HEADER NUCLEAR PROTEIN 19-JAN-22 7WNV TITLE CRYSTAL STRUCTURE OF MUTANT ESTROGEN RECEPTOR ALPHA Y537S IN COMPLEX TITLE 2 WITH CO9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 5 GROUP A MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COVALENT INHIBITOR TRANSCRIPTION FACTOR ONCOGENE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIAO,Y.LV REVDAT 3 07-FEB-24 7WNV 1 JRNL REVDAT 2 29-NOV-23 7WNV 1 REMARK REVDAT 1 25-JAN-23 7WNV 0 JRNL AUTH C.BAI,Y.LV,S.XIONG,S.WU,L.QI,S.REN,M.ZHU,H.DONG,H.SHEN,Z.LI, JRNL AUTH 2 Y.ZHU,H.YE,H.HAO,Y.XIAO,H.XIANG,G.LUO JRNL TITL X-RAY CRYSTALLOGRAPHY STUDY AND OPTIMIZATION OF NOVEL JRNL TITL 2 BENZOTHIOPHENE ANALOGS AS POTENT SELECTIVE ESTROGEN RECEPTOR JRNL TITL 3 COVALENT ANTAGONISTS (SERCAS) WITH IMPROVED POTENCY AND JRNL TITL 4 SAFETY PROFILES. JRNL REF BIOORG.CHEM. V. 141 06919 2023 JRNL REFN ISSN 0045-2068 JRNL PMID 37871388 JRNL DOI 10.1016/J.BIOORG.2023.106919 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 41407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6700 - 5.2400 0.94 3251 142 0.1886 0.2052 REMARK 3 2 5.2300 - 4.1700 0.96 3282 141 0.1772 0.1805 REMARK 3 3 4.1700 - 3.6500 0.96 3343 134 0.1738 0.1940 REMARK 3 4 3.6500 - 3.3100 0.95 3243 144 0.2004 0.2255 REMARK 3 5 3.3100 - 3.0800 0.97 3367 135 0.2225 0.2754 REMARK 3 6 3.0800 - 2.9000 0.97 3344 143 0.2209 0.2815 REMARK 3 7 2.9000 - 2.7500 0.95 3268 146 0.2362 0.2899 REMARK 3 8 2.7500 - 2.6300 0.96 3320 128 0.2298 0.3178 REMARK 3 9 2.6300 - 2.5300 0.97 3333 144 0.2270 0.2764 REMARK 3 10 2.5300 - 2.4400 0.96 3289 138 0.2294 0.2967 REMARK 3 11 2.4400 - 2.3700 0.97 3363 147 0.2330 0.3029 REMARK 3 12 2.3700 - 2.3000 0.97 3317 145 0.2548 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.5829 -5.3054 -21.9904 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.2026 REMARK 3 T33: 0.2398 T12: 0.0088 REMARK 3 T13: -0.0291 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2340 L22: 0.2307 REMARK 3 L33: 0.5912 L12: -0.0711 REMARK 3 L13: -0.2380 L23: 0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.0066 S13: 0.0134 REMARK 3 S21: -0.0021 S22: 0.0195 S23: 0.0384 REMARK 3 S31: -0.0389 S32: -0.0006 S33: 0.0152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.590 REMARK 200 R MERGE (I) : 0.06556 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: 6OWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 296 REMARK 465 MET A 297 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 PRO A 333 REMARK 465 THR A 334 REMARK 465 VAL A 458 REMARK 465 TYR A 459 REMARK 465 THR A 460 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 LYS A 531 REMARK 465 ASN A 532 REMARK 465 VAL A 533 REMARK 465 VAL A 534 REMARK 465 HIS A 547 REMARK 465 ARG A 548 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 SER B 296 REMARK 465 MET B 297 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 PRO B 336 REMARK 465 PHE B 337 REMARK 465 SER B 338 REMARK 465 GLU B 339 REMARK 465 VAL B 458 REMARK 465 TYR B 459 REMARK 465 THR B 460 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 SER B 468 REMARK 465 LEU B 469 REMARK 465 GLU B 470 REMARK 465 GLU B 471 REMARK 465 LYS B 531 REMARK 465 ASN B 532 REMARK 465 VAL B 533 REMARK 465 VAL B 534 REMARK 465 PRO B 535 REMARK 465 ASP B 545 REMARK 465 ALA B 546 REMARK 465 HIS B 547 REMARK 465 ARG B 548 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 SER C 296 REMARK 465 MET C 297 REMARK 465 ILE C 298 REMARK 465 LYS C 299 REMARK 465 ARG C 300 REMARK 465 SER C 301 REMARK 465 LYS C 302 REMARK 465 LYS C 303 REMARK 465 ASN C 304 REMARK 465 SER C 305 REMARK 465 LEU C 306 REMARK 465 ASP C 332 REMARK 465 PRO C 333 REMARK 465 THR C 334 REMARK 465 VAL C 458 REMARK 465 TYR C 459 REMARK 465 THR C 460 REMARK 465 PHE C 461 REMARK 465 LEU C 462 REMARK 465 SER C 463 REMARK 465 SER C 464 REMARK 465 THR C 465 REMARK 465 LEU C 466 REMARK 465 