HEADER HYDROLASE 03-JAN-22 7WIK TITLE CRYSTAL STRUCTURE OF OLIGORIBONUCLEASE OF MYCOBACTERIUM SMEGMATIS MC2 TITLE 2 155 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.13.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 GENE: ORN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-HIS10-SMT3 KEYWDS OLIGORIBONUCLEASE, ORN, RNASE H-LIKE FOLD, DNAQ LIKE EXORIBONUCLEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BADHWAR,B.TANEJA REVDAT 2 29-NOV-23 7WIK 1 REMARK REVDAT 1 21-DEC-22 7WIK 0 JRNL AUTH P.BADHWAR,S.H.KHAN,B.TANEJA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A MYCOBACTERIAL JRNL TITL 2 OLIGORIBONUCLEASE REVEALS A UNIQUE C-TERMINAL TAIL THAT JRNL TITL 3 STABILIZES THE HOMODIMER. JRNL REF J.BIOL.CHEM. V. 298 02595 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36244449 JRNL DOI 10.1016/J.JBC.2022.102595 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 67736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.74000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : -2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.776 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6611 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6300 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9005 ; 1.461 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14583 ; 1.353 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ; 6.154 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 371 ;29.865 ;21.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1179 ;13.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 65 ;16.302 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 886 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7376 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 196 B 1 196 6266 0.080 0.050 REMARK 3 2 A 1 196 C 1 196 6261 0.070 0.050 REMARK 3 3 A 1 196 D 1 196 6185 0.090 0.050 REMARK 3 4 B 1 196 C 1 196 6421 0.070 0.050 REMARK 3 5 B 1 196 D 1 196 6312 0.080 0.050 REMARK 3 6 C 1 196 D 1 196 6370 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300024663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8-9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 26, 2018 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71290 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 81.