data_7WED # _entry.id 7WED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WED pdb_00007wed 10.2210/pdb7wed/pdb WWPDB D_1300026542 ? ? EMDB EMD-32447 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347' _pdbx_database_related.db_id EMD-32447 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WED _pdbx_database_status.recvd_initial_deposition_date 2021-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, X.' 1 0000-0003-0635-278X 'Wang, L.' 2 0000-0002-8519-0637 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 603 _citation.language ? _citation.page_first 919 _citation.page_last 925 _citation.title 'Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-022-04466-x _citation.pdbx_database_id_PubMed 35090164 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, K.' 1 ? primary 'Jia, Z.' 2 ? primary 'Bao, L.' 3 ? primary 'Wang, L.' 4 ? primary 'Cao, L.' 5 ? primary 'Chi, H.' 6 ? primary 'Hu, Y.' 7 ? primary 'Li, Q.' 8 ? primary 'Zhou, Y.' 9 ? primary 'Jiang, Y.' 10 ? primary 'Zhu, Q.' 11 ? primary 'Deng, Y.' 12 0000-0002-2306-1039 primary 'Liu, P.' 13 ? primary 'Wang, N.' 14 ? primary 'Wang, L.' 15 0000-0002-2571-4320 primary 'Liu, M.' 16 ? primary 'Li, Y.' 17 ? primary 'Zhu, B.' 18 ? primary 'Fan, K.' 19 ? primary 'Fu, W.' 20 ? primary 'Yang, P.' 21 ? primary 'Pei, X.' 22 ? primary 'Cui, Z.' 23 ? primary 'Qin, L.' 24 0000-0002-0700-0180 primary 'Ge, P.' 25 ? primary 'Wu, J.' 26 ? primary 'Liu, S.' 27 ? primary 'Chen, Y.' 28 ? primary 'Huang, W.' 29 0000-0002-4246-8889 primary 'Wang, Q.' 30 ? primary 'Qin, C.F.' 31 0000-0002-0632-2807 primary 'Wang, Y.' 32 0000-0001-9769-5141 primary 'Qin, C.' 33 0000-0002-6261-1232 primary 'Wang, X.' 34 0000-0003-0635-278X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WED _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WED _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22806.828 1 ? ? ? ? 2 polymer man 'The heavy chain of Fab XGv347' 13522.059 1 ? ? ? ? 3 polymer man 'The light chain of Fab XGv347' 11620.874 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Omicron variant Spike protein, S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; ;PNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCY FPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; E ? 2 'polypeptide(L)' no no ;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTDVSSLQWVRQARGQRLEWIGWTVVGTGNTNYAPRFQERVTITTDKSTSTA YMELSSLRSEDTAVYYCAAPFCSETSCSDGFDLWGQGTKVTVS ; ;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTDVSSLQWVRQARGQRLEWIGWTVVGTGNTNYAPRFQERVTITTDKSTSTA YMELSSLRSEDTAVYYCAAPFCSETSCSDGFDLWGQGTKVTVS ; H ? 3 'polypeptide(L)' no no ;EIVLTQSPGTLSLSPGDRATLSCRASQSVRISYLAWYQQKPGQAPRLLISGSSSRATGIPDRFSASGSGTDFTLTISRLE PEDFAVYYCQQYANSPWTFGQGTKVEV ; ;EIVLTQSPGTLSLSPGDRATLSCRASQSVRISYLAWYQQKPGQAPRLLISGSSSRATGIPDRFSASGSGTDFTLTISRLE PEDFAVYYCQQYANSPWTFGQGTKVEV ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ASN n 1 3 ILE n 1 4 THR n 1 5 ASN n 1 6 LEU n 1 7 CYS n 1 8 PRO n 1 9 PHE n 1 10 ASP n 1 11 GLU n 1 12 VAL n 1 13 PHE n 1 14 ASN n 1 15 ALA n 1 16 THR n 1 17 ARG n 1 18 PHE n 1 19 ALA n 1 20 SER n 1 21 VAL n 1 22 TYR n 1 23 ALA n 1 24 TRP n 1 25 ASN n 1 26 ARG n 1 27 LYS n 1 28 ARG n 1 29 ILE n 1 30 SER n 1 31 ASN n 1 32 CYS n 1 33 VAL n 1 34 ALA n 1 35 ASP n 1 36 TYR n 1 37 SER n 1 38 VAL n 1 39 LEU n 1 40 TYR n 1 41 ASN n 1 42 LEU n 1 43 ALA n 1 44 PRO n 1 45 PHE n 1 46 PHE n 1 47 THR n 1 48 PHE n 1 49 LYS n 1 50 CYS n 1 51 TYR n 1 52 GLY n 1 53 VAL n 1 54 SER n 1 55 PRO n 1 56 THR n 1 57 LYS n 1 58 LEU n 1 59 ASN n 1 60 ASP n 1 61 LEU n 1 62 CYS n 1 63 PHE n 1 64 THR n 1 65 ASN n 1 66 VAL n 1 67 TYR n 1 68 ALA n 1 69 ASP n 1 70 SER n 1 71 PHE n 1 72 VAL n 1 73 ILE n 1 74 ARG n 1 75 GLY n 1 76 ASP n 1 77 GLU n 1 78 VAL n 1 79 ARG n 1 80 GLN n 1 81 ILE n 1 82 ALA n 1 83 PRO n 1 84 GLY n 1 85 GLN n 1 86 THR n 1 87 GLY n 1 88 LYS n 1 89 ILE n 1 90 ALA n 1 91 ASP n 1 92 TYR n 1 93 ASN