HEADER OXIDOREDUCTASE 21-DEC-21 7WDH TITLE CRYSTAL STRUCTURE OF THE P450 BM3 HEME DOMAIN MUTANT F87A IN COMPLEX TITLE 2 WITH N-IMIDAZOLYL-HEXANOYL-L-PHENYLALANINE, PHENOL AND HYDROXYLAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL CYTOCHROME P450/NADPH--P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.14.1,1.6.2.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PRIESTIA MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: BTA37_15100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DUAL-FUNCTIONAL SMALL MOLECULE, P450 HEME DOMAIN, COMPLEX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIANG,S.DONG,Y.FENG,Z.CONG REVDAT 3 29-NOV-23 7WDH 1 REMARK REVDAT 2 19-JUL-23 7WDH 1 JRNL REVDAT 1 28-DEC-22 7WDH 0 JRNL AUTH X.WANG,X.LIN,Y.JIANG,X.QIN,N.MA,F.YAO,S.DONG,C.LIU,Y.FENG, JRNL AUTH 2 L.JIN,M.XIAN,Z.CONG JRNL TITL ENGINEERING CYTOCHROME P450BM3 ENZYMES FOR DIRECT NITRATION JRNL TITL 2 OF UNSATURATED HYDROCARBONS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 17678 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 36660956 JRNL DOI 10.1002/ANIE.202217678 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 120459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.640 REMARK 3 FREE R VALUE TEST SET COUNT : 3478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5700 - 4.9000 0.90 8910 151 0.1666 0.1701 REMARK 3 2 4.9000 - 3.8900 0.88 8638 141 0.1429 0.1867 REMARK 3 3 3.8900 - 3.4000 0.84 8301 138 0.1513 0.1644 REMARK 3 4 3.4000 - 3.0900 0.84 8273 141 0.1694 0.1748 REMARK 3 5 3.0900 - 2.8600 0.82 8150 136 0.1844 0.2063 REMARK 3 6 2.8600 - 2.7000 0.83 8131 137 0.1801 0.2060 REMARK 3 7 2.7000 - 2.5600 0.82 8026 137 0.1905 0.2052 REMARK 3 8 2.5600 - 2.4500 0.82 8045 135 0.1793 0.2060 REMARK 3 9 2.4500 - 2.3600 0.82 8070 135 0.1840 0.1957 REMARK 3 10 2.3500 - 2.2700 0.83 8112 144 0.1863 0.1946 REMARK 3 11 2.2700 - 2.2000 0.83 8187 138 0.1852 0.2021 REMARK 3 12 2.2000 - 2.1400 0.83 8218 142 0.1873 0.2122 REMARK 3 13 2.1400 - 2.0800 0.84 8304 139 0.1933 0.2266 REMARK 3 14 2.0800 - 2.0300 0.85 8265 139 0.1965 0.2585 REMARK 3 15 2.0300 - 1.9900 0.85 8491 132 0.2013 0.2325 REMARK 3 16 1.9900 - 1.9400 0.85 8397 135 0.2109 0.2653 REMARK 3 17 1.9400 - 1.9100 0.87 8478 140 0.2135 0.2307 REMARK 3 18 1.9100 - 1.8700 0.85 8459 135 0.2257 0.2494 REMARK 3 19 1.8700 - 1.8400 0.86 8440 140 0.2318 0.2375 REMARK 3 20 1.8400 - 1.8000 0.85 8388 144 0.2409 0.3077 REMARK 3 21 1.8000 - 1.7800 0.85 8333 139 0.2531 0.2940 REMARK 3 22 1.7800 - 1.7500 0.86 8509 137 0.2594 0.3039 REMARK 3 23 1.7500 - 1.7200 0.86 8352 139 0.2590 0.2388 REMARK 3 24 1.7200 - 1.7000 0.85 8437 136 0.2759 0.2767 REMARK 3 25 1.7000 - 1.6800 0.85 8345 148 0.2819 0.3028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 3 THROUGH 30 OR REMARK 3 (RESID 31 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 32 REMARK 3 THROUGH 166 OR (RESID 168 THROUGH 169 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 170 THROUGH 172 OR REMARK 3 (RESID 173 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 174 REMARK 3 THROUGH 178 OR (RESID 179 THROUGH 180 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 181 THROUGH 186 OR REMARK 3 (RESID 187 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 188 REMARK 3 THROUGH 193 OR (RESID 194 THROUGH 195 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 196 THROUGH 198 OR REMARK 3 (RESID 199 THROUGH 200 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 201 OR (RESID 202 THROUGH 207 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 208 OR (RESID REMARK 3 209 THROUGH 210 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 211 THROUGH 216 OR (RESID 217 THROUGH 218 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 219 THROUGH 224 REMARK 3 OR RESID 230 THROUGH 291 OR (RESID 292 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 293 THROUGH 295 REMARK 3 OR RESID 297 THROUGH 379 OR (RESID 380 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 382 THROUGH 429 REMARK 3 OR (RESID 430 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG )) REMARK 3 OR RESID 431 THROUGH 439 OR (RESID 440 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG )) OR RESID 441 REMARK 3 THROUGH 448 OR (RESID 449 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 450 THROUGH 455 OR REMARK 3 RESID 501 THROUGH 601 OR RESID 901 REMARK 3 THROUGH 1001)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 108 OR REMARK 3 (RESID 109 THROUGH 111 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 112 THROUGH 135 OR (RESID 136 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 137 THROUGH 166 REMARK 3 OR RESID 