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 2IGI REMARK 200 REMARK 200 REMARK: THICK, LONG RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH8.4, 0.2M LITHIUM REMARK 280 SULPHATE, 30% V/V PEG-4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 155 REMARK 465 ALA A 156 REMARK 465 HIS A 157 REMARK 465 GLY A 197 REMARK 465 PRO A 198 REMARK 465 PRO A 199 REMARK 465 SER A 200 REMARK 465 SER A 201 REMARK 465 ASN A 202 REMARK 465 SER A 203 REMARK 465 ALA A 204 REMARK 465 ASP A 205 REMARK 465 THR A 206 REMARK 465 ASP A 207 REMARK 465 SER A 208 REMARK 465 ALA A 209 REMARK 465 SER B 0 REMARK 465 GLY B 197 REMARK 465 PRO B 198 REMARK 465 PRO B 199 REMARK 465 SER B 200 REMARK 465 SER B 201 REMARK 465 ASN B 202 REMARK 465 SER B 203 REMARK 465 ALA B 204 REMARK 465 ASP B 205 REMARK 465 THR B 206 REMARK 465 ASP B 207 REMARK 465 SER B 208 REMARK 465 ALA B 209 REMARK 465 SER C 0 REMARK 465 GLY C 197 REMARK 465 PRO C 198 REMARK 465 PRO C 199 REMARK 465 SER C 200 REMARK 465 SER C 201 REMARK 465 ASN C 202 REMARK 465 SER C 203 REMARK 465 ALA C 204 REMARK 465 ASP C 205 REMARK 465 THR C 206 REMARK 465 ASP C 207 REMARK 465 SER C 208 REMARK 465 ALA C 209 REMARK 465 SER D 0 REMARK 465 GLY D 197 REMARK 465 PRO D 198 REMARK 465 PRO D 199 REMARK 465 SER D 200 REMARK 465 SER D 201 REMARK 465 ASN D 202 REMARK 465 SER D 203 REMARK 465 ALA D 204 REMARK 465 ASP D 205 REMARK 465 THR D 206 REMARK 465 ASP D 207 REMARK 465 SER D 208 REMARK 465 ALA D 209 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 155 CB CG CD1 CD2 REMARK 480 LEU D 155 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -28.82 -145.67 REMARK 500 THR A 99 -50.70 -120.38 REMARK 500 THR A 99 -51.13 -120.16 REMARK 500 THR A 176 -51.96 -122.91 REMARK 500 SER B 19 -28.80 -147.70 REMARK 500 THR B 99 -50.46 -120.39 REMARK 500 THR B 99 -51.18 -120.02 REMARK 500 THR B 176 -50.85 -122.39 REMARK 500 SER C 19 -28.12 -148.46 REMARK 500 THR C 99 -51.28 -121.14 REMARK 500 THR C 99 -52.36 -120.42 REMARK 500 THR C 176 -52.61 -121.73 REMARK 500 ARG D 2 64.22 -155.62 REMARK 500 SER D 19 -30.31 -147.23 REMARK 500 THR D 176 -52.81 -122.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 601 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 9 OD2 40.8 REMARK 620 3 CYS A 10 O 71.2 72.3 REMARK 620 4 GLU A 11 OE1 132.8 101.5 69.8 REMARK 620 5 GLU A 11 OE2 102.6 63.6 73.4 40.9 REMARK 620 6 ASP A 162 OD2 84.5 55.8 121.3 93.9 60.7 REMARK 620 7 HOH A 736 O 67.3 104.4 64.2 115.6 137.5 148.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASP B 9 OD2 39.1 REMARK 620 3 CYS B 10 O 65.9 65.5 REMARK 620 4 GLU B 11 OE1 122.0 92.2 65.1 REMARK 620 5 GLU B 11 OE2 95.0 57.9 67.7 37.8 REMARK 620 6 ASP B 162 OD2 82.9 54.1 112.4 88.6 56.8 REMARK 620 7 HOH B 433 O 57.0 90.5 56.6 113.7 123.7 139.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 9 OD1 REMARK 620 2 ASP C 9 OD2 38.5 REMARK 620 3 CYS C 10 O 65.1 66.9 REMARK 620 4 GLU C 11 OE1 127.1 98.7 69.6 REMARK 620 5 GLU C 11 OE2 97.5 60.9 72.0 41.8 REMARK 620 6 ASP C 162 OD2 82.2 55.5 117.5 96.0 60.9 REMARK 620 7 HOH C 431 O 59.6 93.6 57.2 114.1 129.0 140.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 66 OG REMARK 620 2 HIS C 157 O 118.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 9 OD1 REMARK 620 2 ASP D 9 OD2 42.1 REMARK 620 3 CYS D 10 O 67.4 70.8 REMARK 620 4 GLU D 11 OE1 130.7 102.3 68.6 REMARK 620 5 GLU D 11 OE2 105.2 65.7 74.4 41.2 REMARK 620 6 ASP D 162 OD2 89.8 60.1 124.8 97.8 63.9 REMARK 620 7 HOH D 660 O 64.2 101.6 58.2 108.3 132.1 151.2 REMARK 620 N 1 2 3 4 5 6 DBREF 7WIK A 1 209 UNP A0R1E6 A0R1E6_MYCS2 8 216 DBREF 7WIK B 1 209 UNP A0R1E6 A0R1E6_MYCS2 8 216 DBREF 7WIK C 1 209 UNP A0R1E6 A0R1E6_MYCS2 8 216 DBREF 7WIK D 1 209 UNP A0R1E6 A0R1E6_MYCS2 8 216 SEQADV 7WIK SER A 0 UNP A0R1E6 EXPRESSION TAG SEQADV 7WIK SER B 0 UNP A0R1E6 EXPRESSION TAG SEQADV 7WIK SER C 0 UNP A0R1E6 EXPRESSION TAG SEQADV 7WIK SER D 0 UNP A0R1E6 EXPRESSION TAG SEQRES 1 A 210 SER VAL ARG ASP GLU LEU VAL TRP ILE ASP CYS GLU MET SEQRES 2 A 210 THR GLY LEU ASP LEU LYS SER ASP ARG LEU ILE GLU ILE SEQRES 3 A 210 ALA VAL LEU VAL THR ASP ALA ASP LEU ASN ILE LEU GLY SEQRES 4 A 210 ASP GLY LEU ASP VAL VAL ILE HIS ALA ASP ASP GLU SER SEQRES 5 A 210 LEU SER SER MET VAL ASP VAL VAL LYS GLN MET HIS ALA SEQRES 6 A 210 ARG SER GLY LEU THR GLU GLU VAL ARG ARG SER THR VAL SEQRES 7 A 210 ASP LEU ALA THR ALA GLU GLU MET VAL LEU ASP TYR ILE SEQRES 8 A 210 ARG GLY HIS VAL LYS GLN ALA LYS THR ALA PRO LEU ALA SEQRES 9 A 210 GLY ASN SER ILE ALA THR ASP ARG GLY PHE ILE ALA ARG SEQRES 10 A 210 ASP MET PRO LYS LEU ASP ASP TYR LEU HIS TYR ARG MET SEQRES 11 A 210 ILE ASP VAL SER SER ILE LYS GLU LEU CYS ARG ARG TRP SEQRES 12 A 210 TYR PRO ARG ILE TYR PHE GLY GLN PRO GLU LYS GLY LEU SEQRES 13 A 210 ALA HIS ARG ALA LEU ALA ASP ILE HIS GLU SER ILE ARG SEQRES 14 A 210 GLU LEU LYS TYR TYR ARG ALA THR ALA PHE VAL PRO GLN SEQRES 15 A 210 PRO GLY PRO SER THR SER ASP ILE ALA ALA ILE ALA ALA SEQRES 16 A 210 GLU LEU GLY PRO PRO SER SER ASN SER ALA ASP THR ASP SEQRES 17 A 210 SER ALA SEQRES 1 B 210 SER VAL ARG ASP GLU LEU VAL TRP ILE ASP CYS GLU MET SEQRES 2 B 210 THR GLY LEU ASP LEU LYS SER ASP ARG LEU ILE GLU ILE SEQRES 3 B 210 ALA VAL LEU VAL THR ASP ALA ASP LEU ASN ILE LEU GLY SEQRES 4 B 210 ASP GLY LEU ASP VAL VAL ILE HIS ALA ASP ASP GLU SER SEQRES 5 B 210 LEU SER SER MET VAL ASP VAL VAL LYS GLN MET HIS ALA SEQRES 6 B 210 ARG SER GLY LEU THR GLU GLU VAL ARG ARG SER THR VAL SEQRES 7 B 210 ASP LEU ALA THR ALA GLU GLU MET VAL LEU ASP TYR ILE SEQRES 8 B 210 ARG GLY HIS VAL LYS GLN ALA LYS THR ALA PRO LEU ALA SEQRES 9 B 210 GLY ASN SER ILE ALA THR ASP ARG GLY PHE ILE ALA ARG SEQRES 10 B 210 ASP MET PRO LYS LEU ASP ASP TYR LEU HIS TYR ARG MET SEQRES 11 B 210 ILE ASP VAL SER SER ILE LYS GLU LEU CYS ARG ARG TRP SEQRES 12 B 210 TYR PRO ARG ILE TYR PHE GLY GLN PRO GLU LYS GLY LEU SEQRES 13 B 210 ALA HIS ARG ALA LEU ALA ASP ILE HIS GLU SER ILE ARG SEQRES 14 B 210 GLU LEU LYS TYR TYR ARG ALA THR ALA PHE VAL PRO GLN SEQRES 15 B 210 PRO GLY PRO SER THR SER ASP ILE ALA ALA ILE ALA ALA SEQRES 16 B 210 GLU LEU GLY PRO PRO SER SER ASN SER ALA ASP THR ASP SEQRES 17 B 210 SER ALA SEQRES 1 C 210 SER VAL ARG ASP GLU LEU VAL TRP ILE ASP CYS GLU MET SEQRES 2 C 210 THR GLY LEU ASP LEU LYS SER ASP ARG LEU ILE GLU ILE SEQRES 3 C 210 ALA VAL LEU VAL THR ASP ALA ASP LEU ASN ILE LEU GLY SEQRES 4 C 210 ASP GLY LEU ASP VAL VAL ILE HIS ALA ASP ASP GLU SER SEQRES 5 C 210 LEU SER SER MET VAL ASP VAL VAL LYS GLN MET HIS ALA SEQRES 6 C 210 ARG SER GLY LEU THR GLU GLU VAL ARG ARG SER THR VAL SEQRES 7 C 210 ASP LEU ALA THR ALA GLU GLU MET VAL LEU ASP TYR ILE SEQRES 8 C 210 ARG GLY HIS VAL LYS GLN ALA LYS THR ALA PRO LEU ALA SEQRES 9 C 210 GLY ASN SER ILE ALA THR ASP ARG GLY PHE ILE ALA ARG SEQRES 10 C 210 ASP MET PRO LYS LEU ASP ASP TYR LEU HIS TYR ARG MET SEQRES 11 C 210 ILE ASP VAL SER SER ILE LYS GLU LEU CYS ARG ARG TRP SEQRES 12 C 210 TYR PRO ARG ILE TYR PHE GLY GLN PRO GLU LYS GLY LEU SEQRES 13 C 210 ALA HIS ARG ALA LEU ALA ASP ILE HIS GLU SER ILE ARG SEQRES 14 C 210 GLU LEU LYS TYR TYR ARG ALA THR ALA PHE VAL PRO GLN SEQRES 15 C 210 PRO GLY PRO SER THR SER ASP ILE ALA ALA ILE ALA ALA SEQRES 16 C 210 GLU LEU GLY PRO PRO SER SER ASN SER ALA ASP THR ASP SEQRES 17 C 210 SER ALA SEQRES 1 D 210 SER VAL ARG ASP GLU LEU VAL TRP ILE ASP CYS GLU MET SEQRES 2 D 210 THR GLY LEU ASP LEU LYS SER ASP ARG LEU ILE GLU ILE SEQRES 3 D 210 ALA VAL LEU VAL THR ASP ALA ASP LEU ASN ILE LEU GLY SEQRES 4 D 210 ASP GLY LEU ASP VAL VAL ILE HIS ALA ASP ASP GLU SER SEQRES 5 D 210 LEU SER SER MET VAL ASP VAL VAL LYS GLN MET HIS ALA SEQRES 6 D 210 ARG SER GLY LEU THR GLU GLU VAL ARG ARG SER THR VAL SEQRES 7 D 210 ASP LEU ALA THR ALA GLU GLU MET VAL LEU ASP TYR ILE SEQRES 8 D 210 ARG GLY HIS VAL LYS GLN ALA LYS THR ALA PRO LEU ALA SEQRES 9 D 210 GLY ASN SER ILE ALA THR ASP ARG GLY PHE ILE ALA ARG SEQRES 10 D 210 ASP MET PRO LYS LEU ASP ASP TYR LEU HIS TYR ARG MET SEQRES 11 D 210 ILE ASP VAL SER SER ILE LYS GLU LEU CYS ARG ARG TRP SEQRES 12 D 210 TYR PRO ARG ILE TYR PHE GLY