HEADER DNA BINDING PROTEIN 24-JAN-22 7WQ5 TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS TRANSCRIPTIONAL FACTOR WRINKLED1 WITH TITLE 2 DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN ACTIVATOR OF SPORAMIN::LUC 1,PROTEIN WRINKLED 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*GP*TP*GP*GP*AP*CP*GP*AP*TP*GP*AP*AP*AP*CP*CP*GP*AP*GP*GP*AP*AP*GP COMPND 9 *TP*A)-3'); COMPND 10 CHAIN: F, D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*TP*AP*CP*TP*TP*CP*CP*TP*CP*GP*GP*TP*TP*TP*CP*AP*TP*CP*GP*TP*CP*CP COMPND 15 *AP*C)-3'); COMPND 16 CHAIN: C, E; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: WRI1, ASML1, AT3G54320, T12E18.10, T12E18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS TRANSCRIPTIONAL FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHU,Y.G.GAO REVDAT 1 31-AUG-22 7WQ5 0 JRNL AUTH Z.QIAO,Q.KONG,W.T.TEE,A.R.Q.LIM,M.X.TEO,V.OLIERIC,P.M.LOW, JRNL AUTH 2 Y.YANG,G.QIAN,W.MA,Y.G.GAO JRNL TITL MOLECULAR BASIS OF THE KEY REGULATOR WRINKLED1 IN PLANT OIL JRNL TITL 2 BIOSYNTHESIS. JRNL REF SCI ADV V. 8 Q1211 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 36001661 JRNL DOI 10.1126/SCIADV.ABQ1211 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC2_4400 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 31941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7500 - 5.2200 1.00 2930 155 0.1714 0.2053 REMARK 3 2 5.2200 - 4.1500 1.00 2809 148 0.2127 0.2241 REMARK 3 3 4.1500 - 3.6200 1.00 2780 146 0.2378 0.2671 REMARK 3 4 3.6200 - 3.2900 0.99 2720 143 0.2642 0.3058 REMARK 3 5 3.2900 - 3.0600 0.98 2707 143 0.3123 0.3614 REMARK 3 6 3.0600 - 2.8800 1.00 2719 143 0.3457 0.3947 REMARK 3 7 2.8800 - 2.7300 1.00 2761 146 0.3520 0.3943 REMARK 3 8 2.7300 - 2.6100 1.00 2722 143 0.3738 0.4201 REMARK 3 9 2.6100 - 2.5100 1.00 2723 144 0.4202 0.5023 REMARK 3 10 2.5100 - 2.4300 1.00 2751 145 0.4099 0.4523 REMARK 3 11 2.4300 - 2.3500 1.00 2720 143 0.3996 0.4511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.464 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4930 REMARK 3 ANGLE : 0.913 7072 REMARK 3 CHIRALITY : 0.048 756 REMARK 3 PLANARITY : 0.009 569 REMARK 3 DIHEDRAL : 32.005 1329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300027244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 26.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 26.