HEADER OXIDOREDUCTASE 18-JAN-22 7WNK TITLE CRYSTAL STRUCTURE OF A MUTANT STAPHYLOCOCCUS EQUORUM MANGANESE TITLE 2 SUPEROXIDE DISMUTASE K38R AND A121E COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS EQUORUM; SOURCE 3 ORGANISM_TAXID: 246432; SOURCE 4 GENE: AST02_02815; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS414 KEYWDS SUPEROXIDE DISMUTASE, STAPHYLOCOCCUS EQUORUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.RETNONINGRUM,H.YOSHIDA,A.A.ARTARINI,W.T.ISMAYA REVDAT 5 29-NOV-23 7WNK 1 REMARK REVDAT 4 12-JUL-23 7WNK 1 JRNL REVDAT 3 08-FEB-23 7WNK 1 JRNL REVDAT 2 01-FEB-23 7WNK 1 JRNL REVDAT 1 25-JAN-23 7WNK 0 JRNL AUTH D.S.RETNONINGRUM,H.YOSHIDA,I.PAJATIWI,R.MULIADI,R.A.UTAMI, JRNL AUTH 2 A.ARTARINI,W.T.ISMAYA JRNL TITL INTRODUCING INTERMOLECULAR INTERACTION TO STRENGTHEN THE JRNL TITL 2 STABILITY OF MNSOD DIMER. JRNL REF APPL.BIOCHEM.BIOTECHNOL. V. 195 4537 2023 JRNL REFN ISSN 0273-2289 JRNL PMID 36701098 JRNL DOI 10.1007/S12010-023-04347-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.S.RETNONINGRUM,H.YOSHIDA,S.ARUMSARI,S.KAMITORI,W.T.ISMAYA REMARK 1 TITL THE FIRST CRYSTAL STRUCTURE OF MANGANESE SUPEROXIDE REMARK 1 TITL 2 DISMUTASE FROM THE GENUS STAPHYLOCOCCUS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 74 135 2018 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 29497016 REMARK 1 DOI 10.1107/S2053230X18001036 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 186025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 9581 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 660 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6468 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 875 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -2.93000 REMARK 3 B33 (A**2) : 3.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6711 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5845 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9140 ; 1.288 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13638 ; 1.457 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 6.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 389 ;35.543 ;24.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1074 ;12.078 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 835 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7581 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1369 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300027066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 195703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.00200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5X2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FLUORIDE, SODIUM BROMIDE, REMARK 280 SODIUM IODIDE, IMIDAZOLE, MES, PEG MME 500, PEG 20000, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.88250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.58700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.88250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.58700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 MET B 1 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 MET C 1 REMARK 465 HIS C 200 REMARK 465 HIS C 201 REMARK 465 HIS C 202 REMARK 465 HIS C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 MET D 1 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 145 -120.81 57.17 REMARK 500 TYR A 167 -7.43 -142.53 REMARK 500 GLN A 172 -126.62 43.24 REMARK 500 ASN B 145 -123.32 57.54 REMARK 500 TYR B 167 -8.15 -142.86 REMARK 500 GLN B 172 -128.12 45.12 REMARK 500 ASN C 145 -120.44 56.31 REMARK 500 TYR C 167 -6.22 -143.55 REMARK 500 GLN C 172 -125.90 44.15 REMARK 500 ASN D 145 -121.59 58.19 REMARK 500 TYR D 167 -5.67 -141.77 REMARK 500 GLN D 172 -124.33 43.