LYS C 467 REMARK 465 SER C 468 REMARK 465 LEU C 469 REMARK 465 GLU C 470 REMARK 465 GLU C 471 REMARK 465 LYS C 531 REMARK 465 ASN C 532 REMARK 465 VAL C 533 REMARK 465 ALA C 546 REMARK 465 HIS C 547 REMARK 465 ARG C 548 REMARK 465 LEU C 549 REMARK 465 HIS C 550 REMARK 465 ALA C 551 REMARK 465 PRO C 552 REMARK 465 THR C 553 REMARK 465 SER C 554 REMARK 465 SER D 296 REMARK 465 MET D 297 REMARK 465 ILE D 298 REMARK 465 LYS D 299 REMARK 465 ARG D 300 REMARK 465 SER D 301 REMARK 465 LYS D 302 REMARK 465 LYS D 303 REMARK 465 ASN D 304 REMARK 465 SER D 305 REMARK 465 LEU D 306 REMARK 465 SER D 417 REMARK 465 VAL D 458 REMARK 465 TYR D 459 REMARK 465 THR D 460 REMARK 465 PHE D 461 REMARK 465 LEU D 462 REMARK 465 SER D 463 REMARK 465 LYS D 531 REMARK 465 ASN D 532 REMARK 465 VAL D 533 REMARK 465 VAL D 534 REMARK 465 PRO D 535 REMARK 465 ASP D 545 REMARK 465 ALA D 546 REMARK 465 HIS D 547 REMARK 465 ARG D 548 REMARK 465 LEU D 549 REMARK 465 HIS D 550 REMARK 465 ALA D 551 REMARK 465 PRO D 552 REMARK 465 THR D 553 REMARK 465 SER D 554 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 331 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 413 CG OD1 ND2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 529 CG CD CE NZ REMARK 470 TYR C 331 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 335 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 339 CG CD OE1 OE2 REMARK 470 LYS C 492 CG CD CE NZ REMARK 470 LYS C 529 CG CD CE NZ REMARK 470 ARG D 335 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 339 CG CD OE1 OE2 REMARK 470 ARG D 412 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 413 CG OD1 ND2 REMARK 470 LYS D 416 CG CD CE NZ REMARK 470 GLU D 419 CG CD OE1 OE2 REMARK 470 GLU D 423 CG CD OE1 OE2 REMARK 470 MET D 437 CG SD CE REMARK 470 ARG D 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 529 CG CD CE NZ REMARK 470 LEU D 539 CG CD1 CD2 REMARK 470 GLU D 542 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 530 C24 2I9 D 601 1.47 REMARK 500 ND1 HIS D 524 O36 2I9 D 601 1.82 REMARK 500 OE2 GLU D 380 OG SER D 537 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 333 CD PRO B 333 N -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 331 56.46 -94.95 REMARK 500 REMARK 500 REMARK: NULL DBREF 7WNV A 297 554 UNP P03372 ESR1_HUMAN 297 554 DBREF 7WNV B 297 554 UNP P03372 ESR1_HUMAN 297 554 DBREF 7WNV C 297 554 UNP P03372 ESR1_HUMAN 297 554 DBREF 7WNV D 297 554 UNP P03372 ESR1_HUMAN 297 554 SEQADV 7WNV SER A 296 UNP P03372 EXPRESSION TAG SEQADV 7WNV SER A 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 7WNV SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 7WNV SER B 296 UNP P03372 EXPRESSION TAG SEQADV 7WNV SER B 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 7WNV SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 7WNV SER C 296 UNP P03372 EXPRESSION TAG SEQADV 7WNV SER C 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 7WNV SER C 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 7WNV SER D 296 UNP P03372 EXPRESSION TAG SEQADV 7WNV SER D 417 UNP P03372 CYS 417 ENGINEERED MUTATION SEQADV 7WNV SER D 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 259 SER MET ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SEQRES 2 A 259 SER LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP SEQRES 3 A 259 ALA GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR SEQRES 4 A 259 ARG PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR SEQRES 5 A 259 ASN LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP SEQRES 6 A 259 ALA LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS SEQRES 7 A 259 ASP GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE SEQRES 8 A 259 LEU MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO SEQRES 9 A 259 GLY LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG SEQRES 10 A 259 