HEADER LIPID BINDING PROTEIN 23-DEC-21 7WEG TITLE COMPLEX STRUCTURE OF PDZD7 AND FCHSD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 7; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FCHSD2; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDZD7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PDZD7, HHD DOMAIN, MEMBRANE-TARGETING, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,L.LIN,Q.LU REVDAT 2 29-NOV-23 7WEG 1 REMARK REVDAT 1 16-NOV-22 7WEG 0 JRNL AUTH H.WANG,D.ZHAO,H.DU,X.ZHAI,S.WU,L.LIN,Z.XU,Q.LU JRNL TITL DEAFNESS-RELATED PROTEIN PDZD7 FORMS COMPLEX WITH THE JRNL TITL 2 C-TERMINAL TAIL OF FCHSD2. JRNL REF BIOCHEM.J. V. 479 1393 2022 JRNL REFN ESSN 1470-8728 JRNL PMID 35695292 JRNL DOI 10.1042/BCJ20220147 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 15749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6800 - 4.4400 1.00 1339 150 0.2223 0.2648 REMARK 3 2 4.4400 - 3.5300 0.99 1311 145 0.1884 0.2116 REMARK 3 3 3.5300 - 3.0900 0.99 1293 144 0.1798 0.2653 REMARK 3 4 3.0900 - 2.8000 0.99 1305 144 0.1995 0.2360 REMARK 3 5 2.8000 - 2.6000 0.99 1276 143 0.1983 0.2530 REMARK 3 6 2.6000 - 2.4500 0.98 1291 144 0.2104 0.2195 REMARK 3 7 2.4500 - 2.3300 0.99 1278 142 0.1993 0.2669 REMARK 3 8 2.3300 - 2.2300 0.98 1289 143 0.2122 0.2700 REMARK 3 9 2.2300 - 2.1400 0.98 1279 141 0.2290 0.2931 REMARK 3 10 2.1400 - 2.0700 0.98 1277 143 0.2576 0.3225 REMARK 3 11 2.0700 - 2.0000 0.96 1234 138 0.3011 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 851 THROUGH 855 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8767 5.4215 -14.6592 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2914 REMARK 3 T33: 0.2905 T12: -0.0177 REMARK 3 T13: -0.0604 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.1480 L22: 0.0821 REMARK 3 L33: 0.0992 L12: 0.0553 REMARK 3 L13: -0.0724 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.5845 S12: -0.1741 S13: 0.1205 REMARK 3 S21: 0.2084 S22: -0.2295 S23: -0.5680 REMARK 3 S31: 0.4659 S32: 0.1686 S33: -0.0024 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 856 THROUGH 873 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0855 3.1222 1.7576 REMARK 3 T TENSOR REMARK 3 T11: 0.3258 T22: 0.1869 REMARK 3 T33: 0.3078 T12: -0.0003 REMARK 3 T13: -0.0772 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.3413 L22: 0.2805 REMARK 3 L33: 0.0749 L12: -0.1789 REMARK 3 L13: -0.1285 L23: 0.2248 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0386 S13: 0.0333 REMARK 3 S21: -0.0606 S22: 0.0149 S23: 0.1961 REMARK 3 S31: -0.1052 S32: 0.0104 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 874 THROUGH 889 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9754 -7.8750 -2.0867 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.2256 REMARK 3 T33: 0.3060 T12: -0.0305 REMARK 3 T13: -0.0726 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.5666 L22: 0.3240 REMARK 3 L33: 0.5351 L12: 0.0412 REMARK 3 L13: 0.2128 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: -0.0896 S13: -0.1809 REMARK 3 S21: -0.0433 S22: -0.2002 S23: 0.3636 REMARK 3 S31: 0.0306 S32: -0.1828 S33: -0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 890 THROUGH 897 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3108 7.0969 8.2890 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.2212 REMARK 3 T33: 0.1262 T12: 0.1268 REMARK 3 T13: 0.2428 T23: -0.2286 REMARK 3 L TENSOR REMARK 3 L11: 1.5399 L22: 0.5828 REMARK 3 L33: 0.6752 L12: 0.3409 REMARK 3 L13: 0.5433 L23: 0.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.5615 S12: -0.1029 S13: 0.9968 REMARK 3 S21: -0.2648 S22: 0.1435 S23: -0.0338 REMARK 3 S31: 0.1573 S32: 0.4100 S33: 0.2529 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 898 THROUGH 905 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3556 6.9394 -2.