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 81 NE2 88.2 REMARK 620 3 ASP A 161 OD2 84.9 106.6 REMARK 620 4 HIS A 165 NE2 90.3 139.5 113.6 REMARK 620 5 HOH A 520 O 177.2 92.8 92.3 90.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 81 NE2 90.4 REMARK 620 3 ASP B 161 OD2 84.1 108.7 REMARK 620 4 HIS B 165 NE2 91.4 136.7 114.6 REMARK 620 5 HOH B 627 O 176.6 90.5 92.5 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 27 NE2 REMARK 620 2 HIS C 81 NE2 88.2 REMARK 620 3 ASP C 161 OD2 87.9 109.0 REMARK 620 4 HIS C 165 NE2 91.1 135.4 115.6 REMARK 620 5 HOH C 509 O 178.1 92.6 90.2 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 27 NE2 REMARK 620 2 HIS D 81 NE2 90.6 REMARK 620 3 ASP D 161 OD2 86.2 108.6 REMARK 620 4 HIS D 165 NE2 91.9 135.6 115.8 REMARK 620 5 HOH D 497 O 177.4 90.6 91.2 88.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X2J RELATED DB: PDB REMARK 900 WILD TYPE OF THE ENTRY PROTEIN REMARK 900 RELATED ID: 6M30 RELATED DB: PDB REMARK 900 A MUTANT (N73F) OF THE SAME PROTEIN REMARK 900 RELATED ID: 7DDW RELATED DB: PDB REMARK 900 A MUTANT (S126C) OF THE SAME PROTEIN REMARK 900 RELATED ID: 7W6W RELATED DB: PDB REMARK 900 A MUTANT (L169W) OF THE SAME PROTEIN REMARK 900 RELATED ID: 7WNL RELATED DB: PDB REMARK 900 A MUTANT (K38R AND A121Y) OF THE SAME PROTEIN DBREF1 7WNK A 1 199 UNP A0A1E5TT85_9STAP DBREF2 7WNK A A0A1E5TT85 1 199 DBREF1 7WNK B 1 199 UNP A0A1E5TT85_9STAP DBREF2 7WNK B A0A1E5TT85 1 199 DBREF1 7WNK C 1 199 UNP A0A1E5TT85_9STAP DBREF2 7WNK C A0A1E5TT85 1 199 DBREF1 7WNK D 1 199 UNP A0A1E5TT85_9STAP DBREF2 7WNK D A0A1E5TT85 1 199 SEQADV 7WNK ARG A 13 UNP A0A1E5TT8 ASP 13 ENGINEERED MUTATION SEQADV 7WNK ARG A 38 UNP A0A1E5TT8 LYS 38 ENGINEERED MUTATION SEQADV 7WNK GLU A 121 UNP A0A1E5TT8 ALA 121 ENGINEERED MUTATION SEQADV 7WNK HIS A 200 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS A 201 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS A 202 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS A 203 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS A 204 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS A 205 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK ARG B 13 UNP A0A1E5TT8 ASP 13 ENGINEERED MUTATION SEQADV 7WNK ARG B 38 UNP A0A1E5TT8 LYS 38 ENGINEERED MUTATION SEQADV 7WNK GLU B 121 UNP A0A1E5TT8 ALA 121 ENGINEERED MUTATION SEQADV 7WNK HIS B 200 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS B 201 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS B 202 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS B 203 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS B 204 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS B 205 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK ARG C 13 UNP A0A1E5TT8 ASP 13 ENGINEERED