n 1 94 TYR n 1 95 LYS n 1 96 LEU n 1 97 PRO n 1 98 ASP n 1 99 ASP n 1 100 PHE n 1 101 THR n 1 102 GLY n 1 103 CYS n 1 104 VAL n 1 105 ILE n 1 106 ALA n 1 107 TRP n 1 108 ASN n 1 109 SER n 1 110 ASN n 1 111 ASN n 1 112 LEU n 1 113 ASP n 1 114 SER n 1 115 LYS n 1 116 VAL n 1 117 GLY n 1 118 GLY n 1 119 ASN n 1 120 TYR n 1 121 ASN n 1 122 TYR n 1 123 LEU n 1 124 TYR n 1 125 ARG n 1 126 LEU n 1 127 PHE n 1 128 ARG n 1 129 LYS n 1 130 SER n 1 131 ASN n 1 132 LEU n 1 133 LYS n 1 134 PRO n 1 135 PHE n 1 136 GLU n 1 137 ARG n 1 138 ASP n 1 139 ILE n 1 140 SER n 1 141 THR n 1 142 GLU n 1 143 ILE n 1 144 TYR n 1 145 GLN n 1 146 ALA n 1 147 GLY n 1 148 ASN n 1 149 LYS n 1 150 PRO n 1 151 CYS n 1 152 ASN n 1 153 GLY n 1 154 VAL n 1 155 ALA n 1 156 GLY n 1 157 PHE n 1 158 ASN n 1 159 CYS n 1 160 TYR n 1 161 PHE n 1 162 PRO n 1 163 LEU n 1 164 ARG n 1 165 SER n 1 166 TYR n 1 167 SER n 1 168 PHE n 1 169 ARG n 1 170 PRO n 1 171 THR n 1 172 TYR n 1 173 GLY n 1 174 VAL n 1 175 GLY n 1 176 HIS n 1 177 GLN n 1 178 PRO n 1 179 TYR n 1 180 ARG n 1 181 VAL n 1 182 VAL n 1 183 VAL n 1 184 LEU n 1 185 SER n 1 186 PHE n 1 187 GLU n 1 188 LEU n 1 189 LEU n 1 190 HIS n 1 191 ALA n 1 192 PRO n 1 193 ALA n 1 194 THR n 1 195 VAL n 1 196 CYS n 1 197 GLY n 1 198 PRO n 1 199 LYS n 1 200 LYS n 1 201 SER n 2 1 GLN n 2 2 MET n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLU n 2 11 VAL n 2 12 LYS n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 THR n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 VAL n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 THR n 2 31 ASP n 2 32 VAL n 2 33 SER n 2 34 SER n 2 35 LEU n 2 36 GLN n 2 37 TRP n 2 38 VAL n 2 39 ARG n 2 40 GLN n 2 41 ALA n 2 42 ARG n 2 43 GLY n 2 44 GLN n 2 45 ARG n 2 46 LEU n 2 47 GLU n 2 48 TRP n 2 49 ILE n 2 50 GLY n 2 51 TRP n 2 52 THR n 2 53 VAL n 2 54 VAL n 2 55 GLY n 2 56 THR n 2 57 GLY n 2 58 ASN n 2 59 THR n 2 60 ASN n 2 61 TYR n 2 62 ALA n 2 63 PRO n 2 64 ARG n 2 65 PHE n 2 66 GLN n 2 67 GLU n 2 68 ARG n 2 69 VAL n 2 70 THR n 2 71 ILE n 2 72 THR n 2 73 THR n 2 74 ASP n 2 75 LYS n 2 76 SER n 2 77 THR n 2 78 SER n 2 79 THR n 2 80 ALA n 2 81 TYR n 2 82 MET n 2 83 GLU n 2 84 LEU n 2 85 SER n 2 86 SER n 2 87 LEU n 2 88 ARG n 2 89 SER n 2 90 GLU n 2 91 ASP n 2 92 THR n 2 93 ALA n 2 94 VAL n 2 95 TYR n 2 96 TYR n 2 97 CYS n 2 98 ALA n 2 99 ALA n 2 100 PRO n 2 101 PHE n 2 102 CYS n 2 103 SER n 2 104 GLU n 2 105 THR n 2 106 SER n 2 107 CYS n 2 108 SER n 2 109 ASP n 2 110 GLY n 2 111 PHE n 2 112 ASP n 2 113 LEU n 2 114 TRP n 2 115 GLY n 2 116 GLN n 2 117 GLY n 2 118 THR n 2 119 LYS n 2 120 VAL n 2 121 THR n 2 122 VAL n 2 123 SER n 3 1 GLU n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 GLY n 3 10 THR n 3 11 LEU n 3 12 SER n 3 13 LEU n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 ASP n 3 18 ARG n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 ARG n 3 31 ILE n 3 32 SER n 3 33 TYR n 3 34 LEU n 3 35 ALA n 3 36 TRP n 3 37 TYR n 3 38 GLN n 3 39 GLN n 3 40 LYS n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 ALA n 3 45 PRO n 3 46 ARG n 3 47 LEU n 3 48 LEU n 3 49 ILE n 3 50 SER n 3 51 GLY n 3 52 SER n 3 53 SER n 3 54 SER n 3 55 ARG n 3 56 ALA n 3 57 THR n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ASP n 3 62 ARG n 3 63 PHE n 3 64 SER n 3 65 ALA n 3 66 SER n 3 67 GLY n 3 68 SER n 3 69 GLY n 3 70 THR n 3 71 ASP n 3 72 PHE n 3 73 THR n 3 74 LEU n 3 75 THR n 3 76 ILE n 3 77 SER n 3 78 ARG n 3 79 LEU n 3 80 GLU n 3 81 PRO n 3 82 GLU n 3 83 ASP n 3 84 PHE n 3 85 ALA n 3 86 VAL n 3 87 TYR n 3 88 TYR n 3 89 CYS n 3 90 GLN n 3 91 GLN n 3 92 TYR n 3 93 ALA n 3 94 ASN n 3 95 SER n 3 96 PRO n 3 97 TRP n 3 98 THR n 3 99 PHE n 3 100 GLY n 3 101 GLN n 3 102 GLY n 3 103 THR n 3 104 LYS n 3 105 VAL n 3 106 GLU n 3 107 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 201 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 123 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 330 2 PDB 7WED 7WED ? 