HEADER TOXIN 15-JAN-22 7WMK TITLE PQQ-DEPENDENT ALCOHOL DEHYDROGENASE COMPLEXED WITH PQQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PQQ-DEPENDENT ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEVOSIA ALBOGILVA; SOURCE 3 ORGANISM_TAXID: 429726; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, PQQ, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,H.YANG,F.LV REVDAT 2 29-NOV-23 7WMK 1 REMARK REVDAT 1 07-SEP-22 7WMK 0 JRNL AUTH H.YANG,R.YAN,Y.LI,Z.LU,X.BIE,H.ZHAO,F.LU,M.CHEN JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A QUINONE-DEPENDENT JRNL TITL 2 DEHYDROGENASE CAPABLE OF DEOXYNIVALENOL DETOXIFICATION. JRNL REF J.AGRIC.FOOD CHEM. V. 70 6764 2022 JRNL REFN ESSN 1520-5118 JRNL PMID 35613468 JRNL DOI 10.1021/ACS.JAFC.2C01083 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 93081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1510 - 3.5423 1.00 6602 145 0.1463 0.1477 REMARK 3 2 3.5423 - 2.8118 1.00 6543 143 0.1396 0.1353 REMARK 3 3 2.8118 - 2.4564 1.00 6529 144 0.1372 0.1400 REMARK 3 4 2.4564 - 2.2318 1.00 6476 142 0.1281 0.1197 REMARK 3 5 2.2318 - 2.0719 1.00 6489 143 0.1224 0.1266 REMARK 3 6 2.0719 - 1.9497 1.00 6547 143 0.1221 0.1250 REMARK 3 7 1.9497 - 1.8521 1.00 6475 142 0.1251 0.1389 REMARK 3 8 1.8521 - 1.7714 1.00 6506 144 0.1255 0.1383 REMARK 3 9 1.7714 - 1.7032 1.00 6485 141 0.1232 0.1247 REMARK 3 10 1.7032 - 1.6445 1.00 6526 145 0.1301 0.1343 REMARK 3 11 1.6445 - 1.5930 1.00 6438 140 0.1523 0.1534 REMARK 3 12 1.5930 - 1.5475 1.00 6481 143 0.1618 0.1579 REMARK 3 13 1.5475 - 1.5068 1.00 6497 143 0.1906 0.2263 REMARK 3 14 1.5068 - 1.4700 1.00 6487 142 0.2288 0.2202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 47.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7WMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM SODIUM ACETATE, 100MM BIS-TRIS REMARK 280 (PH 7.5), 150MM NACL, 15% PEG 3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.98650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.98650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 822 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LYS A 435 REMARK 465 ALA A 436 REMARK 465 ARG A 437 REMARK 465 THR A 438 REMARK 465 THR A 439 REMARK 465 GLU A 440 REMARK 465 ALA A 441 REMARK 465 THR A 442 REMARK 465 PRO A 443 REMARK 465 ALA A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 TYR A 447 REMARK 465 ASN A 448 REMARK 465 THR A 449 REMARK 465 ASP A 450 REMARK 465 SER A 451 REMARK 465 THR A 452 REMARK 465 ALA A 578 REMARK 465 LYS A 579 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 181 CG OD1 OD2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 137 NA NA A 604 1.57 REMARK 500 O HOH A 861 O HOH A 996 2.07 REMARK 500 OE1 GLU A 480 O HOH A 701 2.16 REMARK 