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4,000, EVAPORATION, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.26000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.02500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.26000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.02500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.26000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.02500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.26000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.02500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 56 REMARK 465 GLY A 57 REMARK 465 ALA A 58 REMARK 465 ASP A 231 REMARK 465 ARG A 232 REMARK 465 LEU A 233 REMARK 465 LYS A 234 REMARK 465 LYS A 235 REMARK 465 LYS A 236 REMARK 465 GLY A 237 REMARK 465 VAL A 238 REMARK 465 PHE A 239 REMARK 465 PRO A 240 REMARK 465 PHE A 241 REMARK 465 PRO A 242 REMARK 465 VAL A 243 REMARK 465 ASN A 244 REMARK 465 GLN A 245 REMARK 465 ALA A 246 REMARK 465 ASN A 247 REMARK 465 HIS A 248 REMARK 465 GLN A 249 REMARK 465 GLU A 250 REMARK 465 GLY A 251 REMARK 465 ILE A 252 REMARK 465 LEU A 253 REMARK 465 VAL A 254 REMARK 465 GLU A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 GLN A 258 REMARK 465 GLU A 259 REMARK 465 VAL A 260 REMARK 465 GLU A 261 REMARK 465 THR A 262 REMARK 465 ARG A 263 REMARK 465 GLU A 264 REMARK 465 ALA A 265 REMARK 465 LYS A 266 REMARK 465 GLU A 267 REMARK 465 GLU A 268 REMARK 465 PRO A 269 REMARK 465 ARG A 270 REMARK 465 GLU A 271 REMARK 465 GLU A 272 REMARK 465 VAL A 273 REMARK 465 LYS A 274 REMARK 465 GLN A 275 REMARK 465 GLN A 276 REMARK 465 TYR A 277 REMARK 465 VAL A 278 REMARK 465 GLU A 279 REMARK 465 GLU A 280 REMARK 465 PRO A 281 REMARK 465 PRO A 282 REMARK 465 GLN A 283 REMARK 465 GLU A 284 REMARK 465 GLU A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 LYS A 288 REMARK 465 GLU A 289 REMARK 465 GLU A 290 REMARK 465 GLU A 291 REMARK 465 LYS A 292 REMARK 465 ALA A 293 REMARK 465 GLU A 294 REMARK 465 GLN A 295 REMARK 465 GLN A 296 REMARK 465 GLU A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 VAL A 301 REMARK 465 GLY A 302 REMARK 465 TYR A 303 REMARK 465 SER A 304 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 ALA A 307 REMARK 465 MET B 56 REMARK 465 GLY B 57 REMARK 465 ALA B 58 REMARK 465 SER B 59 REMARK 465 THR B 60 REMARK 465 ARG B 61 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 ASN B 177 REMARK 465 TYR B 215 REMARK 465 ARG B 216 REMARK 465 GLY B 217 REMARK 465 SER B 227 REMARK 465 ASN B 228 REMARK 465 TYR B 229 REMARK 465 ILE B 230 REMARK 465 ASP B 231 REMARK 465 ARG B 232 REMARK 465 LEU B 233 REMARK 465 LYS B 234 REMARK 465 LYS B 235 REMARK 465 LYS B 236 REMARK 465 GLY B 237 REMARK 465 VAL B 238 REMARK 465 PHE B 239 REMARK 465 PRO B 240 REMARK 465 PHE B 241 REMARK 465 PRO B 242 REMARK 465 VAL B 243 REMARK 465 ASN B 244 REMARK 465 GLN B 245 REMARK 465 ALA B 246 REMARK 465 ASN B 247 REMARK 465 HIS B 248 REMARK 465 GLN B 249 REMARK 465 GLU B 250 REMARK 465 GLY B 251 REMARK 465 ILE B 252 REMARK 465 LEU B 253 REMARK 465 VAL B 254 REMARK 465 GLU B 255 REMARK 465 ALA B 256 REMARK 465 LYS B 257 REMARK 