2 ? 1 3 PDB 7WED 7WED ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WED E 1 ? 201 ? P0DTC2 330 ? 530 ? 330 530 2 2 7WED H 1 ? 123 ? 7WED 1 ? 123 ? 1 123 3 3 7WED L 1 ? 107 ? 7WED 1 ? 107 ? 1 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7WED ASP E 10 ? UNP P0DTC2 GLY 339 variant 339 1 1 7WED LEU E 42 ? UNP P0DTC2 SER 371 variant 371 2 1 7WED PRO E 44 ? UNP P0DTC2 SER 373 variant 373 3 1 7WED PHE E 46 ? UNP P0DTC2 SER 375 variant 375 4 1 7WED ASN E 148 ? UNP P0DTC2 SER 477 variant 477 5 1 7WED LYS E 149 ? UNP P0DTC2 THR 478 variant 478 6 1 7WED ALA E 155 ? UNP P0DTC2 GLU 484 variant 484 7 1 7WED ARG E 164 ? UNP P0DTC2 GLN 493 variant 493 8 1 7WED SER E 167 ? UNP P0DTC2 GLY 496 variant 496 9 1 7WED ARG E 169 ? UNP P0DTC2 GLN 498 variant 498 10 1 7WED TYR E 172 ? UNP P0DTC2 ASN 501 variant 501 11 1 7WED HIS E 176 ? UNP P0DTC2 TYR 505 variant 505 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WED _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7WED _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3445 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.670 ? 4686 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.352 ? 475 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 509 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 605 ? f_plane_restr ? ? # _struct.entry_id 7WED _struct.title 'SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WED _struct_keywords.text 'SARS-CoV-2, Omicron, Spike-Fab complex, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 8 ? ASN A 14 ? PRO E 337 ASN E 343 1 ? 7 HELX_P HELX_P2 AA2 TYR A 36 ? ASN A 41 ? TYR E 365 ASN E 370 1 ? 6 HELX_P HELX_P3 AA3 THR A 56 ? LEU A 61 ? THR E 385 LEU E 390 5 ? 6 HELX_P HELX_P4 AA4 ASP A 76 ? ALA A 82 ? ASP E 405 ALA E 411 5 ? 7 HELX_P HELX_P5 AA5 GLY A 87 ? TYR A 92 ? GLY E 416 TYR E 421 1 ? 6 HELX_P HELX_P6 AA6 PRO B 63 ? GLN B 66 ? PRO H 63 GLN H 66 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 32 SG ? ? E CYS 336 E CYS 361 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 103 SG ? ? E CYS 379 E CYS 432 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 196 SG ? ? E CYS 391 E CYS 525 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 151 SG ? ? ? 1_555 A CYS 159 SG ? ? E CYS 480 E CYS 488 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 97 SG ? ? H CYS 22 H CYS 97 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf6 disulf ? ? B CYS 102 SG ? ? ? 1_555 B CYS 107 SG ? ? H CYS 102 H CYS 107 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf7 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? L CYS 23 L CYS 89 1_555 ? ? ? ? ? ? ? 2.039 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 2 A . ? ASN 331 E ILE 3 A ? ILE 332 E 1 -10.60 2 SER 7 C . ? SER 7 L PRO 8 C ? PRO 8 L 1 -11.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 25 ? ILE A 29 ? ASN E 354 ILE E 358 AA1 2 PHE A 63 ? ARG A 74 ? PHE E 392 ARG E 403 AA1 3 PRO A 178 ? LEU A 188 ? PRO E 507 LEU E 517 AA1 4 GLY A 102 ? ASN A 108 ? GLY E 431 ASN E 437 AA1 5 THR A 47 ? CYS A 50 ? THR E 376 CYS E 379 AA2 1 LEU A 123 ? ARG A 125 ? LEU E 452 ARG E 454 AA2 2 LEU A 163 ? SER A 165 ? LEU E 492 SER E 494 AA3 1 TYR A 144 ? GLN A 145 ? TYR E 473 GLN E 474 AA3 2 CYS A 159 ? TYR A 160 ? CYS E 488 TYR E 489 AA4 1 GLN B 3 ? GLN B 6 ? GLN H 3 GLN H 6 AA4 2 VAL B 18 ? SER B 25 ? VAL H 18 SER H 25 AA4 3 THR B 79 ? LEU B 84 ? THR H 79 LEU H 84 AA4 4 VAL B 69 ? ASP B 74 ? VAL H 69 ASP H 74 AA5 1 GLU B 10 ? LYS B 12 ? GLU H 10 LYS H 12 AA5 2 THR B 118 ? VAL B 122 ? THR H 118 VAL H 122 AA5 3 ALA B 93 ? ALA B 99 ? ALA H 93 ALA H 99 AA5 4 SER B 34 ? GLN B 40 ? SER H 34 GLN H 40 AA5 5 LEU B 46 ? VAL B 53 ? LEU H 46 VAL H 53 AA5 6 THR B 59 ? TYR B 61 ? THR H 59 TYR H 61 AA6 1 GLU B 10 ? LYS B 12 ? GLU H 10 LYS H 12 AA6 2 THR B 118 ? VAL B 122 ? THR H 118 VAL H 122 AA6 3 ALA B 93 ? ALA B 99 ? ALA H 93 ALA H 99 AA6 4 LEU B 113 ? TRP B 