500 OE2 GLU A 306 O HOH A 702 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 197 CB - CA - C ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 -78.40 -111.02 REMARK 500 ILE A 107 -64.29 -96.88 REMARK 500 ASN A 145 37.92 73.60 REMARK 500 VAL A 167 -106.65 59.44 REMARK 500 CYS A 197 -157.06 -131.19 REMARK 500 MET A 237 -5.11 79.69 REMARK 500 ALA A 240 75.03 -153.71 REMARK 500 THR A 258 -163.27 -115.37 REMARK 500 LEU A 298 88.98 -154.32 REMARK 500 ASN A 319 56.04 -152.97 REMARK 500 THR A 369 -87.01 -114.22 REMARK 500 LYS A 393 -82.72 -124.65 REMARK 500 PRO A 403 -110.19 -86.43 REMARK 500 ASP A 410 -157.32 -142.40 REMARK 500 ASP A 503 32.90 -97.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 136 OD1 REMARK 620 2 ASP A 136 OD2 51.8 REMARK 620 3 GLU A 205 OE2 144.9 157.2 REMARK 620 4 ACT A 603 O 126.6 76.4 82.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 304 OD1 REMARK 620 2 GLU A 306 OE1 86.6 REMARK 620 3 PQQ A 601 O5 84.4 105.8 REMARK 620 4 PQQ A 601 O7A 134.5 67.6 137.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 607 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 398 OD1 REMARK 620 2 ASP A 398 OD2 55.0 REMARK 620 3 ASN A 400 OD1 93.6 87.0 REMARK 620 4 ASP A 433 OD1 91.7 144.9 84.3 REMARK 620 N 1 2 3 DBREF 7WMK A 1 579 PDB 7WMK 7WMK 1 579 SEQRES 1 A 579 MET HIS ALA ASP GLY ALA ALA ALA GLU THR ALA ALA PRO SEQRES 2 A 579 GLY GLN SER ALA ILE GLU ASN PHE GLN PRO VAL THR ALA SEQRES 3 A 579 GLU ASP LEU ALA GLY GLY ASN ALA ALA ASN TRP PRO ILE SEQRES 4 A 579 LEU ARG GLY ASN TYR GLN GLY TRP GLY TYR THR GLN LEU SEQRES 5 A 579 ASP GLN ILE ASN LYS ASP ASN VAL GLY GLN LEU GLN LEU SEQRES 6 A 579 ALA TRP ALA ARG THR MET GLU PRO GLY SER ASN GLU GLY SEQRES 7 A 579 SER ALA ILE ALA TYR ASN GLY VAL VAL PHE LEU GLY ASN SEQRES 8 A 579 ALA ASN ASP VAL VAL GLN ALA ILE ASP GLY LYS THR GLY SEQRES 9 A 579 ASN LEU ILE TRP GLU TYR ARG ARG LYS LEU PRO PRO ALA SEQRES 10 A 579 SER LYS PHE ILE ASN SER LEU GLY ALA ALA LYS ARG SER SEQRES 11 A 579 ILE ALA LEU PHE GLY ASP LYS VAL TYR PHE VAL SER TRP SEQRES 12 A 579 ASP ASN PHE VAL VAL ALA LEU ASP ALA LYS THR GLY LYS SEQRES 13 A 579 LEU ALA TRP GLU THR ASN ARG GLY GLN GLY VAL GLU GLU SEQRES 14 A 579 GLY VAL SER ASN SER SER GLY PRO ILE VAL VAL ASP GLY SEQRES 15 A 579 VAL VAL ILE ALA GLY SER THR CYS GLN TYR SER GLY PHE SEQRES 16 A 579 GLY CYS TYR VAL THR GLY THR ASP ALA GLU SER GLY GLU SEQRES 17 A 579 GLU LEU TRP ARG ASN THR PHE ILE PRO ARG PRO GLY GLU SEQRES 18 A 579 GLU GLY ASP ASP THR TRP GLY GLY ALA PRO TYR GLU ASN SEQRES 19 A 579 ARG TRP MET THR GLY ALA TRP GLY GLN ILE THR TYR ASP SEQRES 20 A 579 PRO GLU LEU ASP LEU VAL TYR TYR GLY SER THR GLY ALA SEQRES 21 A 579 GLY PRO ALA SER GLU VAL GLN ARG GLY THR GLU GLY GLY SEQRES 22 A 579 THR LEU ALA