168 THROUGH 224 OR RESID 230 OR REMARK 3 (RESID 231 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 232 REMARK 3 THROUGH 240 OR (RESID 241 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG )) OR RESID 242 THROUGH 295 OR REMARK 3 RESID 297 THROUGH 351 OR (RESID 352 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 353 THROUGH 380 OR REMARK 3 RESID 382 THROUGH 451 OR (RESID 452 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 453 REMARK 3 THROUGH 455 OR RESID 501 THROUGH 601 OR REMARK 3 RESID 1001 THROUGH 1101)) REMARK 3 ATOM PAIRS NUMBER : 4235 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EGN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 0.38 M MGCL2, 12-18% REMARK 280 PEG3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 74.00250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 LYS A 224 REMARK 465 ALA A 225 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 GLU A 228 REMARK 465 GLN A 229 REMARK 465 LEU A 456 REMARK 465 GLU A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 GLY B -1 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ALA B 197 REMARK 465 TYR B 198 REMARK 465 ASP B 199 REMARK 465 GLU B 200 REMARK 465 LYS B 224 REMARK 465 ALA B 225 REMARK 465 SER B 226 REMARK 465 GLY B 227 REMARK 465 GLU B 228 REMARK 465 LEU B 456 REMARK 465 GLU B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 ASP A 168 CG OD1 OD2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 PRO A 172 CB CG CD REMARK 470 ILE A 174 CD1 REMARK 470 MET A 177 CG SD CE REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 196 CB CG CD REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LEU A 215 CB CG CD1 CD2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 LYS A 241 CD CE NZ REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 440 CD CE NZ REMARK 470 LYS A 452 CD CE NZ REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ASP B 23 CG OD1 OD2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 ASP B 136 CB CG OD1 OD2 REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 GLN B 169 CG CD OE1 NE2 REMARK 470 PRO B 172 CB CG CD REMARK 470 PHE B 173 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET B 177 CG SD CE REMARK 470 VAL B 178 CG1 CG2 REMARK 470 ARG B 179 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ALA B 191 CB REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 PRO B 196 CB CG CD REMARK 470 ASN B 201 CB CG OD1 ND2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 ARG B 203 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 PHE B 205 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 206 CG CD OE1 NE2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 ASP B 208 CG OD1 OD2 REMARK 470 ILE B 209 CG1 CG2 CD1 REMARK 470 LYS B 210 CB CG CD CE NZ REMARK 470 ASP B 214 CB CG OD1 OD2 REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 ILE B 220 CD1 REMARK 470 ALA B 221 CB REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 SER B 230 OG REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 GLU B 380 CG CD OE1 OE2 REMARK 470 GLU B 430 CD OE1 OE2 REMARK 470 LYS B 440 CD CE NZ REMARK 470 LYS B 449 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -127.70 57.57 REMARK 500 ASP A 84 36.90 -94.17 REMARK 500 ASP A 136 -1.89 68.35 REMARK 500 HIS A 266 -30.62 -138.20 REMARK 500 GLU A 344 -13.03 -142.38 REMARK 500 ASP A 370 39.64 -88.57 REMARK 500 THR A 436 -125.97 -99.58 REMARK 500 LYS B 15 -126.28 57.09 REMARK 500 ASP B 84 37.77 -94.63 REMARK 500 ASP B 136 -2.18 67.68 REMARK 500 ASP B 232 -166.92 -112.71 REMARK 500 HIS B 266 -30.05 -139.25 REMARK 500 ASP B 370 38.18 -87.58 REMARK 500 THR B 436 -124.28 -100.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 96.7 REMARK 620 3 HEM A 501 NB 87.1 90.3 REMARK 620 4 HEM A 501 NC 85.3 178.0 89.9 REMARK 620 5 HEM A 501 ND 93.9 89.1 178.9 90.6 REMARK 620 6 HOA A 502 N 177.2 85.8 94.3 92.2 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 95.5 REMARK 620 3 HEM B 501 NB 87.1 89.8 REMARK 620 4 HEM B 501 NC 85.6 178.8 90.4 REMARK 620 5 HEM B 501 ND 92.9 90.1 179.9 89.7 REMARK 620 6 HOA B 502 N 177.0 84.6 89.9 94.2 90.1 REMARK 620 N 1 2 3 4 5 DBREF1 7WDH A 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WDH A A0A1Q8UP87 1 456 DBREF1 7WDH B 0 455 UNP A0A1Q8UP87_BACME DBREF2 7WDH B A0A1Q8UP87 1 456 SEQADV 7WDH GLY A -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH ALA A 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQADV 7WDH LEU A 456 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH GLU A 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS A 463 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH GLY B -1 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH ALA B 87 UNP A0A1Q8UP8 PHE 88 ENGINEERED MUTATION SEQADV 7WDH LEU B 456 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH GLU B 457 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 458 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 459 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 460 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 461 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 462 UNP A0A1Q8UP8 EXPRESSION TAG SEQADV 7WDH HIS B 463 UNP A0A1Q8UP8 EXPRESSION TAG SEQRES 1 A 465 GLY MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE SEQRES 2 A 465 GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS SEQRES 3 A 465 PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY SEQRES 4 A 465 GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG SEQRES 5 A 465 TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP SEQRES 6 A 465 GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS SEQRES 7 A 465 PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER SEQRES 8 A 465 TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE SEQRES 9 A 465 LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR SEQRES 10 A 465 HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN SEQRES 11 A 465 LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL SEQRES 12 A 465 PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY SEQRES 13 A 465 LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG SEQRES 14 A 465 ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA SEQRES 15 A 465 LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO SEQRES 16 A 465 ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN SEQRES 17 A 465 GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE SEQRES 18 A 465 ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP SEQRES 19 A 465 LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR SEQRES 20 A 465 GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE SEQRES 21 A 465 ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY SEQRES 22 A 465 LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO SEQRES 23 A 465 HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL SEQRES 24 A 465 LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN SEQRES 25 A 465 LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG SEQRES 26 A 465 LEU TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS SEQRES 27 A 465 GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS SEQRES 28 A 465 GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG SEQRES 29 A 465 ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG SEQRES 30 A 465 PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS SEQRES 31 A 465 ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE SEQRES 32 A 465 GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU SEQRES 33 A 465 GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR SEQRES 34 A 465 ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS SEQRES 35 A 465 PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE SEQRES 36 A 465 PRO LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 465 GLY MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE SEQRES 2 B 465 GLY GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS SEQRES 3 B 465 PRO VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY SEQRES 4 B 465 GLU ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG SEQRES 5 B 465 TYR LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP SEQRES 6 B 465 GLU SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS SEQRES 7 B 465 PHE VAL ARG ASP PHE ALA GLY ASP GLY LEU ALA THR SER SEQRES 8 B 465 TRP THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE SEQRES 9 B 465 LEU LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR SEQRES 10 B 465 HIS ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN SEQRES 11 B 465 LYS TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL SEQRES 12 B 465 PRO GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY SEQRES 13 B 465 LEU CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG SEQRES 14 B 465 ASP GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA SEQRES 15 B 465 LEU ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO SEQRES 16 B 465 ASP ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN SEQRES 17 B 465 GLU ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE SEQRES 18 B 465 ILE ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP SEQRES 19 B 465 LEU LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR SEQRES 20 B 465 GLY GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE SEQRES 21 B 465 ILE THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY SEQRES 22 B 465 LEU LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO SEQRES 23 B 465 HIS VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL SEQRES 24 B 465 LEU VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN SEQRES 25 B 465 LEU LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG SEQRES 26 B 465 LEU TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS SEQRES 27 B 465 GLU ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS SEQRES 28 B 465 GLY ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG SEQRES 29 B 465 ASP LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG SEQRES 30 B 465 PRO GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS SEQRES 31 B 465 ALA PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE SEQRES 32 B 465 GLY GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU SEQRES 33 B 465 GLY MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR SEQRES 34 B 465 ASN TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS SEQRES 35 B 465 PRO GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE SEQRES 36 B 465 PRO LEU LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 501 43 HET HOA A 502 2 HET IC6 A 503 24 HET IC6 A 504 24 HET IPH A 505 7 HET IPH A 506 7 HET IPH A 507 7 HET IPH A 508 7 HET HEM B 501 43 HET HOA B 502 2 HET IC6 B 503 24 HET IC6 B 504 24 HET IPH B 505 7 HET IPH B 506 7 HET IPH B 507 7 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM HOA HYDROXYAMINE HETNAM IC6 (2S)-2-(6-IMIDAZOL-1-YLHEXANOYLAMINO)-3-PHENYL- HETNAM 2 IC6 PROPANOIC ACID HETNAM IPH PHENOL HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 HOA 2(H3 N O) FORMUL 5 IC6 4(C18 H23 N3 O3) FORMUL 7 IPH 7(C6 H6 O) FORMUL 18 HOH *751(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLU A 93 LEU A 104 1 12 HELIX 7 AA7 PRO A 105 PHE A 107 5 3 HELIX 8 AA8 SER A 108 ARG A 132 1 25 HELIX 9 AA9 VAL A 141 ASN A 159 1 19 HELIX 10 AB1 ASN A 163 ARG A 167 5 5 HELIX 11 AB2 HIS A 171 GLN A 189 1 19 HELIX 12 AB3 ASP A 195 ALA A 197 5 3 HELIX 13 AB4 TYR A 198 ARG A 223 1 26 HELIX 14 AB5 ASP A 232 GLY A 240 1 9 HELIX 15 AB6 ASP A 250 GLY A 265 1 16 HELIX 16 AB7 HIS A 266 ASN A 283 1 18 HELIX 17 AB8 ASN A 283 LEU A 298 1 16 HELIX 18 AB9 SER A 304 GLN A 310 1 7 HELIX 19 AC1 LEU A 311 TRP A 325 1 15 HELIX 20 AC2 ILE A 357 HIS A 361 1 5 HELIX 21 AC3 ASP A 363 GLY A 368 1 6 HELIX 22 AC4 ARG A 375 GLU A 380 5 6 HELIX 23 AC5 ASN A 381 ILE A 385 5 5 HELIX 24 AC6 ASN A 395 ALA A 399 5 5 HELIX 25 AC7 GLY A 402 HIS A 420 1 19 HELIX 26 AC8 PHE B 11 LYS B 15 5 5 HELIX 27 AC9 ASN B 16 ASN B 21 5 6 HELIX 28 AD1 LYS B 24 GLY B 37 1 14 HELIX 29 AD2 SER B 54 CYS B 62 1 9 HELIX 30 AD3 SER B 72 GLY B 83 1 12 HELIX 31 AD4 GLU B 93 LEU B 104 1 12 HELIX 32 AD5 PRO B 105 PHE B 107 5 3 HELIX 33 AD6 SER B 108 ARG B 132 1 25 HELIX 34 AD7 VAL B 141 ASN B 159 1 19 HELIX 35 AD8 ASN B 163 ARG B 167 5 5 HELIX 36 AD9 HIS B 171 GLN B 189 1 19 HELIX 37 AE1 LYS B 202 ARG B 223 1 22 HELIX 38 AE2 ASP B 232 GLY B 240 1 9 HELIX 39 AE3 ASP B 250 GLY B 265 1 16 HELIX 40 AE4 HIS B 266 ASN B 283 1 18 HELIX 41 AE5 ASN B 283 LEU B 298 1 16 HELIX 42 AE6 SER B 304 GLN B 310 1 7 HELIX 43 AE7 LEU B 311 TRP B 325 1 15 HELIX 44 AE8 ILE B 357 HIS B 361 1 5 HELIX 45 AE9 ASP B 363 GLY B 368 1 6 HELIX 46 AF1 ARG B 375 GLU B 380 5 6 HELIX 47 AF2 ASN B 381 ILE B 385 5 5 HELIX 48 AF3 ASN B 395 ALA B 399 5 5 HELIX 49 AF4 GLY B 402 HIS B 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 AA1 5 PHE A 67 ASN A 70 -1 N ASN A 70 O SER A 332 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE B 39 ALA B 44 0 SHEET 2 AA5 5 ARG B 47 LEU B 52 -1 O THR B 49 N PHE B 42 SHEET 3 AA5 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 AA5 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 AA5 5 PHE B 67 ASN B 70 -1 N ASN B 70 O SER B 332 SHEET 1 AA6 3 ILE B 139 GLU B 140 0 SHEET 2 AA6 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 AA6 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 AA7 2 THR B 339 LEU B 341 0 SHEET 2 AA7 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 AA8 2 ILE B 433 GLU B 435 0 SHEET 2 AA8 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.44 LINK FE HEM A 501 N HOA A 502 1555 1555 2.45 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.49 LINK FE HEM B 501 N HOA B 502 1555 1555 2.43 CRYST1 58.893 148.005 65.467 90.00 100.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016980 0.000000 0.003068 0.00000 SCALE2 0.000000 0.006757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015522 0.00000