MUTATION SEQADV 7WNK ARG C 38 UNP A0A1E5TT8 LYS 38 ENGINEERED MUTATION SEQADV 7WNK GLU C 121 UNP A0A1E5TT8 ALA 121 ENGINEERED MUTATION SEQADV 7WNK HIS C 200 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS C 201 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS C 202 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS C 203 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS C 204 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS C 205 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK ARG D 13 UNP A0A1E5TT8 ASP 13 ENGINEERED MUTATION SEQADV 7WNK ARG D 38 UNP A0A1E5TT8 LYS 38 ENGINEERED MUTATION SEQADV 7WNK GLU D 121 UNP A0A1E5TT8 ALA 121 ENGINEERED MUTATION SEQADV 7WNK HIS D 200 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS D 201 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS D 202 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS D 203 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS D 204 UNP A0A1E5TT8 EXPRESSION TAG SEQADV 7WNK HIS D 205 UNP A0A1E5TT8 EXPRESSION TAG SEQRES 1 A 205 MET ALA PHE GLU LEU PRO ASN LEU PRO TYR GLY PHE ARG SEQRES 2 A 205 ALA LEU GLU PRO HIS ILE ASP GLN GLN THR MET GLU ILE SEQRES 3 A 205 HIS HIS ASP LYS HIS HIS ASN THR TYR VAL THR ARG LEU SEQRES 4 A 205 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 A 205 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO GLU SEQRES 6 A 205 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 A 205 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU THR PRO ASN SEQRES 8 A 205 SER GLU GLU LYS GLY THR VAL VAL ASP LYS ILE LYS GLU SEQRES 9 A 205 GLN TRP GLY SER LEU ASP ALA PHE LYS GLU GLU PHE ALA SEQRES 10 A 205 ASN GLN ALA GLU ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 A 205 LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE VAL THR THR SEQRES 12 A 205 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 A 205 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 A 205 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE SER ALA PHE SEQRES 15 A 205 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 A 205 ASN ALA ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 205 MET ALA PHE GLU LEU PRO ASN LEU PRO TYR GLY PHE ARG SEQRES 2 B 205 ALA LEU GLU PRO HIS ILE ASP GLN GLN THR MET GLU ILE SEQRES 3 B 205 HIS HIS ASP LYS HIS HIS ASN THR TYR VAL THR ARG LEU SEQRES 4 B 205 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 B 205 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO GLU SEQRES 6 B 205 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 B 205 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU THR PRO ASN SEQRES 8 B 205 SER GLU GLU LYS GLY THR VAL VAL ASP LYS ILE LYS GLU SEQRES 9 B 205 GLN TRP GLY SER LEU ASP ALA PHE LYS GLU GLU PHE ALA SEQRES 10 B 205 ASN GLN ALA GLU ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 B 205 LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE VAL THR THR SEQRES 12 B 205 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 B 205 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 B 205 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE SER ALA PHE SEQRES 15 B 205 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 B 205 ASN ALA ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 