GLY THR ASN THR ARG PHE ALA VAL LYS PRO SEQRES 23 A 579 LYS THR GLY GLU VAL VAL TRP LYS HIS GLN THR LEU PRO SEQRES 24 A 579 ARG ASP ASN TRP ASP SER GLU CYS THR PHE GLU MET MET SEQRES 25 A 579 VAL VAL SER THR THR VAL ASN PRO ASP ALA GLY ALA ASP SEQRES 26 A 579 GLY MET MET SER VAL GLY ALA ASN VAL PRO ARG GLY GLU SEQRES 27 A 579 THR ARG LYS VAL LEU THR GLY VAL PRO CYS LYS THR GLY SEQRES 28 A 579 VAL ALA TRP GLN PHE ASP ALA GLU THR GLY ASP TYR PHE SEQRES 29 A 579 TRP SER LYS ALA THR VAL GLU GLN ASN SER ILE ALA SER SEQRES 30 A 579 ILE ASP ASP LYS GLY LEU VAL THR VAL ASN GLU ASP MET SEQRES 31 A 579 ILE LEU LYS GLU PRO GLY LYS ASP TYR ASN TYR CYS PRO SEQRES 32 A 579 THR PHE LEU GLY GLY ARG ASP TRP PRO SER ALA GLY TYR SEQRES 33 A 579 LEU PRO LYS SER ASN LEU TYR VAL ILE PRO LEU SER ASN SEQRES 34 A 579 ALA CYS TYR ASP LEU LYS ALA ARG THR THR GLU ALA THR SEQRES 35 A 579 PRO ALA ASP VAL TYR ASN THR ASP SER THR VAL LYS LEU SEQRES 36 A 579 ALA PRO GLY LYS THR ASN MET GLY ARG VAL ASP ALA ILE SEQRES 37 A 579 ASP VAL ALA THR GLY ALA THR LYS TRP SER PHE GLU THR SEQRES 38 A 579 GLU ALA ALA LEU TYR ASP PRO VAL MET THR THR ALA GLY SEQRES 39 A 579 ASP LEU VAL PHE VAL GLY SER THR ASP ARG MET PHE ARG SEQRES 40 A 579 ALA LEU ASP ALA GLU THR GLY LYS GLU VAL TRP SER THR SEQRES 41 A 579 ARG LEU PRO GLY ALA ILE SER GLY TYR THR THR SER TYR SEQRES 42 A 579 SER ILE ASP GLY ARG GLN TYR VAL ALA VAL VAL ALA GLY SEQRES 43 A 579 GLY SER LEU GLY THR GLY PHE PHE LYS ALA ALA VAL PRO SEQRES 44 A 579 GLY VAL ASP ALA VAL GLN GLY GLY ASN GLY ILE TYR VAL SEQRES 45 A 579 PHE ALA LEU PRO GLU ALA LYS HET PQQ A 601 27 HET ACT A 602 7 HET ACT A 603 7 HET NA A 604 1 HET EPE A 605 32 HET CA A 606 1 HET CA A 607 1 HET CA A 608 1 HET CL A 609 1 HET CL A 610 1 HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN EPE HEPES FORMUL 2 PQQ C14 H6 N2 O8 FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 NA NA 1+ FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 CA 3(CA 2+) FORMUL 10 CL 2(CL 1-) FORMUL 12 HOH *315(H2 O) HELIX 1 AA1 THR A 25 ALA A 30 1 6 HELIX 2 AA2 ASN A 59 LEU A 63 5 5 HELIX 3 AA3 PRO A 116 PHE A 120 5 5 HELIX 4 AA4 ASN A 122 ALA A 127 5 6 HELIX 5 AA5 GLY A 166 GLY A 170 5 5 HELIX 6 AA6 GLY A 223 TRP A 227 5 5 HELIX 7 AA7 PRO A 231 ARG A 235 5 5 HELIX 8 AA8 SER A 264 GLY A 269 1 6 HELIX 9 AA9 GLU A 388 ILE A 391 5 4 SHEET 1 AA1 5 TYR A 49 THR A 50 0 SHEET 2 AA1 5 VAL A 489 THR A 492 1 O THR A 491 N THR A 50 SHEET 3 AA1 5 LEU A 496 GLY A 500 -1 O PHE A 498 N MET A 490 SHEET 4 AA1 5 MET A 505 ASP A 510 -1 O LEU A 509 N VAL A 497 SHEET 5 AA1 5 GLU A 516 ARG A 521 -1 O VAL A 517 N ALA A 508 SHEET 1 AA2 4 GLN A 64 THR A 70 0 SHEET 2 AA2 4 GLY A 569 ALA A 574 -1 O VAL A 572 N TRP A 67 SHEET 3 AA2 4 ARG A 538 ALA A 545 -1 N VAL A 541 