HEADER VIRAL PROTEIN 20-DEC-21 7WD2 TITLE CRYSTAL STRUCTURE OF S43 BOUND TO SARS-COV-2 RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-RON NANOBODY; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_COMMON: ALPACA; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, RBD, S43, COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.WANG,G.F.GAO,J.X.QI,C.SU,H.H.LIU,L.L.WU REVDAT 3 29-NOV-23 7WD2 1 REMARK REVDAT 2 05-JUL-23 7WD2 1 JRNL REVDAT 1 21-DEC-22 7WD2 0 JRNL AUTH H.LIU,L.WU,B.LIU,K.XU,W.LEI,J.DENG,X.RONG,P.DU,L.WANG, JRNL AUTH 2 D.WANG,X.ZHANG,C.SU,Y.BI,H.CHEN,W.J.LIU,J.QI,Q.CUI,S.QI, JRNL AUTH 3 R.FAN,J.JIANG,G.WU,G.F.GAO,Q.WANG JRNL TITL TWO PAN-SARS-COV-2 NANOBODIES AND THEIR MULTIVALENT JRNL TITL 2 DERIVATIVES EFFECTIVELY PREVENT OMICRON INFECTIONS IN MICE. JRNL REF CELL REP MED V. 4 00918 2023 JRNL REFN ESSN 2666-3791 JRNL PMID 36702124 JRNL DOI 10.1016/J.XCRM.2023.100918 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2000 - 5.5800 1.00 2728 159 0.2067 0.2211 REMARK 3 2 5.5800 - 4.4300 1.00 2639 129 0.1640 0.1652 REMARK 3 3 4.4300 - 3.8700 1.00 2598 162 0.1693 0.2116 REMARK 3 4 3.8700 - 3.5200 1.00 2595 140 0.1975 0.2173 REMARK 3 5 3.5200 - 3.2700 1.00 2597 139 0.2089 0.2574 REMARK 3 6 3.2700 - 3.0700 1.00 2559 141 0.2375 0.2872 REMARK 3 7 3.0700 - 2.9200 1.00 2598 141 0.2475 0.2627 REMARK 3 8 2.9200 - 2.7900 1.00 2551 146 0.2611 0.2797 REMARK 3 9 2.7900 - 2.6900 0.93 2366 122 0.2715 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.302 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.649 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5376 REMARK 3 ANGLE : 0.603 7333 REMARK 3 CHIRALITY : 0.046 784 REMARK 3 PLANARITY : 0.003 944 REMARK 3 DIHEDRAL : 17.175 1941 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.4748 -17.4290 -12.5301 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.2365 REMARK 3 T33: 0.1818 T12: -0.0037 REMARK 3 T13: -0.0186 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.7865 L22: 1.2233 REMARK 3 L33: 0.7590 L12: 0.0106 REMARK 3 L13: -0.0685 L23: -0.2865 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0332 S13: -0.0811 REMARK 3 S21: 0.0535 S22: -0.0183 S23: 0.0254 REMARK 3 S31: 0.0913 S32: -0.0617 S33: -0.0463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M TRIS (PH REMARK 280 8.5), 30% W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.13950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.44300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.13950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.44300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.36000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.13950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.44300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.36000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.13950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.44300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, H, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN D 1 REMARK 465 HIS D 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 50.92 -113.23 REMARK 500 ASN A 422 -63.00 -129.69 REMARK 500 LEU A 518 -87.35 -109.75 REMARK 500 ALA B 352 55.19 -112.74 REMARK 500 PHE B 377 86.46 -157.77 REMARK 500 ASN B 422 -57.10 -127.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 638 DISTANCE = 6.85 ANGSTROMS DBREF 7WD2 A 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 7WD2 B 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 7WD2 C 1 129 PDB 7WD2 7WD2 1 129 DBREF 7WD2 D 1 129 PDB 7WD2 7WD2 1 129 SEQRES 1 A 198 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 198 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 198 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 198 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 198 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 198 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 198 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 198 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 198 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 198 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 198 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 198 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 198 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 198 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 198 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 198 LYS LYS SER SEQRES 1 B 198 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 198 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 198 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 198 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 198 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 198 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 198 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 198 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 198 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 198 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 198 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 198 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 198 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 198 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 198 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 B 198 LYS LYS SER SEQRES 1 C 129 