205 MET ALA PHE GLU LEU PRO ASN LEU PRO TYR GLY PHE ARG SEQRES 2 C 205 ALA LEU GLU PRO HIS ILE ASP GLN GLN THR MET GLU ILE SEQRES 3 C 205 HIS HIS ASP LYS HIS HIS ASN THR TYR VAL THR ARG LEU SEQRES 4 C 205 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 C 205 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO GLU SEQRES 6 C 205 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 C 205 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU THR PRO ASN SEQRES 8 C 205 SER GLU GLU LYS GLY THR VAL VAL ASP LYS ILE LYS GLU SEQRES 9 C 205 GLN TRP GLY SER LEU ASP ALA PHE LYS GLU GLU PHE ALA SEQRES 10 C 205 ASN GLN ALA GLU ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 C 205 LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE VAL THR THR SEQRES 12 C 205 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 C 205 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 C 205 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE SER ALA PHE SEQRES 15 C 205 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 C 205 ASN ALA ALA LYS HIS HIS HIS HIS HIS HIS SEQRES 1 D 205 MET ALA PHE GLU LEU PRO ASN LEU PRO TYR GLY PHE ARG SEQRES 2 D 205 ALA LEU GLU PRO HIS ILE ASP GLN GLN THR MET GLU ILE SEQRES 3 D 205 HIS HIS ASP LYS HIS HIS ASN THR TYR VAL THR ARG LEU SEQRES 4 D 205 ASN ALA ALA VAL GLU GLY THR ASP LEU GLU SER LYS SER SEQRES 5 D 205 ILE GLU GLU ILE VAL ALA ASN LEU ASP SER VAL PRO GLU SEQRES 6 D 205 ASN ILE GLN THR ALA VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 D 205 LEU ASN HIS SER LEU PHE TRP GLU LEU LEU THR PRO ASN SEQRES 8 D 205 SER GLU GLU LYS GLY THR VAL VAL ASP LYS ILE LYS GLU SEQRES 9 D 205 GLN TRP GLY SER LEU ASP ALA PHE LYS GLU GLU PHE ALA SEQRES 10 D 205 ASN GLN ALA GLU ALA ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 D 205 LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE VAL THR THR SEQRES 12 D 205 PRO ASN GLN ASP ASN PRO LEU THR GLU GLY LYS THR PRO SEQRES 13 D 205 ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA TYR TYR LEU SEQRES 14 D 205 LYS TYR GLN ASN LYS ARG PRO ASP TYR ILE SER ALA PHE SEQRES 15 D 205 TRP ASN VAL VAL ASN TRP GLU LYS VAL ASP GLU LEU TYR SEQRES 16 D 205 ASN ALA ALA LYS HIS HIS HIS HIS HIS HIS HET MN A 301 1 HET PEG A 302 7 HET AZI B 401 3 HET MN B 402 1 HET AZI B 403 3 HET AZI B 404 3 HET MN C 301 1 HET AZI C 302 3 HET MN D 301 1 HET AZI D 302 3 HET BR D 303 1 HET PEG D 304 7 HETNAM MN MANGANESE (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AZI AZIDE ION HETNAM BR BROMIDE ION FORMUL 5 MN 4(MN 2+) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 7 AZI 5(N3 1-) FORMUL 15 BR BR 1- FORMUL 17 HOH *875(H2 O) HELIX 1 AA1 ASP A 20 LYS A 30 1 11 HELIX 2 AA2 LYS A 30 GLU A 44 1 15 HELIX 3 AA3 SER A 52 ASN A 59 1 8 HELIX 4 AA4 LEU A 60 VAL A 63 5 4 HELIX 5 AA5 PRO A 64 LEU A 87 1 24 HELIX 6 AA6 GLY A 96 GLY A 107 1 12 HELIX 7 AA7 SER A 108 ARG A 123 1 16 HELIX 8 AA8 ASN A 148 GLY A 153 5 6 HELIX 9 AA9 TRP A 163 ALA A 166 5 4 HELIX 10 AB1 TYR A 167 GLN A 172 1 6 HELIX 11 AB2 LYS A 174 TRP A 183 1 10 HELIX 12 AB3 ASN A 184 VAL A 186 5 3 HELIX 13 AB4 ASN A 187 ALA A 197 1 11 HELIX 14 AB5 ASP B 20 LYS B 30 1 11 HELIX 15 AB6 LYS B 30 GLU B 44 1 15 HELIX 16 AB7 THR B 46 LYS B 51 5 6 HELIX 