B 473 GLN B 474 0 SHEET 2 AA8 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA9 4 GLN C 3 SER C 7 0 SHEET 2 AA9 4 LEU C 18 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 AA9 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA9 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AB1 6 GLY C 10 VAL C 12 0 SHEET 2 AB1 6 THR C 124 VAL C 128 1 O THR C 127 N GLY C 10 SHEET 3 AB1 6 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 124 SHEET 4 AB1 6 TYR C 32 GLN C 39 -1 N PHE C 37 O TYR C 95 SHEET 5 AB1 6 GLU C 46 SER C 52 -1 O GLU C 46 N ARG C 38 SHEET 6 AB1 6 THR C 58 TYR C 60 -1 O SER C 59 N CYS C 50 SHEET 1 AB2 4 GLY C 10 VAL C 12 0 SHEET 2 AB2 4 THR C 124 VAL C 128 1 O THR C 127 N GLY C 10 SHEET 3 AB2 4 ALA C 92 PRO C 100 -1 N TYR C 94 O THR C 124 SHEET 4 AB2 4 TYR C 119 TRP C 120 -1 O TYR C 119 N ALA C 98 SHEET 1 AB3 2 THR C 102 TYR C 104 0 SHEET 2 AB3 2 ARG C 107 TYR C 109 -1 O ARG C 107 N TYR C 104 SHEET 1 AB4 4 GLN D 3 SER D 7 0 SHEET 2 AB4 4 LEU D 18 SER D 25 -1 O ALA D 23 N GLN D 5 SHEET 3 AB4 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AB4 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AB5 6 GLY D 10 VAL D 12 0 SHEET 2 AB5 6 THR D 124 VAL D 128 1 O THR D 127 N GLY D 10 SHEET 3 AB5 6 ALA D 92 PRO D 100 -1 N TYR D 94 O THR D 124 SHEET 4 AB5 6 TYR D 32 GLN D 39 -1 N PHE D 37 O TYR D 95 SHEET 5 AB5 6 GLU D 46 SER D 52 -1 O VAL D 48 N TRP D 36 SHEET 6 AB5 6 THR D 58 TYR D 60 -1 O SER D 59 N CYS D 50 SHEET 1 AB6 4 GLY D 10 VAL D 12 0 SHEET 2 AB6 4 THR D 124 VAL D 128 1 O THR D 127 N GLY D 10 SHEET 3 AB6 4 ALA D 92 PRO D 100 -1 N TYR D 94 O THR D 124 SHEET 4 AB6 4 TYR D 119 TRP D 120 -1 O TYR D 119 N ALA D 98 SHEET 1 AB7 2 THR D 102 TYR D 104 0 SHEET 2 AB7 2 ARG D 107 TYR D 109 -1 O ARG D 107 N TYR D 104 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.04 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 6 CYS B 379 CYS B 432 1555 1555 2.04 SSBOND 7 CYS B 391 CYS B 525 1555 1555 2.04 SSBOND 8 CYS B 480 CYS B 488 1555 1555 2.04 SSBOND 9 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 10 CYS C 50 CYS C 112 1555 1555 2.06 SSBOND 11 CYS D 22 CYS D 96 1555 1555 2.04 SSBOND 12 CYS D 50 CYS D 112 1555 1555 2.05 LINK ND2 ASN A 343 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 343 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 2 1555 1555 1.44 CRYST1 92.450 92.450 218.745 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010817 0.006245 0.000000 0.00000 SCALE2 0.000000 0.012490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004572 0.00000