114 ? LEU H 113 TRP H 114 AA7 1 THR C 5 ? SER C 7 ? THR L 5 SER L 7 AA7 2 ALA C 19 ? ARG C 24 ? ALA L 19 ARG L 24 AA7 3 ASP C 71 ? ILE C 76 ? ASP L 71 ILE L 76 AA7 4 PHE C 63 ? SER C 66 ? PHE L 63 SER L 66 AA8 1 THR C 10 ? SER C 12 ? THR L 10 SER L 12 AA8 2 THR C 103 ? GLU C 106 ? THR L 103 GLU L 106 AA8 3 VAL C 86 ? GLN C 91 ? VAL L 86 GLN L 91 AA8 4 LEU C 34 ? GLN C 39 ? LEU L 34 GLN L 39 AA8 5 ARG C 46 ? SER C 50 ? ARG L 46 SER L 50 AA8 6 SER C 54 ? ARG C 55 ? SER L 54 ARG L 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 27 ? N LYS E 356 O ALA A 68 ? O ALA E 397 AA1 2 3 N PHE A 71 ? N PHE E 400 O VAL A 181 ? O VAL E 510 AA1 3 4 O VAL A 182 ? O VAL E 511 N ILE A 105 ? N ILE E 434 AA1 4 5 O ALA A 106 ? O ALA E 435 N THR A 47 ? N THR E 376 AA2 1 2 N TYR A 124 ? N TYR E 453 O ARG A 164 ? O ARG E 493 AA3 1 2 N TYR A 144 ? N TYR E 473 O TYR A 160 ? O TYR E 489 AA4 1 2 N VAL B 5 ? N VAL H 5 O LYS B 23 ? O LYS H 23 AA4 2 3 N VAL B 20 ? N VAL H 20 O MET B 82 ? O MET H 82 AA4 3 4 O TYR B 81 ? O TYR H 81 N THR B 72 ? N THR H 72 AA5 1 2 N GLU B 10 ? N GLU H 10 O LYS B 119 ? O LYS H 119 AA5 2 3 O VAL B 120 ? O VAL H 120 N ALA B 93 ? N ALA H 93 AA5 3 4 O TYR B 96 ? O TYR H 96 N VAL B 38 ? N VAL H 38 AA5 4 5 N ARG B 39 ? N ARG H 39 O GLU B 47 ? O GLU H 47 AA5 5 6 N TRP B 51 ? N TRP H 51 O ASN B 60 ? O ASN H 60 AA6 1 2 N GLU B 10 ? N GLU H 10 O LYS B 119 ? O LYS H 119 AA6 2 3 O VAL B 120 ? O VAL H 120 N ALA B 93 ? N ALA H 93 AA6 3 4 N ALA B 99 ? N ALA H 99 O LEU B 113 ? O LEU H 113 AA7 1 2 N SER C 7 ? N SER L 7 O SER C 22 ? O SER L 22 AA7 2 3 N ALA C 19 ? N ALA L 19 O ILE C 76 ? O ILE L 76 AA7 3 4 O THR C 75 ? O THR L 75 N SER C 64 ? N SER L 64 AA8 1 2 N LEU C 11 ? N LEU L 11 O GLU C 106 ? O GLU L 106 AA8 2 3 O THR C 103 ? O THR L 103 N TYR C 87 ? N TYR L 87 AA8 3 4 O TYR C 88 ? O TYR L 88 N TYR C 37 ? N TYR L 37 AA8 4 5 N TRP C 36 ? N TRP L 36 O ILE C 49 ? O ILE L 49 AA8 5 6 N SER C 50 ? N SER L 50 O SER C 54 ? O SER L 54 # _atom_sites.entry_id 7WED _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 330 330 PRO PRO E . n A 1 2 ASN 2 331 331 ASN ASN E . n A 1 3 ILE 3 332 332 ILE ILE E . n A 1 4 THR 4 333 333 THR THR E . n A 1 5 ASN 5 334 334 ASN ASN E . n A 1 6 LEU 6 335 335 LEU LEU E . n A 1 7 CYS 7 336 336 CYS CYS E . n A 1 8 PRO 8 337 337 PRO PRO E . n A 1 9 PHE 9 338 338 PHE PHE E . n A 1 10 ASP 10 339 339 ASP ASP E . n A 1 11 GLU 11 340 340 GLU GLU E . n A 1 12 VAL 12 341 341 VAL VAL E . n A 1 13 PHE 13 342 342 PHE PHE E . n A 1 14 ASN 14 343 343 ASN ASN E . n A 1 15 ALA 15 344 344 ALA ALA E . n A 1 16 THR 16 345 345 THR THR E . n A 1 17 ARG 17 346 346 ARG ARG E . n A 1 18 PHE 18 347 347 PHE PHE E . n A 1 19 ALA 19 348 348 ALA ALA E . n A 1 20 SER 20 349 349 SER SER E . n A 1 21 VAL 21 350 350 VAL VAL E . n A 1 22 TYR 22 351 351 TYR TYR E . n A 1 23 ALA 23 352 352 ALA ALA E . n A 1 24 TRP 24 353 353 TRP TRP E . n A 1 25 ASN 25 354 354 ASN ASN E . n A 1 26 ARG 26 355 355 ARG ARG E . n A 1 27 LYS 27 356 356 LYS LYS E . n A 1 28 ARG 28 357 357 ARG ARG E . n A 1 29 ILE 29 358 358 ILE ILE E . n A 1 30 SER 30 359 359 SER SER E . n A 1 31 ASN 31 360 360 ASN ASN E . n A 1 32 CYS 32 361 361 CYS CYS E . n A 1 33 VAL 33 362 362 VAL VAL E . n A 1 34 ALA 34 363 363 ALA ALA E . n A 1 35 ASP 35 364 364 ASP ASP E . n A 1 36 TYR 36 365 365 TYR TYR E . n A 1 37 SER 37 366 366 SER SER E . n A 1 38 VAL 38 367 367 VAL VAL E . n A 1 39 LEU 39 368 368 LEU LEU E . n A 1 40 TYR 40 369 369 TYR TYR E . n A 1 41 ASN 41 370 370 ASN ASN E . n A 1 42 LEU 42 371 371 LEU LEU E . n A 1 43 ALA 43 372 372 ALA ALA E . n A 1 44 PRO 44 373 373 PRO PRO E . n A 1 45 PHE 45 374 374 PHE PHE E . n A 1 46 PHE 46 375 375 PHE PHE E . n A 1 47 THR 47 376 376 THR THR E . n A 1 48 PHE 48 377 377 PHE PHE E . n A 1 49 LYS 49 378 378 LYS LYS E . n A 1 50 CYS 50 379 379 CYS CYS E . n A 1 51 TYR 51 380 380 TYR TYR E . n A 1 52 GLY 52 381 381 GLY GLY E . n A 1 53 VAL 53 382 382 VAL