GLN PRO GLU LYS GLY LEU SEQRES 13 D 210 ALA HIS ARG ALA LEU ALA ASP ILE HIS GLU SER ILE ARG SEQRES 14 D 210 GLU LEU LYS TYR TYR ARG ALA THR ALA PHE VAL PRO GLN SEQRES 15 D 210 PRO GLY PRO SER THR SER ASP ILE ALA ALA ILE ALA ALA SEQRES 16 D 210 GLU LEU GLY PRO PRO SER SER ASN SER ALA ASP THR ASP SEQRES 17 D 210 SER ALA HET K A 601 1 HET ACT A 602 4 HET ACT A 603 4 HET SO4 A 604 5 HET GOL A 605 6 HET SO4 B 301 9 HET K B 302 1 HET ACT B 303 4 HET ACT B 304 4 HET SO4 B 305 5 HET SO4 B 306 5 HET GOL B 307 6 HET SO4 B 308 5 HET SO4 C 301 5 HET K C 302 1 HET ACT C 303 7 HET ACT C 304 4 HET ACT C 305 4 HET SO4 C 306 5 HET SO4 C 307 5 HET SO4 C 308 9 HET GOL C 309 6 HET MG C 310 1 HET SO4 C 311 5 HET PEG D 501 7 HET K D 502 1 HET ACT D 503 4 HET ACT D 504 4 HET SO4 D 505 5 HET SO4 D 506 5 HET SO4 D 507 5 HET GOL D 508 12 HETNAM K POTASSIUM ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 K 4(K 1+) FORMUL 6 ACT 9(C2 H3 O2 1-) FORMUL 8 SO4 13(O4 S 2-) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 27 MG MG 2+ FORMUL 29 PEG C4 H10 O3 FORMUL 37 HOH *644(H2 O) HELIX 1 AA1 ASP A 48 SER A 53 1 6 HELIX 2 AA2 VAL A 56 SER A 66 1 11 HELIX 3 AA3 GLY A 67 SER A 75 1 9 HELIX 4 AA4 ASP A 78 GLY A 92 1 15 HELIX 5 AA5 ILE A 107 MET A 118 1 12 HELIX 6 AA6 MET A 118 LEU A 125 1 8 HELIX 7 AA7 VAL A 132 TYR A 143 1 12 HELIX 8 AA8 TYR A 143 GLY A 149 1 7 HELIX 9 AA9 ALA A 159 ALA A 177 1 19 HELIX 10 AB1 SER A 185 LEU A 196 1 12 HELIX 11 AB2 ASP B 48 SER B 53 1 6 HELIX 12 AB3 VAL B 56 SER B 66 1 11 HELIX 13 AB4 GLY B 67 SER B 75 1 9 HELIX 14 AB5 ASP B 78 GLY B 92 1 15 HELIX 15 AB6 ILE B 107 MET B 118 1 12 HELIX 16 AB7 MET B 118 LEU B 125 1 8 HELIX 17 AB8 VAL B 132 TYR B 143 1 12 HELIX 18 AB9 TYR B 143 GLY B 149 1 7 HELIX 19 AC1 ARG B 158 ALA B 177 1 20 HELIX 20 AC2 SER B 185 LEU B 196 1 12 HELIX 21 AC3 ASP C 48 SER C 53 1 6 HELIX 22 AC4 VAL C 56 SER C 66 1 11 HELIX 23 AC5 GLY C 67 SER C 75 1 9 HELIX 24 AC6 ASP C 78 GLY C 92 1 15 HELIX 25 AC7 SER C 106 MET C 118 1 13 HELIX 26 AC8 MET C 118 LEU C 125 1 8 HELIX 27 AC9 VAL C 132 TYR C 143 1 12 HELIX 28 AD1 TYR C 143 GLY C 149 1 7 HELIX 29 AD2 ARG C 158 ALA C 177 1 20 HELIX 30 AD3 SER C 185 LEU C 196 1 12 HELIX 31 AD4 ASP D 48 SER D 53 1 6 HELIX 32 AD5 VAL D 56 SER D 66 1 11 HELIX 33 AD6 GLY D 67 SER D 75 1 9 HELIX 34 AD7 ASP D 78 GLY D 92 1 15 HELIX 35 AD8 SER D 106 MET D 118 1 13 HELIX 36 AD9 MET D 118 LEU D 125 1 8 HELIX 37 AE1 VAL D 132 TYR D 143 1 12 HELIX 38 AE2 TYR D 143 GLY D 149 1 7 HELIX 39 AE3 ARG D 158 ALA D 177 1 20 HELIX 40 AE4 SER D 185 LEU D 196 1 12 SHEET 1 AA1 5 LEU A 41 VAL A 44 0 SHEET 2 AA1 5 LEU A 22 THR A 30 -1 N VAL A 27 O LEU A 41 SHEET 3 AA1 5 LEU A 5 MET A 12 -1 N TRP A 7 O LEU A 28 SHEET 4 AA1 5 LEU A 102 GLY A 104 1 O ALA A 103 N VAL A 6 SHEET 5 AA1 5 MET A 129 ASP A 131 1 O ILE A 130 N LEU A 102 SHEET 1 AA2 5 LEU B 41 VAL B 44 0 SHEET 2 AA2 5 LEU B 22 THR B 30 -1 N VAL B 27 O LEU B 41 SHEET 3 AA2 5 LEU B 5 MET B 12 -1 N TRP B 7 O LEU B 28 SHEET 4 AA2 5 LEU B 102 GLY B 104 1 O ALA B 103 N VAL B 6 SHEET 5 AA2 5 MET B 129 ASP B 131 1 O ILE B 130 N LEU B 102 SHEET 1 AA3 5 LEU C 41 VAL C 44 0 SHEET 2 AA3 5 LEU C 22 THR C 30 -1 N VAL C 27 O LEU C 41 SHEET 3 AA3 5 LEU C 5 MET C 12 -1 N TRP C 7 O LEU C 28 SHEET 4 AA3 5 LEU C 102 GLY C 104 1 O ALA C 103 N VAL C 6 SHEET 5 AA3 5 MET C 129 ASP C 131 1 O ILE C 130 N LEU C 102 SHEET 1 AA4 5 ILE D 36 VAL D 44 0 SHEET 2 AA4 5 LEU D 22 THR D 30 -1 N VAL D 27 O LEU D 41 SHEET 3 AA4 5 LEU D 5 MET D 12 -1 N TRP D 7 O LEU D 28 SHEET 4 AA4 5 LEU D 102 GLY D 104 1 O ALA D 103 N VAL D 6 SHEET 5 AA4 5 MET D 129 ASP D 131 1 O ILE D 130 N LEU D 102 LINK OD1 ASP A 9 K K A 601 1555 1555 3.10 LINK OD2 ASP A 9 K K A 601 1555 1555 3.13 LINK O CYS A 10 K K A 601 1555 1555 3.08 LINK OE1 GLU A 11 K K A 601 1555 1555 3.34 LINK OE2 GLU A 11 K K A 601 1555 1555 3.05 LINK OD2 ASP A 162 K K A 601 1555 1555 3.41 LINK K K A 601 O HOH A 736 1555 1555 3.06 LINK OD1 ASP B 9 K K B 302 1555 1555 3.24 LINK OD2 ASP B 9 K K B 302 1555 1555 3.37 LINK O CYS B 10 K K B 302 1555 1555 3.36 LINK OE1 GLU B 11 K K B 302 1555 1555 3.40 LINK OE2 GLU B 11 K K B 302 1555 1555 3.34 LINK OD2 ASP B 162 K K B 302 1555 1555 3.42 LINK K K B 302 O HOH B 433 1555 1555 2.75 LINK OD1 ASP C 9 K K C 302 1555 1555 3.39 LINK OD2 ASP C 9 K K C 302 1555 1555 3.31 LINK O CYS C 10 K K C 302 1555 1555 3.29 LINK OE1 GLU C 11 K K C 302 1555 1555 3.14 LINK OE2 GLU C 11 K K C 302 1555 1555 3.01 LINK OG SER C 66 MG MG C 310 1555 1555 2.54 LINK O HIS C 157 MG MG C 310 1555 1555 2.75 LINK OD2 ASP C 162 K K C 302 1555 1555 3.35 LINK K K C 302 O HOH C 431 1555 1555 3.18 LINK OD1 ASP D 9 K K D 502 1555 1555 3.17 LINK OD2 ASP D 9 K K D 502 1555 1555 3.05 LINK O CYS D 10 K K D 502 1555 1555 3.24 LINK OE1 GLU D 11 K K D 502 1555 1555 3.25 LINK OE2 GLU D 11 K K D 502 1555 1555 2.90 LINK OD2 ASP D 162 K K D 502 1555 1555 3.16 LINK K K D 502 O HOH D 660 1555 1555 3.27 CISPEP 1 GLN A 181 PRO A 182 0 3.96 CISPEP 2 GLN A 181 PRO A 182 0 4.20 CISPEP 3 GLN B 181 PRO B 182 0 5.57 CISPEP 4 GLN C 181 PRO C 182 0 6.66 CISPEP 5 GLN D 181 PRO D 182 0 6.13 CRYST1 60.250 97.260 146.730 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006815 0.00000