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.3799 T22: 0.2197 REMARK 3 T33: 0.4890 T12: -0.0267 REMARK 3 T13: -0.1767 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.0116 REMARK 3 L33: 0.5618 L12: -0.0167 REMARK 3 L13: 0.0638 L23: -0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: 0.1107 S13: 0.2065 REMARK 3 S21: -0.4944 S22: 0.0317 S23: 0.4836 REMARK 3 S31: 0.0082 S32: 0.1340 S33: -0.0044 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 906 THROUGH 910 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1649 -3.0953 -6.6321 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1920 REMARK 3 T33: 0.3089 T12: -0.0176 REMARK 3 T13: -0.0180 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4687 L22: 0.4955 REMARK 3 L33: 1.3249 L12: -0.0619 REMARK 3 L13: 0.0883 L23: 0.7842 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: 0.1451 S13: -0.3134 REMARK 3 S21: 0.0378 S22: 0.3178 S23: 0.1243 REMARK 3 S31: -0.5903 S32: 0.0396 S33: 0.1120 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 911 THROUGH 919 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3115 -8.9283 -7.0184 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.2168 REMARK 3 T33: 0.3852 T12: 0.0165 REMARK 3 T13: -0.1562 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.0969 L22: 1.3798 REMARK 3 L33: 1.2440 L12: 0.2691 REMARK 3 L13: 0.2642 L23: 0.7258 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.4170 S13: -0.3545 REMARK 3 S21: -0.0278 S22: -0.0129 S23: -0.5066 REMARK 3 S31: -0.0954 S32: 0.3037 S33: 0.2492 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 920 THROUGH 932 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4834 -8.1785 3.2549 REMARK 3 T TENSOR REMARK 3 T11: 0.3837 T22: 0.1754 REMARK 3 T33: 0.2884 T12: 0.0171 REMARK 3 T13: -0.2217 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.1265 L22: 0.6674 REMARK 3 L33: 0.2217 L12: 1.1945 REMARK 3 L13: 0.1325 L23: 0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.4870 S12: -0.7581 S13: -1.0191 REMARK 3 S21: 0.1429 S22: -0.4199 S23: -0.6016 REMARK 3 S31: 0.7415 S32: 0.2520 S33: -0.0260 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 933 THROUGH 946 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8518 1.7349 -3.7433 REMARK 3 T TENSOR REMARK 3 T11: 0.3389 T22: 0.2145 REMARK 3 T33: 0.3752 T12: -0.0174 REMARK 3 T13: -0.1680 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.1198 L22: 0.1519 REMARK 3 L33: 0.6474 L12: 0.1510 REMARK 3 L13: -0.0565 L23: -0.0831 REMARK 3 S TENSOR REMARK 3 S11: -0.1954 S12: 0.4657 S13: -0.0295 REMARK 3 S21: -0.1743 S22: 0.1188 S23: 0.0482 REMARK 3 S31: -0.2096 S32: 0.3045 S33: -0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 851 THROUGH 873 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4325 -2.8714 -20.6328 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.2033 REMARK 3 T33: 0.2539 T12: -0.0214 REMARK 3 T13: -0.0744 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: -0.1197 L22: 0.2640 REMARK 3 L33: 0.3818 L12: -0.0829 REMARK 3 L13: 0.3246 L23: 0.0396 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: -0.0091 S13: -0.1900 REMARK 3 S21: 0.1233 S22: -0.0252 S23: -0.1073 REMARK 3 S31: 0.2159 S32: 0.0484 S33: -0.0007 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 874 THROUGH 889 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4667 8.5402 -30.3344 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.1863 REMARK 3 T33: 0.3008 T12: -0.0148 REMARK 3 T13: -0.1024 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0872 L22: 0.1410 REMARK 