HEADER STRUCTURAL PROTEIN 29-DEC-21 7WH3 TITLE SOLUTION STRUCTURE OF HUMAN STOMATIN SPFH DOMAIN IN A PHOSPHATE BUFFER COMPND MOL_ID: 1; COMPND 2 MOLECULE: STOMATIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN,ERYTHROCYTE COMPND 5 MEMBRANE PROTEIN BAND 7.2,PROTEIN 7.2B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STOM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-HSTOM(SPFH) KEYWDS ERYTHROCYTE, MEMBRANE SKELETON, ACTIN BINDING, MOLECULAR SCAFFOLD, KEYWDS 2 BAND 7.2 PROTEIN, OLIGOMER/MULTIMER FORMATION, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KATAOKA,T.TENNO,N.GODA,E.HIBINO,H.HIROAKI REVDAT 3 15-MAY-24 7WH3 1 REMARK REVDAT 2 14-JUN-23 7WH3 1 REMARK REVDAT 1 08-JUN-22 7WH3 0 JRNL AUTH K.KATAOKA,S.SUZUKI,T.TENNO,N.GODA,E.HIBINO,A.OSHIMA, JRNL AUTH 2 H.HIROAKI JRNL TITL A CRYPTIC PHOSPHATE-BINDING POCKET ON THE SPFH DOMAIN OF JRNL TITL 2 HUMAN STOMATIN THAT REGULATES A NOVEL FIBRIL-LIKE JRNL TITL 3 SELF-ASSEMBLY JRNL REF CURR RES STRUCT BIOL V. 4 158 2022 JRNL REFN ESSN 2665-928X JRNL DOI 10.1016/J.CRSTBI.2022.05.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REMARK 4 REMARK 4 7WH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026612. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 UM [U-100% 15N] SPFH DOMAIN REMARK 210 FROM STOMATIN, 95% H2O/5% D2O; REMARK 210 600 UM [U-100% 13C; U-100% 15N] REMARK 210 SPFH DOMAIN FROM STOMATIN, 95% REMARK 210 H2O/5% D2O; 600 UM [U-100% 13C] REMARK 210 SPFH DOMAIN FROM STOMATIN, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 92 47.67 -176.42 REMARK 500 1 VAL A 94 133.47 65.80 REMARK 500 1 PRO A 105 99.06 -58.26 REMARK 500 1 ASN A 128 52.99 -94.62 REMARK 500 1 THR A 130 -71.22 -53.54 REMARK 500 1 LYS A 195 95.29 -179.52 REMARK 500 1 ASP A 196 64.37 163.56 REMARK 500 1 PRO A 200 -73.21 -59.01 REMARK 500 2 ASP A 92 -56.23 -155.98 REMARK 500 2 PRO A 105 95.03 -66.60 REMARK 500 2 ASN A 128 51.04 -94.72 REMARK 500 2 THR A 130 -82.26 -52.84 REMARK 500 2 LYS A 158 -168.07 -127.93 REMARK 500 2 ASP A 166 69.02 -112.88 REMARK 500 2 ARG A 191 143.21 -176.72 REMARK 500 2 LYS A 195 98.63 175.28 REMARK 500 2 ASP A 196 80.72 166.52 REMARK 500 2 PRO A 200 -76.44 -81.39 REMARK 500 3 PRO A 105 88.16 -54.78 REMARK 500 3 ASN A 128 52.55 -92.05 REMARK 500 3 THR A 130 -73.81 -54.86 REMARK 500 3 ASP A 166 67.32 -110.97 REMARK 500 3 GLU A 190 -73.28 -101.99 REMARK 500 3 LYS A 195 95.58 178.73 REMARK 500 3 ASP A 196 71.62 165.54 REMARK 500 4 SER A 91 -61.30 -165.98 REMARK 500 4 VAL A 94 49.63 -167.90 REMARK 500 4 PRO A 104 171.23 -58.49 REMARK 500 4 ASN A 128 50.50 -93.68 REMARK 500 4 THR A 130 -74.62 -49.51 REMARK 500 4 ASP A 166 74.09 -117.01 REMARK 500 4 GLU A 190 -65.07 -101.96 REMARK 500 4 LYS A 195 132.86 173.89 REMARK 500 4 ASP A 196 111.85 89.88 REMARK 500 5 ASP A 92 87.37 -155.38 REMARK 500 5 PRO A 105 95.73 -57.80 REMARK 500 5 ASN A 128 49.38 -100.31 REMARK 500 5 THR A 130 -81.81 -52.36 REMARK 500 5 ASP A 166 70.73 -118.10 REMARK 500 5 ARG A 191 128.22 -175.90 REMARK 500 5 LYS A 195 134.16 170.92 REMARK 500 5 ASP A 196 103.08 96.09 REMARK 500 5 PRO A 200 -71.32 -61.20 REMARK 500 6 SER A 91 155.58 61.06 REMARK 500 6 PRO A 105 97.19 -67.53 REMARK 500 6 ASN A 128 43.04 -109.08 REMARK 500 6 THR A 130 -77.06 -53.34 REMARK 500 6 ASP A 166 73.04 -115.29 REMARK 500 6 GLU A 190 -51.59 -124.76 REMARK 500 6 ARG A 191 139.81 -174.93 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11425 RELATED DB: BMRB DBREF 7WH3 A 94 202 UNP P27105 STOM_HUMAN 94 202 SEQADV 7WH3 GLY A 90 UNP P27105 EXPRESSION TAG SEQADV 7WH3 SER A 91 UNP P27105 EXPRESSION TAG SEQADV 7WH3 ASP A 92 UNP P27105 EXPRESSION TAG SEQADV 7WH3 HIS A 93 UNP P27105 EXPRESSION TAG SEQRES 1 A 113 GLY SER ASP HIS VAL ASP MET ARG THR ILE SER PHE ASP SEQRES 2 A 113 ILE PRO PRO GLN GLU ILE LEU THR LYS ASP SER VAL THR SEQRES 3 A 113 ILE SER VAL ASP GLY VAL VAL TYR TYR ARG VAL GLN ASN SEQRES 4 A 113 ALA THR LEU ALA VAL ALA ASN ILE THR ASN ALA ASP SER SEQRES 5 A 113 ALA THR ARG LEU LEU ALA GLN THR THR LEU ARG ASN VAL SEQRES 6 A 113 LEU GLY THR LYS ASN LEU SER GLN ILE LEU SER ASP ARG SEQRES 7 A 113 GLU GLU ILE ALA HIS ASN MET GLN SER THR LEU ASP ASP SEQRES 8 A 113 ALA THR ASP ALA TRP GLY ILE LYS VAL GLU ARG VAL GLU SEQRES 9 A 113 ILE LYS ASP VAL LYS LEU PRO VAL GLN HELIX 1 AA1 ASN A 128 ASN A 135 1 8 HELIX 2 AA2 ASN A 135 THR A 157 1 23 HELIX 3 AA3 ASN A 159 LEU A 164 1 6 HELIX 4 AA4 ASP A 166 ALA A 184 1 19 SHEET 1 AA1 3 ILE A 99 LEU A 109 0 SHEET 2 AA1 3 THR A 115 VAL A 126 -1 O VAL A 122 N PHE A 101 SHEET 3 AA1 3 ILE A 187 VAL A 197 -1 O LYS A 188 N ARG A 125 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1