465 GLN B 258 REMARK 465 GLU B 259 REMARK 465 VAL B 260 REMARK 465 GLU B 261 REMARK 465 THR B 262 REMARK 465 ARG B 263 REMARK 465 GLU B 264 REMARK 465 ALA B 265 REMARK 465 LYS B 266 REMARK 465 GLU B 267 REMARK 465 GLU B 268 REMARK 465 PRO B 269 REMARK 465 ARG B 270 REMARK 465 GLU B 271 REMARK 465 GLU B 272 REMARK 465 VAL B 273 REMARK 465 LYS B 274 REMARK 465 GLN B 275 REMARK 465 GLN B 276 REMARK 465 TYR B 277 REMARK 465 VAL B 278 REMARK 465 GLU B 279 REMARK 465 GLU B 280 REMARK 465 PRO B 281 REMARK 465 PRO B 282 REMARK 465 GLN B 283 REMARK 465 GLU B 284 REMARK 465 GLU B 285 REMARK 465 GLU B 286 REMARK 465 GLU B 287 REMARK 465 LYS B 288 REMARK 465 GLU B 289 REMARK 465 GLU B 290 REMARK 465 GLU B 291 REMARK 465 LYS B 292 REMARK 465 ALA B 293 REMARK 465 GLU B 294 REMARK 465 GLN B 295 REMARK 465 GLN B 296 REMARK 465 GLU B 297 REMARK 465 ALA B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 465 VAL B 301 REMARK 465 GLY B 302 REMARK 465 TYR B 303 REMARK 465 SER B 304 REMARK 465 GLU B 305 REMARK 465 GLU B 306 REMARK 465 ALA B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 176 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 177 CG OD1 ND2 REMARK 470 ASN A 219 CG OD1 ND2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 187 CG1 CG2 REMARK 470 PHE B 188 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 ASN B 219 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 403 O HOH A 408 1.97 REMARK 500 O PRO B 131 OG1 THR B 134 2.13 REMARK 500 O2 DC D 14 O HOH D 201 2.15 REMARK 500 O ARG A 71 O HOH A 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG F 16 O3' DG F 16 C3' -0.041 REMARK 500 DG C 10 O3' DG C 10 C3' -0.080 REMARK 500 DG C 11 O3' DG C 11 C3' -0.051 REMARK 500 DA D 12 O3' DA D 12 C3' -0.068 REMARK 500 DG E 10 O3' DG E 10 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC F 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 2 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA D 12 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC E 3 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 17 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 175 -119.17 46.63 REMARK 500 TYR B 66 145.71 85.70 REMARK 500 SER B 166 133.09 94.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 7WQ5 A 58 307 UNP Q6X5Y6 WRI1_ARATH 58 307 DBREF 7WQ5 B 58 307 UNP Q6X5Y6 WRI1_ARATH 58 307 DBREF 7WQ5 F 1 24 PDB 7WQ5 7WQ5 1 24 DBREF 7WQ5 C 1 24 PDB 7WQ5 7WQ5 1 24 DBREF 7WQ5 D 1 24 PDB 7WQ5 7WQ5 1 24 DBREF 7WQ5 E 1 24 PDB 7WQ5 7WQ5 1 24 SEQADV 7WQ5 MET A 56 UNP Q6X5Y6 INITIATING METHIONINE SEQADV 7WQ5 GLY A 57 UNP Q6X5Y6 EXPRESSION TAG SEQADV 7WQ5 MET B 56 UNP Q6X5Y6 INITIATING METHIONINE SEQADV 7WQ5 GLY B 57 UNP Q6X5Y6 EXPRESSION TAG SEQRES 1 A 252 MET GLY ALA SER THR