3 L33: 0.5550 L12: -0.0167 REMARK 3 L13: -0.2504 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.1085 S13: 0.2880 REMARK 3 S21: -0.3081 S22: 0.1404 S23: -0.1515 REMARK 3 S31: 0.0255 S32: 0.1463 S33: -0.0025 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 890 THROUGH 910 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8831 -3.8948 -23.2348 REMARK 3 T TENSOR REMARK 3 T11: 0.3784 T22: 0.2145 REMARK 3 T33: 0.2983 T12: 0.0256 REMARK 3 T13: -0.1348 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.1706 L22: 0.8881 REMARK 3 L33: 0.3438 L12: 0.3277 REMARK 3 L13: -0.0869 L23: -0.2420 REMARK 3 S TENSOR REMARK 3 S11: 0.2904 S12: -0.4374 S13: -0.5139 REMARK 3 S21: -0.2848 S22: 0.0178 S23: 0.0404 REMARK 3 S31: 0.2839 S32: -0.3528 S33: 0.0014 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 911 THROUGH 919 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6594 9.5437 -19.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.3623 T22: 0.2134 REMARK 3 T33: 0.2960 T12: -0.0045 REMARK 3 T13: -0.0978 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.2886 L22: 0.2302 REMARK 3 L33: 0.1480 L12: -0.1077 REMARK 3 L13: -0.1829 L23: 0.1842 REMARK 3 S TENSOR REMARK 3 S11: 0.3173 S12: 0.0198 S13: 0.0349 REMARK 3 S21: 0.2500 S22: -0.2154 S23: 0.1902 REMARK 3 S31: -0.5355 S32: 0.1534 S33: 0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 920 THROUGH 932 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7082 8.9349 -16.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.2845 T22: 0.2158 REMARK 3 T33: 0.2585 T12: -0.0252 REMARK 3 T13: -0.0442 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: -0.0091 L22: 0.3574 REMARK 3 L33: 1.3108 L12: -0.1288 REMARK 3 L13: 0.2340 L23: -0.7397 REMARK 3 S TENSOR REMARK 3 S11: -0.1412 S12: -0.2813 S13: 0.4027 REMARK 3 S21: 0.5999 S22: -0.0983 S23: -0.1024 REMARK 3 S31: -0.9555 S32: 0.2334 S33: -0.0046 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 933 THROUGH 938 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0278 -1.0499 -7.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.3366 REMARK 3 T33: 0.1746 T12: -0.0181 REMARK 3 T13: 0.1214 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.4129 L22: 4.0566 REMARK 3 L33: 2.2085 L12: 1.2659 REMARK 3 L13: 0.8422 L23: 2.9127 REMARK 3 S TENSOR REMARK 3 S11: -0.1006 S12: -0.4819 S13: 0.0247 REMARK 3 S21: -0.3628 S22: -0.3833 S23: 0.9218 REMARK 3 S31: -0.2090 S32: -0.3137 S33: -0.2820 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 939 THROUGH 946 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4556 -1.2011 -22.5989 REMARK 3 T TENSOR REMARK 3 T11: 0.4210 T22: 0.3103 REMARK 3 T33: 0.3248 T12: 0.0194 REMARK 3 T13: -0.1452 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.3825 L22: 0.0124 REMARK 3 L33: 0.5951 L12: -0.0074 REMARK 3 L13: 0.2712 L23: -0.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.2801 S12: -0.1982 S13: -0.3985 REMARK 3 S21: -0.4299 S22: -0.0680 S23: 0.9010 REMARK 3 S31: -0.1925 S32: -0.8029 S33: 0.0582 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 734 THROUGH 740 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9920 9.8986 -27.0556 REMARK 3 T TENSOR REMARK 3 T11: 0.3814 T22: 0.2809 REMARK 3 T33: 0.3939 T12: -0.0545 REMARK 3 T13: -0.1267 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.0643 L22: 0.0984 REMARK 3 L33: 0.2837 L12: 0.0567 REMARK 3 L13: 0.0572 L23: 0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.0129 S13: 0.1407 REMARK 3 S21: 0.1622 S22: -0.2803 S23: 0.0928 REMARK 3 S31: -0.5452 S32: -0.0521 S33: -0.0034 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 734 THROUGH 740 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1042 -9.2107 4.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2655 REMARK 3 T33: 0.2872 T12: -0.0233 REMARK 3 T13: -0.0768 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0868 L22: 0.1074 REMARK 3 L33: 0.0383 L12: -0.0969 REMARK 3 L13: -0.0191 L23: -0.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.1738 S12: -0.3944 S13: -0.3789 REMARK 3 S21: 0.1322 S22: -0.1412 S23: -0.0356 REMARK 3 S31: 0.3886 S32: -0.1929 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN B AND (RESID 14 THROUGH 84 OR REMARK 3 (RESID 85 THROUGH 86 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 87 THROUGH 109)) REMARK 3 ATOM PAIRS NUMBER : 582 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 38 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300026314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978460 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15785 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.747 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.73 REMARK 200 R MERGE FOR SHELL (I) : 0.71500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ZINC ACETATE DEHYDRATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.45900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 838 REMARK 465 PRO A 839 REMARK 465 GLY A 840 REMARK 465 SER A 841 REMARK 465 ARG A 842 REMARK 465 ILE A 843 REMARK 465 ALA A 844 REMARK 465 GLU A 845 REMARK 465 GLU A 846 REMARK 465 ALA A 847 REMARK 465 VAL A 848 REMARK 465 GLY A 849 REMARK 465 ASN A 850 REMARK 465 GLY B 838 REMARK 465 PRO B 839 REMARK 465 GLY B 840 REMARK 465 SER B 841 REMARK 465 ARG B 842 REMARK 465 ILE B 843 REMARK 465 ALA B 844 REMARK 465 GLU B 845 REMARK 465 GLU B 846 REMARK 465 ALA B 847 REMARK 465 VAL B 848 REMARK 465 GLY B 849 REMARK 465 ASN B 850 REMARK 465 GLY C 725 REMARK 465 PRO C 726 REMARK 465 GLY C 727 REMARK 465 SER C 728 REMARK 465 THR C 729 REMARK 465 GLU C 730 REMARK 465 LYS C 731 REMARK 465 MET C 732 REMARK 465 GLU C 733 REMARK 465 GLY D 725 REMARK 465 PRO D 726 REMARK 465 GLY D 727 REMARK 465 SER D 728 REMARK 465 THR D 729 REMARK 465 GLU D 730 REMARK 465 LYS D 731 REMARK 465 MET D 732 REMARK 465 GLU D 733 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1140 O HOH A 1149 1.80 REMARK 500 O HOH B 1149 O HOH B 1152 1.94 REMARK 500 O HOH A 1144 O HOH A 1152 1.96 REMARK 500 NE ARG B 944 O HOH B 1101 2.03 REMARK 500 O HOH B 1139 O HOH B 1148 2.05 REMARK 500 O HOH B 1123 O HOH B 1151 2.07 REMARK 500 O HOH B 1143 O HOH B 1145 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 906 CD GLU A 906 OE1 -0.069 REMARK 500 GLU A 906 CD GLU A 906 OE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 877 OE1 REMARK 620 2 GLU A 877 OE2 55.3 REMARK 620 3 CYS A 898 SG 51.0 104.8 REMARK 620 4 HOH A1107 O 79.8 132.4 41.1 REMARK 620 5 HOH A1127 O 92.3 89.4 105.6 76.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 906 OE1 REMARK 620 2 GLU A 916 OE2 112.7 REMARK 620 3 HOH A1137 O 137.3 89.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 877 OE1 REMARK 620 2 GLU B 877 OE2 52.1 REMARK 620 3 CYS B 898 SG 102.0 50.5 REMARK 620 4 HOH B1106 O 128.6 80.5 41.0 REMARK 620 5 HOH B1134 O 79.6 92.2 110.6 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 906 OE2 REMARK 620 2 GLU B 916 OE1 105.3 REMARK 620 3 HOH B1125 O 143.2 87.2 REMARK 620 N 1 2 DBREF 7WEG A 842 946 UNP E9Q9W7 PDZD7_MOUSE 842 946 DBREF 7WEG B 842 946 UNP E9Q9W7 PDZD7_MOUSE 842 946 DBREF 7WEG C 725 740 PDB 7WEG 7WEG 725 740 DBREF 7WEG D 725 740 PDB 7WEG 7WEG 725 740 SEQADV 7WEG GLY A 838 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG PRO A 839 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG GLY A 840 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG SER A 841 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG GLY B 838 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG PRO B 839 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG GLY B 840 UNP E9Q9W7 EXPRESSION TAG SEQADV 7WEG SER B 841 UNP E9Q9W7 EXPRESSION TAG SEQRES 1 A 109 GLY PRO GLY SER ARG ILE ALA GLU GLU ALA VAL GLY ASN SEQRES 2 A 109 VAL SER THR GLY ALA LEU ARG THR ILE THR LEU SER LYS SEQRES 3 A 109 MET LYS GLN SER LEU GLY ILE SER ILE SER GLY GLY ILE SEQRES 4 A 109 GLU SER LYS VAL GLN PRO MET VAL LYS ILE GLU LYS ILE SEQRES 5 A 109 PHE PRO GLY GLY ALA ALA PHE LEU CYS GLY ASP LEU GLN SEQRES 6 A 109 ALA GLY PHE GLU LEU VAL ALA VAL ASP GLY GLU SER LEU SEQRES 7 A 109 GLU GLN VAL THR HIS GLN ARG ALA VAL ASP THR ILE ARG SEQRES 8 A 109 ARG ALA TYR ARG ASN LYS ALA ARG GLU PRO MET GLU LEU SEQRES 9 A 109 VAL VAL ARG VAL PRO SEQRES 1 B 109 GLY PRO GLY SER ARG ILE ALA GLU GLU ALA VAL GLY ASN SEQRES 2 B 109 VAL SER THR GLY ALA LEU ARG THR ILE THR LEU SER LYS SEQRES 3 B 109 MET LYS GLN SER LEU GLY ILE SER ILE SER GLY GLY ILE SEQRES 4 B 109 GLU SER LYS VAL GLN PRO MET VAL LYS ILE GLU LYS ILE SEQRES 5 B 109 PHE PRO GLY GLY ALA ALA PHE LEU CYS GLY ASP LEU GLN SEQRES 6 B 109 ALA GLY PHE GLU LEU VAL ALA VAL ASP GLY GLU SER LEU SEQRES 7 B 109 GLU GLN VAL THR HIS GLN ARG ALA VAL ASP THR ILE ARG SEQRES 8 B 109 ARG ALA TYR ARG ASN LYS ALA ARG GLU PRO MET GLU LEU SEQRES 9 B 109 VAL VAL ARG VAL PRO SEQRES 1 C 16 GLY PRO GLY SER THR GLU LYS MET GLU ASP VAL GLU ILE SEQRES 2 C 16 THR LEU VAL SEQRES 1 D 16 GLY PRO GLY SER THR GLU LYS MET GLU ASP VAL GLU ILE SEQRES 2 D 16 THR LEU VAL HET ZN A1001 1 HET ZN A1002 1 HET ZN B1001 1 HET ZN B1002 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *132(H2 O) HELIX 1 AA1 ALA A 894 CYS A 898 5 5 HELIX 2 AA2 THR A 919 ASN A 933 1 15 HELIX 3 AA3 ALA B 894 CYS B 898 5 5 HELIX 4 AA4 THR B 919 ASN B 933 1 15 SHEET 1 AA1 4 LEU A 856 LEU A 861 0 SHEET 2 AA1 4 MET A 939 ARG A 944 -1 O MET A 939 N LEU A 861 SHEET 3 AA1 4 GLU A 906 VAL A 910 -1 N VAL A 908 O VAL A 942 SHEET 4 AA1 4 GLU A 913 SER A 914 -1 O GLU A 913 N VAL A 910 SHEET 1 AA2 3 LYS A 885 ILE A 889 0 SHEET 2 AA2 3 ILE A 870 SER A 873 -1 N SER A 871 O GLU A 887 SHEET 3 AA2 3 ILE D 737 LEU D 739 -1 O THR D 738 N ILE A 872 SHEET 1 AA3 4 LEU B 856 LEU B 861 0 SHEET 2 AA3 4 MET B 939 ARG B 944 -1 O LEU B 941 N ILE B 859 SHEET 3 AA3 4 GLU B 906 VAL B 910 -1 N VAL B 908 O VAL B 942 SHEET 4 AA3 4 GLU B 913 SER B 914 -1 O GLU B 913 N VAL B 910 SHEET 1 AA4 3 LYS B 885 ILE B 889 0 SHEET 2 AA4 3 ILE B 870 SER B 873 -1 N SER B 873 O LYS B 885 SHEET 3 AA4 3 ILE C 737 LEU C 739 -1 O THR C 738 N ILE B 872 LINK OE1 GLU A 877 ZN ZN A1001 1555 1555 2.08 LINK OE2 GLU A 877 ZN ZN A1001 1555 1555 2.54 LINK SG CYS A 898 ZN ZN A1001 1555 2455 2.27 LINK OE1 GLU A 906 ZN ZN A1002 1555 1555 2.20 LINK OE2 GLU A 916 ZN ZN A1002 1555 1555 2.01 LINK ZN ZN A1001 O HOH A1107 1555 2445 2.39 LINK ZN ZN A1001 O HOH A1127 1555 1555 1.94 LINK ZN ZN A1002 O HOH A1137 1555 1555 2.64 LINK OE1 GLU B 877 ZN ZN B1001 1555 1555 2.66 LINK OE2 GLU B 877 ZN ZN B1001 1555 1555 2.20 LINK SG CYS B 898 ZN ZN B1001 1555 2544 2.26 LINK OE2 GLU B 906 ZN ZN B1002 1555 1555 1.93 LINK OE1 GLU B 916 ZN ZN B1002 1555 1555 2.16 LINK ZN ZN B1001 O HOH B1106 1555 2554 2.33 LINK ZN ZN B1001 O HOH B1134 1555 2554 2.14 LINK ZN ZN B1002 O HOH B1125 1555 1555 2.65 CISPEP 1 GLU A 937 PRO A 938 0 -0.83 CISPEP 2 GLU B 937 PRO B 938 0 -0.25 CRYST1 41.603 62.918 46.030 90.00 95.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024037 0.000000 0.002183 0.00000 SCALE2 0.000000 0.015894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021814 0.00000