VAL E . n A 1 54 SER 54 383 383 SER SER E . n A 1 55 PRO 55 384 384 PRO PRO E . n A 1 56 THR 56 385 385 THR THR E . n A 1 57 LYS 57 386 386 LYS LYS E . n A 1 58 LEU 58 387 387 LEU LEU E . n A 1 59 ASN 59 388 388 ASN ASN E . n A 1 60 ASP 60 389 389 ASP ASP E . n A 1 61 LEU 61 390 390 LEU LEU E . n A 1 62 CYS 62 391 391 CYS CYS E . n A 1 63 PHE 63 392 392 PHE PHE E . n A 1 64 THR 64 393 393 THR THR E . n A 1 65 ASN 65 394 394 ASN ASN E . n A 1 66 VAL 66 395 395 VAL VAL E . n A 1 67 TYR 67 396 396 TYR TYR E . n A 1 68 ALA 68 397 397 ALA ALA E . n A 1 69 ASP 69 398 398 ASP ASP E . n A 1 70 SER 70 399 399 SER SER E . n A 1 71 PHE 71 400 400 PHE PHE E . n A 1 72 VAL 72 401 401 VAL VAL E . n A 1 73 ILE 73 402 402 ILE ILE E . n A 1 74 ARG 74 403 403 ARG ARG E . n A 1 75 GLY 75 404 404 GLY GLY E . n A 1 76 ASP 76 405 405 ASP ASP E . n A 1 77 GLU 77 406 406 GLU GLU E . n A 1 78 VAL 78 407 407 VAL VAL E . n A 1 79 ARG 79 408 408 ARG ARG E . n A 1 80 GLN 80 409 409 GLN GLN E . n A 1 81 ILE 81 410 410 ILE ILE E . n A 1 82 ALA 82 411 411 ALA ALA E . n A 1 83 PRO 83 412 412 PRO PRO E . n A 1 84 GLY 84 413 413 GLY GLY E . n A 1 85 GLN 85 414 414 GLN GLN E . n A 1 86 THR 86 415 415 THR THR E . n A 1 87 GLY 87 416 416 GLY GLY E . n A 1 88 LYS 88 417 417 LYS LYS E . n A 1 89 ILE 89 418 418 ILE ILE E . n A 1 90 ALA 90 419 419 ALA ALA E . n A 1 91 ASP 91 420 420 ASP ASP E . n A 1 92 TYR 92 421 421 TYR TYR E . n A 1 93 ASN 93 422 422 ASN ASN E . n A 1 94 TYR 94 423 423 TYR TYR E . n A 1 95 LYS 95 424 424 LYS LYS E . n A 1 96 LEU 96 425 425 LEU LEU E . n A 1 97 PRO 97 426 426 PRO PRO E . n A 1 98 ASP 98 427 427 ASP ASP E . n A 1 99 ASP 99 428 428 ASP ASP E . n A 1 100 PHE 100 429 429 PHE PHE E . n A 1 101 THR 101 430 430 THR THR E . n A 1 102 GLY 102 431 431 GLY GLY E . n A 1 103 CYS 103 432 432 CYS CYS E . n A 1 104 VAL 104 433 433 VAL VAL E . n A 1 105 ILE 105 434 434 ILE ILE E . n A 1 106 ALA 106 435 435 ALA ALA E . n A 1 107 TRP 107 436 436 TRP TRP E . n A 1 108 ASN 108 437 437 ASN ASN E . n A 1 109 SER 109 438 438 SER SER E . n A 1 110 ASN 110 439 439 ASN ASN E . n A 1 111 ASN 111 440 440 ASN ASN E . n A 1 112 LEU 112 441 441 LEU LEU E . n A 1 113 ASP 113 442 442 ASP ASP E . n A 1 114 SER 114 443 443 SER SER E . n A 1 115 LYS 115 444 444 LYS LYS E . n A 1 116 VAL 116 445 445 VAL VAL E . n A 1 117 GLY 117 446 446 GLY GLY E . n A 1 118 GLY 118 447 447 GLY GLY E . n A 1 119 ASN 119 448 448 ASN ASN E . n A 1 120 TYR 120 449 449 TYR TYR E . n A 1 121 ASN 121 450 450 ASN ASN E . n A 1 122 TYR 122 451 451 TYR TYR E . n A 1 123 LEU 123 452 452 LEU LEU E . n A 1 124 TYR 124 453 453 TYR TYR E . n A 1 125 ARG 125 454 454 ARG ARG E . n A 1 126 LEU 126 455 455 LEU LEU E . n A 1 127 PHE 127 456 456 PHE PHE E . n A 1 128 ARG 128 457 457 ARG ARG E . n A 1 129 LYS 129 458 458 LYS LYS E . n A 1 130 SER 130 459 459 SER SER E . n A 1 131 ASN 131 460 460 ASN ASN E . n A 1 132 LEU 132 461 461 LEU LEU E . n A 1 133 LYS 133 462 462 LYS LYS E . n A 1 134 PRO 134 463 463 PRO PRO E . n A 1 135 PHE 135 464 464 PHE PHE E . n A 1 136 GLU 136 465 465 GLU GLU E . n A 1 137 ARG 137 466 466 ARG ARG E . n A 1 138 ASP 138 467 467 ASP ASP E . n A 1 139 ILE 139 468 468 ILE ILE E . n A 1 140 SER 140 469 469 SER SER E . n A 1 141 THR 141 470 470 THR THR E . n A 1 142 GLU 142 471 471 GLU GLU E . n A 1 143 ILE 143 472 472 ILE ILE E . n A 1 144 TYR 144 473 473 TYR TYR E . n A 1 145 GLN 145 474 474 GLN GLN E . n A 1 146 ALA 146 475 475 ALA ALA E . n A 1 147 GLY 147 476 476 GLY GLY E . n A 1 148 ASN 148 477 477 ASN ASN E . n A 1 149 LYS 149 478 478 LYS LYS E . n A 1 150 PRO 150 479 479 PRO PRO E . n A 1 151 CYS 151 480 480 CYS CYS E . n A 1 152 ASN 152 481 481 ASN ASN E . n A 1 153 GLY 153 482 482 GLY GLY E . n A 1 154 VAL 154 483 483 VAL VAL E . n A 1 155 ALA 155 484 484 ALA ALA E . n A 1 156 GLY 156 485 485 GLY GLY E . n A 1 157 PHE 157 486 486 PHE PHE E . n A 1 158 ASN 158 487 487 ASN ASN E . n A 1 159 CYS 159 488 488 CYS CYS E . n A 1 160 TYR 160 489 489 TYR TYR E . n A 1 161 PHE 161 490 490 PHE PHE E . n A 1 162 PRO 162 491 491 PRO PRO E . n A 1 163 LEU 163 492 492 LEU LEU E . n A 1 164 ARG 164 493 493 ARG ARG E . n A 1 165 SER 165 494 494 SER SER E . n A 1 166 TYR 166 495 495 TYR TYR E . n A 1 167 SER 167 496 496 SER SER E . n A 1 168 PHE 168 497 497 PHE PHE E . n A 1 169 ARG 169 498 498 ARG ARG E . n A 1 170 PRO 170 499 499 PRO PRO E . n A 1 171 THR 171 500 500 THR THR E . n A 1 172 TYR 172 501 501 TYR TYR E . n A 1 173 GLY 173 502 502 GLY GLY E . n A 1 174 VAL 174 503 503 VAL VAL E . n A 1 175 GLY 175 504 504 GLY GLY E . n A 1 176 HIS 176 505 505 HIS HIS E . n A 1 177 GLN 177 506 506 GLN GLN E . n A 1 178 PRO 178 507 507 PRO PRO E . n A 1 179 TYR 179 508 508 TYR TYR E . n A 1 180 ARG 180 509 509 ARG ARG E . n A 1 181 VAL 181 510 510 VAL VAL E . n A 1 182 VAL 182 511 511 VAL VAL E . n A 1 183 VAL 183 512 512 VAL VAL E . n A 1 184 LEU 184 513 513 LEU LEU E . n A 1 185 SER 185 514 514 SER SER E . n A 1 186 PHE 186 515 515 PHE PHE E . n A 1 187 GLU 187 516 516 GLU GLU E . n A 1 188 LEU 188 517 517 LEU LEU E . n A 1 189 LEU 189 518 518 LEU LEU E . n A 1 190 HIS 190 519 519 HIS HIS E . n A 1 191 ALA 191 520 520 ALA ALA E . n A 1 192 PRO 192 521 521 PRO PRO E . n A 1 193 ALA 193 522 522 ALA ALA E . n A 1 194 THR 194 523 523 THR THR E . n A 1 195 VAL 195 524 524 VAL VAL E . n A 1 196 CYS 196 525 525 CYS CYS E . n A 1 197 GLY 197 526 526 GLY GLY E . n A 1 198 PRO 198 527 527 PRO PRO E . n A 1 199 LYS 199 528 528 LYS LYS E . n A 1 200 LYS 200 529 529 LYS LYS E . n A 1 201 SER 201 530 530 SER SER E . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 MET 2 2 2 MET MET H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 VAL 5 5 5 VAL VAL H . n B 2 6 GLN 6 6 6 GLN GLN H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLU 10 10 10 GLU GLU H . n B 2 11 VAL 11 11 11 VAL VAL H . n B 2 12 LYS 12 12 12 LYS LYS H . n B 2 13 LYS 13 13 13 LYS LYS H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 THR 16 16 16 THR THR H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 VAL 18 18 18 VAL VAL H . n B 2 19 LYS 19 19 19 LYS LYS H . n B 2 20 VAL 20 20 20 VAL VAL H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 LYS 23 23 23 LYS LYS H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 THR 30 30 30 THR THR H . n B 2 31 ASP 31 31 31 ASP ASP H . n B 2 32 VAL 32 32 32 VAL VAL H . n B 2 33 SER 33 33 33 SER SER H . n B 2 34 SER 34 34 34 SER SER H . n B 2 35 LEU 35 35 35 LEU LEU H . n B 2 36 GLN 36 36 36 GLN GLN H . n B 2 37 TRP 37 37 37 TRP TRP H . n B 2 38 VAL 38 38 38 VAL VAL H . n B 2 39 ARG 39 39 39 ARG ARG H . n B 2 40 GLN 40 40 40 GLN GLN H . n B 2 41 ALA 41 41 41 ALA ALA H . n B 2 42 ARG 42 42 42 ARG ARG H . n B 2 43 GLY 43 43 43 GLY GLY H . n B 2 44 GLN 44 44 44 GLN GLN H . n B 2 45 ARG 45 45 45 ARG ARG H . n B 2 46 LEU 46 46 46 LEU LEU H . n B 2 47 GLU 47 47 47 GLU GLU H . n B 2 48 TRP 48 48 48 TRP TRP H . n B 2 49 ILE 49 49 49 ILE ILE H . n B 2 50 GLY 50 50 50 GLY GLY H . n B 2 51 TRP 51 51 51 TRP TRP H . n B 2 52 THR 52 52 52 THR THR H . n B 2 53 VAL 53 53 53 VAL VAL H . n B 2 54 VAL 54 54 54 VAL VAL H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 THR 56 56 56 THR THR H . n B 2 57 GLY 57 57 57 GLY GLY H . n B 2 58 ASN 58 58 58 ASN ASN H . n B 2 59 THR 59 59 59 THR THR H . n B 2 60 ASN 60 60 60 ASN ASN H . n B 2 61 TYR 61 61 61 TYR TYR H . n B 2 62 ALA 62 62 62 ALA ALA H . n B 2 63 PRO 63 63 63 PRO PRO H . n B 2 64 ARG 64 64 64 ARG ARG H . n B 2 65 PHE 65 65 65 PHE PHE H . n B 2 66 GLN 66 66 66 GLN GLN H . n B 2 67 GLU 67 67 67 GLU GLU H . n B 2 68 ARG 68 68 68 ARG ARG H . n B 2 69 VAL 69 69 69 VAL VAL H . n B 2 70 THR 70 70 70 THR THR H . n B 2 71 ILE 71 71 71 ILE ILE H . n B 2 72 THR 72 72 72 THR THR H . n B 2 73 THR 73 73 73 THR THR H . n B 2 74 ASP 74 74 74 ASP ASP H . n B 2 75 LYS 75 75 75 LYS LYS