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 129 PRO GLY GLY SER LEU ARG LEU THR CYS ALA PRO SER GLY SEQRES 3 C 129 PHE THR LEU ASP TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 C 129 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 C 129 SER ASN ASN SER THR TYR TYR ALA ASP SER VAL LYS GLY SEQRES 6 C 129 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 C 129 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 C 129 VAL TYR TYR CYS ALA ALA GLU PRO ASP TYR SER GLY VAL SEQRES 9 C 129 TYR TYR TYR THR CYS GLY TRP THR ASP PHE GLY SER TRP SEQRES 10 C 129 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 1 D 129 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 129 PRO GLY GLY SER LEU ARG LEU THR CYS ALA PRO SER GLY SEQRES 3 D 129 PHE THR LEU ASP TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 D 129 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 D 129 SER ASN ASN SER THR TYR TYR ALA ASP SER VAL LYS GLY SEQRES 6 D 129 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 D 129 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 D 129 VAL TYR TYR CYS ALA ALA GLU PRO ASP TYR SER GLY VAL SEQRES 9 D 129 TYR TYR TYR THR CYS GLY TRP THR ASP PHE GLY SER TRP SEQRES 10 D 129 GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG H 1 14 HET NAG H 2 14 HET NAG E 1 14 HET FUC E 2 10 HET NAG C 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 9 HOH *89(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 SER A 383 ASP A 389 5 7 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 PRO B 337 ASN B 343 1 7 HELIX 10 AB1 SER B 349 TRP B 353 5 5 HELIX 11 AB2 TYR B 365 ASN B 370 1 6 HELIX 12 AB3 SER B 383 ASP B 389 5 7 HELIX 13 AB4 ASP B 405 ILE B 410 5 6 HELIX 14 AB5 GLY B 416 ASN B 422 1 7 HELIX 15 AB6 SER B 438 SER B 443 1 6 HELIX 16 AB7 GLY B 502 TYR B 505 5 4 HELIX 17 AB8 PRO B 527 SER B 530 5 4 HELIX 18 AB9 ASP C 61 LYS C 64 5 4 HELIX 19 AC1 LYS C 86 THR C 90 5 5 HELIX 20 AC2 GLY C 110 PHE C 114 5 5 HELIX 21 AC3 ASP D 61 LYS D 64 5 4 HELIX 22 AC4 LYS D 86 THR D 90 5 5 HELIX 23 AC5 GLY D 110 PHE D 114 5 5 SHEET 1 AA1 6 ASN A 354 ILE A 358 0 SHEET 2 AA1 6 ASN A 394 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA1 6 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 6 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 6 PHE A 374 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 6 AA1 6 VAL C 104 THR C 108 -1 O TYR C 105 N CYS A 379 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 6 ASN B 354 ILE B 358 0 SHEET 2 AA5 6 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA5 6 PRO B 507 GLU B 516 -1 O VAL B 512 N ASP B 398 SHEET 4 AA5 6 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA5 6 PHE B 374 TYR B 380 -1 N LYS B 378 O VAL B 433 SHEET 6 AA5 6 TYR D 105 THR D 108 -1 O TYR D 107 N PHE B 377 SHEET 1 AA6 3 CYS B 361 VAL B 362 0 SHEET 2 AA6 3 VAL B 524 CYS B 525 1 O CYS B 525 N CYS B 361 SHEET 3 AA6 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA7 2 LEU B 452 ARG B 454 0 SHEET 2 AA7 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA8 2 TYR B 473 GLN B 474 0 SHEET 2 AA8 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA9 4 GLN C 3 SER C 7 0 SHEET 2 AA9 4 LEU C 18 SER C 25 -1 O ALA C 23 N GLN C 5 SHEET 3 AA9 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 AA9 4 PHE C 67 ASP C 72 -1 N THR C 68 O GLN C 81 SHEET 1 AB1 6 GLY C 10 VAL C 12 0 SHEET 2 AB1 6 THR C 121 VAL C 125 1 O THR C 124 N GLY C 10 SHEET 3 AB1 6 ALA C 91 PRO C 99 -1 N TYR C 93 O THR C 121 SHEET 4 AB1 6 TYR C 32 GLN C 39 -1 N PHE C 37 O TYR C 94 SHEET 5 AB1 6 ARG C 45 ILE C 51 -1 O SER C 49 N TRP C 36 SHEET 6 AB1 6 THR C 57 TYR C 59 -1 O TYR C 58 N CYS C 50 SHEET 1 AB2 4 GLY C 10 VAL C 12 0 SHEET 2 AB2 4 THR C 121 VAL C 125 1 O THR C 124 N GLY C 10 SHEET 3 AB2 4 ALA C 91 PRO C 99 -1 N TYR C 93 O THR C 121 SHEET 4 AB2 4 SER C 116 TRP C 117 -1 O SER C 116 N ALA C 97 SHEET 1 AB3 4 GLN D 3 SER D 7 0 SHEET 2 AB3 4 LEU D 18 SER D 25 -1 O THR D 21 N SER D 7 SHEET 3 AB3 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 AB3 4 PHE D 67 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 AB4 6 LEU D 11 VAL D 12 0 SHEET 2 AB4 6 THR D 121 VAL D 125 1 O THR D 124 N VAL D 12 SHEET 3 AB4 6 ALA D 91 PRO D 99 -1 N TYR D 93 O THR D 121 SHEET 4 AB4 6 TYR D 32 GLN D 39 -1 N PHE D 37 O TYR D 94 SHEET 5 AB4 6 ARG D 45 ILE D 51 -1 O SER D 49 N TRP D 36 SHEET 6 AB4 6 THR D 57 TYR D 59 -1 O TYR D 58 N CYS D 50 SHEET 1 AB5 4 LEU D 11 VAL D 12 0 SHEET 2 AB5 4 THR D 121 VAL D 125 1 O THR D 124 N VAL D 12 SHEET 3 AB5 4 ALA D 91 PRO D 99 -1 N TYR D 93 O THR D 121 SHEET 4 AB5 4 SER D 116 TRP D 117 -1 O SER D 116 N ALA D 97 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.04 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 6 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 7 CYS B 391 CYS B 525 1555 1555 2.04 SSBOND 8 CYS B 480 CYS B 488 1555 1555 2.03 SSBOND 9 CYS C 22 CYS C 95 1555 1555 2.03 SSBOND 10 CYS C 50 CYS C 109 1555 1555 2.03 SSBOND 11 CYS D 22 CYS D 95 1555 1555 2.03 SSBOND 12 CYS D 50 CYS D 109 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 343 C1 NAG H 1 1555 1555 1.44 LINK ND2 ASN C 55 C1 NAG C 201 1555 1555 1.44 LINK ND2 ASN D 55 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 2 1555 1555 1.44 CISPEP 1 ALA A 520 PRO A 521 0 4.71 CRYST1 102.279 138.886 122.720 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008149 0.00000