O PHE A 573 SHEET 4 AA2 4 THR A 530 ILE A 535 -1 N TYR A 533 O TYR A 540 SHEET 1 AA3 4 ALA A 80 TYR A 83 0 SHEET 2 AA3 4 VAL A 86 GLY A 90 -1 O PHE A 88 N ILE A 81 SHEET 3 AA3 4 VAL A 95 ASP A 100 -1 O ILE A 99 N VAL A 87 SHEET 4 AA3 4 LEU A 106 ARG A 111 -1 O TYR A 110 N VAL A 96 SHEET 1 AA4 4 ALA A 132 PHE A 134 0 SHEET 2 AA4 4 LYS A 137 VAL A 141 -1 O TYR A 139 N ALA A 132 SHEET 3 AA4 4 PHE A 146 ASP A 151 -1 O VAL A 148 N PHE A 140 SHEET 4 AA4 4 LEU A 157 ASN A 162 -1 O ALA A 158 N ALA A 149 SHEET 1 AA5 4 ILE A 178 VAL A 180 0 SHEET 2 AA5 4 VAL A 183 ALA A 186 -1 O ILE A 185 N ILE A 178 SHEET 3 AA5 4 TYR A 198 ASP A 203 -1 O THR A 202 N VAL A 184 SHEET 4 AA5 4 GLU A 209 THR A 214 -1 O LEU A 210 N GLY A 201 SHEET 1 AA6 4 THR A 245 ASP A 247 0 SHEET 2 AA6 4 LEU A 252 GLY A 256 -1 O TYR A 254 N THR A 245 SHEET 3 AA6 4 THR A 280 VAL A 284 -1 O VAL A 284 N VAL A 253 SHEET 4 AA6 4 VAL A 291 GLN A 296 -1 O HIS A 295 N ARG A 281 SHEET 1 AA7 5 MET A 312 THR A 317 0 SHEET 2 AA7 5 THR A 339 GLY A 345 -1 O VAL A 342 N VAL A 314 SHEET 3 AA7 5 ALA A 353 ASP A 357 -1 O TRP A 354 N GLY A 345 SHEET 4 AA7 5 TYR A 363 LYS A 367 -1 O LYS A 367 N ALA A 353 SHEET 5 AA7 5 MET A 327 VAL A 330 -1 N MET A 328 O SER A 366 SHEET 1 AA8 2 ILE A 375 ILE A 378 0 SHEET 2 AA8 2 VAL A 384 VAL A 386 -1 O THR A 385 N SER A 377 SHEET 1 AA9 3 ASN A 400 TYR A 401 0 SHEET 2 AA9 3 ALA A 430 ASP A 433 -1 O TYR A 432 N TYR A 401 SHEET 3 AA9 3 LYS A 454 LEU A 455 -1 O LYS A 454 N CYS A 431 SHEET 1 AB1 4 GLY A 415 LEU A 417 0 SHEET 2 AB1 4 LEU A 422 SER A 428 -1 O VAL A 424 N GLY A 415 SHEET 3 AB1 4 GLY A 463 ASP A 469 -1 O ARG A 464 N LEU A 427 SHEET 4 AB1 4 THR A 475 THR A 481 -1 O LYS A 476 N ALA A 467 SSBOND 1 CYS A 190 CYS A 197 1555 1555 2.07 SSBOND 2 CYS A 307 CYS A 348 1555 1555 2.04 SSBOND 3 CYS A 402 CYS A 431 1555 1555 2.09 LINK OD1 ASP A 136 NA NA A 604 1555 1555 2.33 LINK OD2 ASP A 136 NA NA A 604 1555 1555 2.67 LINK OE2 GLU A 205 NA NA A 604 1555 1555 2.49 LINK OD1 ASP A 304 CA CA A 606 1555 1555 2.76 LINK OE1 GLU A 306 CA CA A 606 1555 1555 2.76 LINK OD1 ASP A 398 CA CA A 607 1555 1554 2.37 LINK OD2 ASP A 398 CA CA A 607 1555 1554 2.42 LINK OD1 ASN A 400 CA CA A 607 1555 1554 2.12 LINK OD1 ASP A 433 CA CA A 607 1555 1554 2.11 LINK O5 PQQ A 601 CA CA A 606 1555 1555 2.34 LINK O7A PQQ A 601 CA CA A 606 1555 1555 2.31 LINK O ACT A 603 NA NA A 604 1555 1555 2.32 LINK CA CA A 608 O HOH A 990 1555 1555 2.43 CISPEP 1 GLY A 261 PRO A 262 0 -11.77 CISPEP 2 CYS A 402 PRO A 403 0 2.24 CISPEP 3 GLY A 407 GLY A 408 0 -2.40 CRYST1 109.973 91.190 57.332 90.00 103.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009093 0.000000 0.002229 0.00000 SCALE2 0.000000 0.010966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017959 0.00000