H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 THR 77 77 77 THR THR H . n B 2 78 SER 78 78 78 SER SER H . n B 2 79 THR 79 79 79 THR THR H . n B 2 80 ALA 80 80 80 ALA ALA H . n B 2 81 TYR 81 81 81 TYR TYR H . n B 2 82 MET 82 82 82 MET MET H . n B 2 83 GLU 83 83 83 GLU GLU H . n B 2 84 LEU 84 84 84 LEU LEU H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 SER 86 86 86 SER SER H . n B 2 87 LEU 87 87 87 LEU LEU H . n B 2 88 ARG 88 88 88 ARG ARG H . n B 2 89 SER 89 89 89 SER SER H . n B 2 90 GLU 90 90 90 GLU GLU H . n B 2 91 ASP 91 91 91 ASP ASP H . n B 2 92 THR 92 92 92 THR THR H . n B 2 93 ALA 93 93 93 ALA ALA H . n B 2 94 VAL 94 94 94 VAL VAL H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 TYR 96 96 96 TYR TYR H . n B 2 97 CYS 97 97 97 CYS CYS H . n B 2 98 ALA 98 98 98 ALA ALA H . n B 2 99 ALA 99 99 99 ALA ALA H . n B 2 100 PRO 100 100 100 PRO PRO H . n B 2 101 PHE 101 101 101 PHE PHE H . n B 2 102 CYS 102 102 102 CYS CYS H . n B 2 103 SER 103 103 103 SER SER H . n B 2 104 GLU 104 104 104 GLU GLU H . n B 2 105 THR 105 105 105 THR THR H . n B 2 106 SER 106 106 106 SER SER H . n B 2 107 CYS 107 107 107 CYS CYS H . n B 2 108 SER 108 108 108 SER SER H . n B 2 109 ASP 109 109 109 ASP ASP H . n B 2 110 GLY 110 110 110 GLY GLY H . n B 2 111 PHE 111 111 111 PHE PHE H . n B 2 112 ASP 112 112 112 ASP ASP H . n B 2 113 LEU 113 113 113 LEU LEU H . n B 2 114 TRP 114 114 114 TRP TRP H . n B 2 115 GLY 115 115 115 GLY GLY H . n B 2 116 GLN 116 116 116 GLN GLN H . n B 2 117 GLY 117 117 117 GLY GLY H . n B 2 118 THR 118 118 118 THR THR H . n B 2 119 LYS 119 119 119 LYS LYS H . n B 2 120 VAL 120 120 120 VAL VAL H . n B 2 121 THR 121 121 121 THR THR H . n B 2 122 VAL 122 122 122 VAL VAL H . n B 2 123 SER 123 123 123 SER SER H . n C 3 1 GLU 1 1 1 GLU GLU L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 VAL 3 3 3 VAL VAL L . n C 3 4 LEU 4 4 4 LEU LEU L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 GLY 9 9 9 GLY GLY L . n C 3 10 THR 10 10 10 THR THR L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 LEU 13 13 13 LEU LEU L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 PRO 15 15 15 PRO PRO L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 ARG 18 18 18 ARG ARG L . n C 3 19 ALA 19 19 19 ALA ALA L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 LEU 21 21 21 LEU LEU L . n C 3 22 SER 22 22 22 SER SER L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 SER 28 28 28 SER SER L . n C 3 29 VAL 29 29 29 VAL VAL L . n C 3 30 ARG 30 30 30 ARG ARG L . n C 3 31 ILE 31 31 31 ILE ILE L . n C 3 32 SER 32 32 32 SER SER L . n C 3 33 TYR 33 33 33 TYR TYR L . n C 3 34 LEU 34 34 34 LEU LEU L . n C 3 35 ALA 35 35 35 ALA ALA L . n C 3 36 TRP 36 36 36 TRP TRP L . n C 3 37 TYR 37 37 37 TYR TYR L . n C 3 38 GLN 38 38 38 GLN GLN L . n C 3 39 GLN 39 39 39 GLN GLN L . n C 3 40 LYS 40 40 40 LYS LYS L . n C 3 41 PRO 41 41 41 PRO PRO L . n C 3 42 GLY 42 42 42 GLY GLY L . n C 3 43 GLN 43 43 43 GLN GLN L . n C 3 44 ALA 44 44 44 ALA ALA L . n C 3 45 PRO 45 45 45 PRO PRO L . n C 3 46 ARG 46 46 46 ARG ARG L . n C 3 47 LEU 47 47 47 LEU LEU L . n C 3 48 LEU 48 48 48 LEU LEU L . n C 3 49 ILE 49 49 49 ILE ILE L . n C 3 50 SER 50 50 50 SER SER L . n C 3 51 GLY 51 51 51 GLY GLY L . n C 3 52 SER 52 52 52 SER SER L . n C 3 53 SER 53 53 53 SER SER L . n C 3 54 SER 54 54 54 SER SER L . n C 3 55 ARG 55 55 55 ARG ARG L . n C 3 56 ALA 56 56 56 ALA ALA L . n C 3 57 THR 57 57 57 THR THR L . n C 3 58 GLY 58 58 58 GLY GLY L . n C 3 59 ILE 59 59 59 ILE ILE L . n C 3 60 PRO 60 60 60 PRO PRO L . n C 3 61 ASP 61 61 61 ASP ASP L . n C 3 62 ARG 62 62 62 ARG ARG L . n C 3 63 PHE 63 63 63 PHE PHE L . n C 3 64 SER 64 64 64 SER SER L . n C 3 65 ALA 65 65 65 ALA ALA L . n C 3 66 SER 66 66 66 SER SER L . n C 3 67 GLY 67 67 67 GLY GLY L . n C 3 68 SER 68 68 68 SER SER L . n C 3 69 GLY 69 69 69 GLY GLY L . n C 3 70 THR 70 70 70 THR THR L . n C 3 71 ASP 71 71 71 ASP ASP L . n C 