17 AB8 SER B 52 ASN B 59 1 8 HELIX 18 AB9 LEU B 60 VAL B 63 5 4 HELIX 19 AC1 PRO B 64 LEU B 87 1 24 HELIX 20 AC2 GLY B 96 GLY B 107 1 12 HELIX 21 AC3 SER B 108 ARG B 123 1 16 HELIX 22 AC4 ASN B 148 GLY B 153 5 6 HELIX 23 AC5 TRP B 163 ALA B 166 5 4 HELIX 24 AC6 TYR B 167 GLN B 172 1 6 HELIX 25 AC7 LYS B 174 TRP B 183 1 10 HELIX 26 AC8 ASN B 184 VAL B 186 5 3 HELIX 27 AC9 ASN B 187 HIS B 200 1 14 HELIX 28 AD1 ASP C 20 LYS C 30 1 11 HELIX 29 AD2 LYS C 30 GLU C 44 1 15 HELIX 30 AD3 THR C 46 LYS C 51 5 6 HELIX 31 AD4 SER C 52 ASN C 59 1 8 HELIX 32 AD5 LEU C 60 VAL C 63 5 4 HELIX 33 AD6 PRO C 64 LEU C 87 1 24 HELIX 34 AD7 GLY C 96 GLY C 107 1 12 HELIX 35 AD8 SER C 108 ARG C 123 1 16 HELIX 36 AD9 ASN C 148 GLY C 153 5 6 HELIX 37 AE1 TRP C 163 ALA C 166 5 4 HELIX 38 AE2 TYR C 167 GLN C 172 1 6 HELIX 39 AE3 LYS C 174 TRP C 183 1 10 HELIX 40 AE4 ASN C 184 VAL C 186 5 3 HELIX 41 AE5 ASN C 187 ALA C 197 1 11 HELIX 42 AE6 ASP D 20 LYS D 30 1 11 HELIX 43 AE7 LYS D 30 GLU D 44 1 15 HELIX 44 AE8 THR D 46 LYS D 51 5 6 HELIX 45 AE9 SER D 52 ASN D 59 1 8 HELIX 46 AF1 LEU D 60 VAL D 63 5 4 HELIX 47 AF2 PRO D 64 ASN D 66 5 3 HELIX 48 AF3 ILE D 67 LEU D 87 1 21 HELIX 49 AF4 GLY D 96 GLY D 107 1 12 HELIX 50 AF5 SER D 108 ARG D 123 1 16 HELIX 51 AF6 ASN D 148 GLY D 153 5 6 HELIX 52 AF7 TRP D 163 ALA D 166 5 4 HELIX 53 AF8 TYR D 167 GLN D 172 1 6 HELIX 54 AF9 LYS D 174 TRP D 183 1 10 HELIX 55 AG1 ASN D 184 VAL D 186 5 3 HELIX 56 AG2 ASN D 187 LYS D 199 1 13 SHEET 1 AA1 3 LYS A 137 PRO A 144 0 SHEET 2 AA1 3 GLY A 127 ASN A 134 -1 N TRP A 130 O VAL A 141 SHEET 3 AA1 3 THR A 155 ASP A 161 -1 O ILE A 157 N LEU A 131 SHEET 1 AA2 3 LYS B 137 PRO B 144 0 SHEET 2 AA2 3 GLY B 127 ASN B 134 -1 N TRP B 130 O VAL B 141 SHEET 3 AA2 3 THR B 155 ASP B 161 -1 O ILE B 157 N LEU B 131 SHEET 1 AA3 3 LYS C 137 PRO C 144 0 SHEET 2 AA3 3 GLY C 127 ASN C 134 -1 N ASN C 134 O LYS C 137 SHEET 3 AA3 3 THR C 155 ASP C 161 -1 O ILE C 157 N LEU C 131 SHEET 1 AA4 3 LYS D 137 PRO D 144 0 SHEET 2 AA4 3 GLY D 127 ASN D 134 -1 N TRP D 130 O VAL D 141 SHEET 3 AA4 3 THR D 155 ASP D 161 -1 O ILE D 157 N LEU D 131 LINK NE2 HIS A 27 MN MN A 301 1555 1555 2.22 LINK NE2 HIS A 81 MN MN A 301 1555 1555 2.14 LINK OD2 ASP A 161 MN MN A 301 1555 1555 2.00 LINK NE2 HIS A 165 MN MN A 301 1555 1555 2.16 LINK MN MN A 301 O HOH A 520 1555 1555 2.02 LINK NE2 HIS B 27 MN MN B 402 1555 1555 2.16 LINK NE2 HIS B 81 MN MN B 402 1555 1555 2.14 LINK OD2 ASP B 161 MN MN B 402 1555 1555 1.96 LINK NE2 HIS B 165 MN MN B 402 1555 1555 2.13 LINK MN MN B 402 O HOH B 627 1555 1555 2.12 LINK NE2 HIS C 27 MN MN C 301 1555 1555 2.16 LINK NE2 HIS C 81 MN MN C 301 1555 1555 2.14 LINK OD2 ASP C 161 MN MN C 301 1555 1555 1.96 LINK NE2 HIS C 165 MN MN C 301 1555 1555 2.15 LINK MN MN C 301 O HOH C 509 1555 1555 2.16 LINK NE2 HIS D 27 MN MN D 301 1555 1555 2.17 LINK NE2 HIS D 81 MN MN D 301 1555 1555 2.12 LINK OD2 ASP D 161 MN MN D 301 1555 1555 1.94 LINK NE2 HIS D 165 MN MN D 301 1555 1555 2.14 LINK MN MN D 301 O HOH D 497 1555 1555 2.22 CISPEP 1 GLU A 16 PRO A 17 0 -2.49 CISPEP 2 GLU B 16 PRO B 17 0 -4.75 CISPEP 3 GLU C 16 PRO C 17 0 1.63 CISPEP 4 GLU D 16 PRO D 17 0 -4.42 CRYST1 73.765 113.174 119.908 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008340 0.00000