ASN GLN GLY LYS SER VAL GLU GLY MET VAL GLU ILE PHE SEQRES 11 A 259 ASP MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET SEQRES 12 A 259 ASN LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE SEQRES 13 A 259 ILE LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER SEQRES 14 A 259 THR LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG SEQRES 15 A 259 VAL LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET SEQRES 16 A 259 ALA LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG SEQRES 17 A 259 LEU ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS SEQRES 18 A 259 MET SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS SEQRES 19 A 259 CYS LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU SEQRES 20 A 259 MET LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 259 SER MET ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SEQRES 2 B 259 SER LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP SEQRES 3 B 259 ALA GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR SEQRES 4 B 259 ARG PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR SEQRES 5 B 259 ASN LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP SEQRES 6 B 259 ALA LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS SEQRES 7 B 259 ASP GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE SEQRES 8 B 259 LEU MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO SEQRES 9 B 259 GLY LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG SEQRES 10 B 259 ASN GLN GLY LYS SER VAL GLU GLY MET VAL GLU ILE PHE SEQRES 11 B 259 ASP MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET SEQRES 12 B 259 ASN LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE SEQRES 13 B 259 ILE LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER SEQRES 14 B 259 THR LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG SEQRES 15 B 259 VAL LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET SEQRES 16 B 259 ALA LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG SEQRES 17 B 259 LEU ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS SEQRES 18 B 259 MET SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS SEQRES 19 B 259 CYS LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU SEQRES 20 B 259 MET LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 259 SER MET ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SEQRES 2 C 259 SER LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP SEQRES 3 C 259 ALA GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR SEQRES 4 C 259 ARG PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR SEQRES 5 C 259 ASN LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP SEQRES 6 C 259 ALA LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS SEQRES 7 C 259 ASP GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE SEQRES 8 C 259 LEU MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO SEQRES 9 C 259 GLY LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG SEQRES 10 C 259 ASN GLN GLY LYS SER VAL GLU GLY MET VAL GLU ILE PHE SEQRES 11 C 259 ASP MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET SEQRES 12 C 259 ASN LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE SEQRES 13 C 259 ILE LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER SEQRES 14 C 259 THR LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG SEQRES 15 C 259 VAL LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET SEQRES 16 C 259 ALA LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG SEQRES 17 C 259 LEU ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS SEQRES 18 C 259 MET SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS SEQRES 19 C 259 CYS LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU SEQRES 20 C 259 MET LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 D 259 SER MET ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SEQRES 2 D 259 SER LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP SEQRES 3 D 259 ALA GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR SEQRES 4 D 259 ARG PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR SEQRES 5 D 259 ASN LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP SEQRES 6 D 259 ALA LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS SEQRES 7 D 259 ASP GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE SEQRES 8 D 259 LEU MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO SEQRES 9 D 259 GLY LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG SEQRES 10 D 259 ASN GLN GLY LYS SER VAL GLU GLY MET VAL GLU ILE PHE SEQRES 11 D 259 ASP MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET SEQRES 12 D 259 ASN LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE SEQRES 13 D 259 ILE LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER SEQRES 14 D 259 THR LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG SEQRES 15 D 259 VAL LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET SEQRES 16 D 259 ALA LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG SEQRES 17 D 259 LEU ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS SEQRES 18 D 259 MET SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS SEQRES 19 D 259 CYS LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU SEQRES 20 D 259 MET LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER HET 2I9 A 601 36 HET 2I9 B 601 36 HET 2I9 C 601 36 HET 2I9 D 601 36 HETNAM 2I9 (~{Z})-4-[2-[4-[[2-(4-HYDROXYPHENYL)-6-OXIDANYL-1- HETNAM 2 2I9 BENZOTHIOPHEN-3-YL]OXY]PHENOXY]ETHYLAMINO]-~{N},~{N}- HETNAM 3 2I9 DIMETHYL-BUT-2-ENAMIDE FORMUL 5 2I9 4(C28 H28 N2 O5 S) FORMUL 9 HOH *85(H2 O) HELIX 1 AA1 THR A 311 ALA A 322 1 12 HELIX 2 AA2 SER A 338 VAL A 364 1 27 HELIX 3 AA3 GLY A 366 LEU A 370 5 5 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 MET A 421 MET A 438 1 18 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 LEU A 469 ALA A 493 1 25 HELIX 9 AA9 THR A 496 SER A 527 1 32 HELIX 10 AB1 LEU A 536 ALA A 546 1 11 HELIX 11 AB2 LEU B 306 LEU B 310 5 5 HELIX 12 AB3 THR B 311 ALA B 322 1 12 HELIX 13 AB4 SER B 341 ARG B 363 1 23 HELIX 14 AB5 THR B 371 SER B 395 1 25 HELIX 15 AB6 ARG B 412 LYS B 416 1 5 HELIX 16 AB7 MET B 421 MET B 438 1 18 HELIX 17 AB8 GLN B 441 SER B 456 1 16 HELIX 18 AB9 ASP B 473 ALA B 493 1 21 HELIX 19 AC1 THR B 496 SER B 527 1 32 HELIX 20 AC2 SER B 537 LEU B 544 1 8 HELIX 21 AC3 THR C 311 ALA C 322 1 12 HELIX 22 AC4 SER C 338 ARG C 363 1 26 HELIX 23 AC5 THR C 371 SER C 395 1 25 HELIX 24 AC6 ARG C 412 LYS C 416 1 5 HELIX 25 AC7 MET C 421 MET C 438 1 18 HELIX 26 AC8 GLN C 441 SER C 456 1 16 HELIX 27 AC9 ASP C 473 ALA C 493 1 21 HELIX 28 AD1 THR C 496 SER C 527 1 32 HELIX 29 AD2 PRO C 535 ASP C 545 1 11 HELIX 30 AD3 THR D 311 ALA D 322 1 12 HELIX 31 AD4 SER D 338 VAL D 364 1 27 HELIX 32 AD5 GLY D 366 LEU D 370 5 5 HELIX 33 AD6 THR D 371 SER D 395 1 25 HELIX 34 AD7 ARG D 412 LYS D 416 1 5 HELIX 35 AD8 MET D 421 ASN D 439 1 19 HELIX 36 AD9 GLN D 441 SER D 456 1 16 HELIX 37 AE1 THR D 465 ALA D 493 1 29 HELIX 38 AE2 THR D 496 SER D 527 1 32 HELIX 39 AE3 SER D 537 LEU D 544 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SHEET 1 AA3 2 LYS C 401 ALA C 405 0 SHEET 2 AA3 2 LEU C 408 ASP C 411 -1 O LEU C 410 N LEU C 402 SHEET 1 AA4 2 LYS D 401 ALA D 405 0 SHEET 2 AA4 2 LEU D 408 ASP D 411 -1 O LEU D 410 N LEU D 402 LINK SG CYS A 530 C24 2I9 A 601 1555 1555 1.78 LINK SG CYS B 530 C24 2I9 B 601 1555 1555 1.68 LINK SG CYS C 530 C24 2I9 C 601 1555 1555 1.76 LINK SG CYS D 530 C23 2I9 D 601 1555 1555 1.79 CRYST1 53.928 58.834 93.062 90.31 105.39 117.15 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018543 0.009508 0.006579 0.00000 SCALE2 0.000000 0.019101 0.002848 0.00000 SCALE3 0.000000 0.000000 0.011269 0.00000