3 72 PHE 72 72 72 PHE PHE L . n C 3 73 THR 73 73 73 THR THR L . n C 3 74 LEU 74 74 74 LEU LEU L . n C 3 75 THR 75 75 75 THR THR L . n C 3 76 ILE 76 76 76 ILE ILE L . n C 3 77 SER 77 77 77 SER SER L . n C 3 78 ARG 78 78 78 ARG ARG L . n C 3 79 LEU 79 79 79 LEU LEU L . n C 3 80 GLU 80 80 80 GLU GLU L . n C 3 81 PRO 81 81 81 PRO PRO L . n C 3 82 GLU 82 82 82 GLU GLU L . n C 3 83 ASP 83 83 83 ASP ASP L . n C 3 84 PHE 84 84 84 PHE PHE L . n C 3 85 ALA 85 85 85 ALA ALA L . n C 3 86 VAL 86 86 86 VAL VAL L . n C 3 87 TYR 87 87 87 TYR TYR L . n C 3 88 TYR 88 88 88 TYR TYR L . n C 3 89 CYS 89 89 89 CYS CYS L . n C 3 90 GLN 90 90 90 GLN GLN L . n C 3 91 GLN 91 91 91 GLN GLN L . n C 3 92 TYR 92 92 92 TYR TYR L . n C 3 93 ALA 93 93 93 ALA ALA L . n C 3 94 ASN 94 94 94 ASN ASN L . n C 3 95 SER 95 95 95 SER SER L . n C 3 96 PRO 96 96 96 PRO PRO L . n C 3 97 TRP 97 97 97 TRP TRP L . n C 3 98 THR 98 98 98 THR THR L . n C 3 99 PHE 99 99 99 PHE PHE L . n C 3 100 GLY 100 100 100 GLY GLY L . n C 3 101 GLN 101 101 101 GLN GLN L . n C 3 102 GLY 102 102 102 GLY GLY L . n C 3 103 THR 103 103 103 THR THR L . n C 3 104 LYS 104 104 104 LYS LYS L . n C 3 105 VAL 105 105 105 VAL VAL L . n C 3 106 GLU 106 106 106 GLU GLU L . n C 3 107 VAL 107 107 107 VAL VAL L . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email wonder_leilei@163.com _pdbx_contact_author.name_first Lei _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8519-0637 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7WED _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WED _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 527413 _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.5 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'SARS-CoV-2 Omicron mutation spike protein in complex with Fab 265' 'MULTIPLE SOURCES' COMPLEX '1, 2, 3' ? ? 2 1 ? 'SARS-CoV-2 Omicron mutation spike protein' RECOMBINANT COMPLEX 1 ? ? 3 1 ? 'Fab 265' RECOMBINANT COMPLEX 2,3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7WED _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN' _em_imaging.mode 'DARK FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2500 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WED _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WED _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 432 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 432 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 432 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.65 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 8.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO E 337 ? ? -86.46 46.06 2 1 SER E 438 ? ? -140.02 34.40 3 1 ALA E 484 ? ? -68.12 -179.21 4 1 SER H 7 ? ? -80.00 -168.21 5 1 THR H 16 ? ? -75.94 -167.84 6 1 THR H 30 ? ? 41.92 -131.04 7 1 ILE H 49 ? ? -103.16 -63.18 8 1 ALA H 93 ? ? -162.62 -165.75 9 1 GLU H 104 ? ? 71.63 -14.63 10 1 THR H 105 ? ? -122.96 -54.85 11 1 ILE L 31 ? ? -98.47 -60.57 12 1 SER L 52 ? ? 68.42 -3.45 13 1 PRO L 96 ? ? -36.42 122.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H ARG 45 ? CG ? B ARG 45 CG 2 1 Y 1 H ARG 45 ? CD ? B ARG 45 CD 3 1 Y 1 H ARG 45 ? NE ? B ARG 45 NE 4 1 Y 1 H ARG 45 ? CZ ? B ARG 45 CZ 5 1 Y 1 H ARG 45 ? NH1 ? B ARG 45 NH1 6 1 Y 1 H ARG 45 ? NH2 ? B ARG 45 NH2 7 1 Y 1 L GLU 1 ? CG ? C GLU 1 CG 8 1 Y 1 L GLU 1 ? CD ? C GLU 1 CD 9 1 Y 1 L GLU 1 ? OE1 ? C GLU 1 OE1 10 1 Y 1 L GLU 1 ? OE2 ? C GLU 1 OE2 11 1 Y 1 L ILE 2 ? CG1 ? C ILE 2 CG1 12 1 Y 1 L ILE 2 ? CG2 ? C ILE 2 CG2 13 1 Y 1 L ILE 2 ? CD1 ? C ILE 2 CD1 14 1 Y 1 L GLU 106 ? CG ? C GLU 106 CG 15 1 Y 1 L GLU 106 ? CD ? C GLU 106 CD 16 1 Y 1 L GLU 106 ? OE1 ? C GLU 106 OE1 17 1 Y 1 L GLU 106 ? OE2 ? C GLU 106 OE2 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 2 ? ? 9606 ? ? 'Homo sapiens' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 ? 9606 'Homo sapiens' ? ? 3 2 ? 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #