HEADER HYDROLASE 30-DEC-21 7WHE TITLE THE MUTANT CRYSTAL STRUCTURE OF B-1,4-XYLANASE (XYNAF1_R246K) WITH TITLE 2 XYLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-XYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_COMMON: NEOSARTORYA FUMIGATA; SOURCE 4 ORGANISM_TAXID: 746128; SOURCE 5 GENE: CDV57_00377; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS GH10 FAMILY XYLANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.Q.LI,R.F.ZHANG REVDAT 2 29-NOV-23 7WHE 1 REMARK REVDAT 1 25-JAN-23 7WHE 0 JRNL AUTH G.Q.LI,R.F.ZHANG JRNL TITL THE MUTANT CRYSTAL STRUCTURE OF B-1,4-XYLANASE JRNL TITL 2 (XYNAF1_R246K) WITH XYLOBIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5037 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6882 ; 1.663 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 7.084 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;34.216 ;25.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;12.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 4.646 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3829 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6JDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.92700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.85050 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.92700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.85050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 THR A 328 REMARK 465 THR A 329 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 SER B 324 REMARK 465 GLY B 325 REMARK 465 SER B 326 REMARK 465 GLY B 327 REMARK 465 THR B 328 REMARK 465 THR B 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 200 O HOH B 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 883 O HOH B 891 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 144 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -25.90 -142.28 REMARK 500 GLU A 58 58.71 -145.22 REMARK 500 GLU A 242 38.90 -143.91 REMARK 500 ASP A 283 175.83 69.72 REMARK 500 ALA A 300 56.27 37.93 REMARK 500 GLU B 242 40.49 -144.66 REMARK 500 ASP B 283 179.35 68.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 18 PHE A 19 149.04 REMARK 500 TYR B 18 PHE B 19 147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 968 DISTANCE = 5.88 ANGSTROMS DBREF1 7WHE A 5 329 UNP A0A229WLM4_ASPFM DBREF2 7WHE A A0A229WLM4 20 344 DBREF1 7WHE B 5 329 UNP A0A229WLM4_ASPFM DBREF2 7WHE B A0A229WLM4 20 344 SEQADV 7WHE GLU A 1 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE ALA A 2 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE GLU A 3 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE ALA A 4 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE LYS A 246 UNP A0A229WLM ARG 261 ENGINEERED MUTATION SEQADV 7WHE GLU B 1 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE ALA B 2 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE GLU B 3 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE ALA B 4 UNP A0A229WLM EXPRESSION TAG SEQADV 7WHE LYS B 246 UNP A0A229WLM ARG 261 ENGINEERED MUTATION SEQRES 1 A 329 GLU ALA GLU ALA ALA GLY LEU ASN THR ALA ALA LYS ALA SEQRES 2 A 329 LYS GLY LEU LYS TYR PHE GLY SER ALA THR ASP ASN PRO SEQRES 3 A 329 GLU LEU THR ASP SER ALA TYR VAL ALA GLN LEU SER ASN SEQRES 4 A 329 THR ASP ASP PHE GLY GLN ILE THR PRO GLY ASN SER MET SEQRES 5 A 329 LYS TRP ASP ALA THR GLU PRO SER GLN ASN SER PHE SER SEQRES 6 A 329 PHE ALA ASN GLY ASP ALA VAL VAL ASN LEU ALA ASN LYS SEQRES 7 A 329 ASN GLY GLN LEU MET ARG CYS HIS THR LEU VAL TRP HIS SEQRES 8 A 329 SER GLN LEU PRO ASN TRP VAL SER SER GLY SER TRP THR SEQRES 9 A 329 ASN ALA THR LEU LEU ALA ALA MET LYS ASN HIS ILE THR SEQRES 10 A 329 ASN VAL VAL THR HIS TYR LYS GLY LYS CYS TYR ALA TRP SEQRES 11 A 329 ASP VAL VAL ASN GLU ALA LEU ASN GLU ASP GLY THR PHE SEQRES 12 A 329 ARG ASN SER VAL PHE TYR GLN ILE ILE GLY PRO ALA TYR SEQRES 13 A 329 ILE PRO ILE ALA PHE ALA THR ALA ALA ALA ALA ASP PRO SEQRES 14 A 329 ASP VAL LYS LEU TYR TYR ASN ASP TYR ASN ILE GLU TYR SEQRES 15 A 329 SER GLY ALA LYS ALA THR ALA ALA GLN ASN ILE VAL LYS SEQRES 16 A 329 MET ILE LYS ALA TYR GLY ALA LYS ILE ASP GLY VAL GLY SEQRES 17 A 329 LEU GLN ALA HIS PHE ILE VAL GLY SER THR PRO SER GLN SEQRES 18 A 329 SER ASP LEU THR THR VAL LEU LYS GLY TYR THR ALA LEU SEQRES 19 A 329 GLY VAL GLU VAL ALA TYR THR GLU LEU ASP ILE LYS MET SEQRES 20 A 329 GLN LEU PRO SER THR ALA ALA LYS LEU ALA GLN GLN SER SEQRES 21 A 329 THR ASP PHE GLN GLY VAL ALA ALA ALA CYS VAL SER THR SEQRES 22 A 329 THR GLY CYS VAL GLY VAL THR ILE TRP ASP TRP THR ASP SEQRES 23 A 329 LYS TYR SER TRP VAL PRO SER VAL PHE GLN GLY TYR GLY SEQRES 24 A 329 ALA PRO LEU PRO TRP ASP GLU ASN TYR VAL LYS LYS PRO SEQRES 25 A 329 ALA TYR ASP GLY LEU MET ALA GLY LEU GLY ALA SER GLY SEQRES 26 A 329 SER GLY THR THR SEQRES 1 B 329 GLU ALA GLU ALA ALA GLY LEU ASN THR ALA ALA LYS ALA SEQRES 2 B 329 LYS GLY LEU LYS TYR PHE GLY SER ALA THR ASP ASN PRO SEQRES 3 B 329 GLU LEU THR ASP SER ALA TYR VAL ALA GLN LEU SER ASN SEQRES 4 B 329 THR ASP ASP PHE GLY GLN ILE THR PRO GLY ASN SER MET SEQRES 5 B 329 LYS TRP ASP ALA THR GLU PRO SER GLN ASN SER PHE SER SEQRES 6 B 329 PHE ALA ASN GLY ASP ALA VAL VAL ASN LEU ALA ASN LYS SEQRES 7 B 329 ASN GLY GLN LEU MET ARG CYS HIS THR LEU VAL TRP HIS SEQRES 8 B 329 SER GLN LEU PRO ASN TRP VAL SER SER GLY SER TRP THR SEQRES 9 B 329 ASN ALA THR LEU LEU ALA ALA MET LYS ASN HIS ILE THR SEQRES 10 B 329 ASN VAL VAL THR HIS TYR LYS GLY LYS CYS TYR ALA TRP SEQRES 11 B 329 ASP VAL VAL ASN GLU ALA LEU ASN GLU ASP GLY THR PHE SEQRES 12 B 329 ARG ASN SER VAL PHE TYR GLN ILE ILE GLY PRO ALA TYR SEQRES 13 B 329 ILE PRO ILE ALA PHE ALA THR ALA ALA ALA ALA ASP PRO SEQRES 14 B 329 ASP VAL LYS LEU TYR TYR ASN ASP TYR ASN ILE GLU TYR SEQRES 15 B 329 SER GLY ALA LYS ALA THR ALA ALA GLN ASN ILE VAL LYS SEQRES 16 B 329 MET ILE LYS ALA TYR GLY ALA LYS ILE ASP GLY VAL GLY SEQRES 17 B 329 LEU GLN ALA HIS PHE ILE VAL GLY SER THR PRO SER GLN SEQRES 18 B 329 SER ASP LEU THR THR VAL LEU LYS GLY TYR THR ALA LEU SEQRES 19 B 329 GLY VAL GLU VAL ALA TYR THR GLU LEU ASP ILE LYS MET SEQRES 20 B 329 GLN LEU PRO SER THR ALA ALA LYS LEU ALA GLN GLN SER SEQRES 21 B 329 THR ASP PHE GLN GLY VAL ALA ALA ALA CYS VAL SER THR SEQRES 22 B 329 THR GLY CYS VAL GLY VAL THR ILE TRP ASP TRP THR ASP SEQRES 23 B 329 LYS TYR SER TRP VAL PRO SER VAL PHE GLN GLY TYR GLY SEQRES 24 B 329 ALA PRO LEU PRO TRP ASP GLU ASN TYR VAL LYS LYS PRO SEQRES 25 B 329 ALA TYR ASP GLY LEU MET ALA GLY LEU GLY ALA SER GLY SEQRES 26 B 329 SER GLY THR THR HET XYS C 1 10 HET XYP C 2 9 HET NAG A 601 14 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL B 601 6 HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 XYS C5 H10 O5 FORMUL 3 XYP C5 H10 O5 FORMUL 4 NAG C8 H15 N O6 FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 HOH *480(H2 O) HELIX 1 AA1 GLY A 6 LYS A 14 1 9 HELIX 2 AA2 ASP A 24 THR A 29 5 6 HELIX 3 AA3 ASP A 30 SER A 38 1 9 HELIX 4 AA4 LYS A 53 GLU A 58 1 6 HELIX 5 AA5 PHE A 66 GLY A 80 1 15 HELIX 6 AA6 PRO A 95 SER A 100 1 6 HELIX 7 AA7 THR A 104 TYR A 123 1 20 HELIX 8 AA8 SER A 146 GLY A 153 1 8 HELIX 9 AA9 ALA A 155 ASP A 168 1 14 HELIX 10 AB1 GLY A 184 GLY A 201 1 18 HELIX 11 AB2 SER A 220 ALA A 233 1 14 HELIX 12 AB3 THR A 252 SER A 272 1 21 HELIX 13 AB4 THR A 285 SER A 289 5 5 HELIX 14 AB5 PRO A 292 GLN A 296 5 5 HELIX 15 AB6 LYS A 311 LEU A 321 1 11 HELIX 16 AB7 GLY B 6 LYS B 14 1 9 HELIX 17 AB8 ASP B 24 THR B 29 5 6 HELIX 18 AB9 ASP B 30 SER B 38 1 9 HELIX 19 AC1 LYS B 53 GLU B 58 1 6 HELIX 20 AC2 PHE B 66 GLY B 80 1 15 HELIX 21 AC3 PRO B 95 SER B 100 1 6 HELIX 22 AC4 THR B 104 TYR B 123 1 20 HELIX 23 AC5 SER B 146 ILE B 152 1 7 HELIX 24 AC6 ALA B 155 ASP B 168 1 14 HELIX 25 AC7 GLY B 184 GLY B 201 1 18 HELIX 26 AC8 SER B 220 ALA B 233 1 14 HELIX 27 AC9 THR B 252 SER B 272 1 21 HELIX 28 AD1 THR B 285 SER B 289 5 5 HELIX 29 AD2 PRO B 292 GLN B 296 5 5 HELIX 30 AD3 LYS B 311 LEU B 321 1 11 SHEET 1 AA111 HIS A 212 ILE A 214 0 SHEET 2 AA111 TYR A 298 GLY A 299 0 SHEET 3 AA111 GLY A 206 LEU A 209 0 SHEET 4 AA111 LYS A 172 ASP A 177 1 N TYR A 175 O GLY A 208 SHEET 5 AA111 ALA A 129 ASN A 134 1 N TRP A 130 O TYR A 174 SHEET 6 AA111 LEU A 82 VAL A 89 1 N CYS A 85 O ALA A 129 SHEET 7 AA111 GLN A 45 PRO A 48 1 N ILE A 46 O LEU A 82 SHEET 8 AA111 TYR A 18 THR A 23 1 N SER A 21 O GLN A 45 SHEET 9 AA111 CYS A 276 ILE A 281 1 O VAL A 279 N GLY A 20 SHEET 10 AA111 GLU A 237 GLN A 248 1 N VAL A 238 O VAL A 277 SHEET 11 AA111 TYR A 298 GLY A 299 -1 O GLY A 299 N MET A 247 SHEET 1 AA211 HIS B 212 ILE B 214 0 SHEET 2 AA211 TYR B 298 GLY B 299 0 SHEET 3 AA211 GLY B 206 LEU B 209 0 SHEET 4 AA211 LYS B 172 ASP B 177 1 N TYR B 175 O GLY B 208 SHEET 5 AA211 ALA B 129 ASN B 134 1 N TRP B 130 O TYR B 174 SHEET 6 AA211 LEU B 82 VAL B 89 1 N CYS B 85 O ALA B 129 SHEET 7 AA211 GLN B 45 PRO B 48 1 N ILE B 46 O LEU B 82 SHEET 8 AA211 TYR B 18 THR B 23 1 N THR B 23 O THR B 47 SHEET 9 AA211 CYS B 276 ILE B 281 1 O VAL B 279 N GLY B 20 SHEET 10 AA211 GLU B 237 GLN B 248 1 N LEU B 243 O THR B 280 SHEET 11 AA211 TYR B 298 GLY B 299 -1 O GLY B 299 N MET B 247 SSBOND 1 CYS A 85 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 270 CYS A 276 1555 1555 2.08 SSBOND 3 CYS B 85 CYS B 127 1555 1555 2.06 SSBOND 4 CYS B 270 CYS B 276 1555 1555 2.08 LINK ND2 ASN A 105 C1 NAG A 601 1555 1555 1.44 LINK O4 XYS C 1 C1 XYP C 2 1555 1555 1.45 CISPEP 1 HIS A 86 THR A 87 0 -4.49 CISPEP 2 LEU A 249 PRO A 250 0 0.19 CISPEP 3 HIS B 86 THR B 87 0 -3.53 CISPEP 4 LEU B 249 PRO B 250 0 1.89 CRYST1 68.056 85.854 97.701 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010235 0.00000