ARG ARG SER SER ILE TYR ARG GLY SEQRES 2 A 252 VAL THR ARG HIS ARG TRP THR GLY ARG PHE GLU ALA HIS SEQRES 3 A 252 LEU TRP ASP LYS SER SER TRP ASN SER ILE GLN ASN LYS SEQRES 4 A 252 LYS GLY LYS GLN VAL TYR LEU GLY ALA TYR ASP SER GLU SEQRES 5 A 252 GLU ALA ALA ALA HIS THR TYR ASP LEU ALA ALA LEU LYS SEQRES 6 A 252 TYR TRP GLY PRO ASP THR ILE LEU ASN PHE PRO ALA GLU SEQRES 7 A 252 THR TYR THR LYS GLU LEU GLU GLU MET GLN ARG VAL THR SEQRES 8 A 252 LYS GLU GLU TYR LEU ALA SER LEU ARG ARG GLN SER SER SEQRES 9 A 252 GLY PHE SER ARG GLY VAL SER LYS TYR ARG GLY VAL ALA SEQRES 10 A 252 ARG HIS HIS HIS ASN GLY ARG TRP GLU ALA ARG ILE GLY SEQRES 11 A 252 ARG VAL PHE GLY ASN LYS TYR LEU TYR LEU GLY THR TYR SEQRES 12 A 252 ASN THR GLN GLU GLU ALA ALA ALA ALA TYR ASP MET ALA SEQRES 13 A 252 ALA ILE GLU TYR ARG GLY ALA ASN ALA VAL THR ASN PHE SEQRES 14 A 252 ASP ILE SER ASN TYR ILE ASP ARG LEU LYS LYS LYS GLY SEQRES 15 A 252 VAL PHE PRO PHE PRO VAL ASN GLN ALA ASN HIS GLN GLU SEQRES 16 A 252 GLY ILE LEU VAL GLU ALA LYS GLN GLU VAL GLU THR ARG SEQRES 17 A 252 GLU ALA LYS GLU GLU PRO ARG GLU GLU VAL LYS GLN GLN SEQRES 18 A 252 TYR VAL GLU GLU PRO PRO GLN GLU GLU GLU GLU LYS GLU SEQRES 19 A 252 GLU GLU LYS ALA GLU GLN GLN GLU ALA GLU ILE VAL GLY SEQRES 20 A 252 TYR SER GLU GLU ALA SEQRES 1 B 252 MET GLY ALA SER THR ARG ARG SER SER ILE TYR ARG GLY SEQRES 2 B 252 VAL THR ARG HIS ARG TRP THR GLY ARG PHE GLU ALA HIS SEQRES 3 B 252 LEU TRP ASP LYS SER SER TRP ASN SER ILE GLN ASN LYS SEQRES 4 B 252 LYS GLY LYS GLN VAL TYR LEU GLY ALA TYR ASP SER GLU SEQRES 5 B 252 GLU ALA ALA ALA HIS THR TYR ASP LEU ALA ALA LEU LYS SEQRES 6 B 252 TYR TRP GLY PRO ASP THR ILE LEU ASN PHE PRO ALA GLU SEQRES 7 B 252 THR TYR THR LYS GLU LEU GLU GLU MET GLN ARG VAL THR SEQRES 8 B 252 LYS GLU GLU TYR LEU ALA SER LEU ARG ARG GLN SER SER SEQRES 9 B 252 GLY PHE SER ARG GLY VAL SER LYS TYR ARG GLY VAL ALA SEQRES 10 B 252 ARG HIS HIS HIS ASN GLY ARG TRP GLU ALA ARG ILE GLY SEQRES 11 B 252 ARG VAL PHE GLY ASN LYS TYR LEU TYR LEU GLY THR TYR SEQRES 12 B 252 ASN THR GLN GLU GLU ALA ALA ALA ALA TYR ASP MET ALA SEQRES 13 B 252 ALA ILE GLU TYR ARG GLY ALA ASN ALA VAL THR ASN PHE SEQRES 14 B 252 ASP ILE SER ASN TYR ILE ASP ARG LEU LYS LYS LYS GLY SEQRES 15 B 252 VAL PHE PRO PHE PRO VAL ASN GLN ALA ASN HIS GLN GLU SEQRES 16 B 252 GLY ILE LEU VAL GLU ALA LYS GLN GLU VAL GLU THR ARG SEQRES 17 B 252 GLU ALA LYS GLU GLU PRO ARG GLU GLU VAL LYS GLN GLN SEQRES 18 B 252 TYR VAL GLU GLU PRO PRO GLN GLU GLU GLU GLU LYS GLU SEQRES 19 B 252 GLU GLU LYS ALA GLU GLN GLN GLU ALA GLU ILE VAL GLY SEQRES 20 B 252 TYR SER GLU GLU ALA SEQRES 1 F 24 DG DT DG DG DA DC DG DA DT DG DA DA DA SEQRES 2 F 24 DC DC DG DA DG DG DA DA DG DT DA SEQRES 1 C 24 DT DA DC DT DT DC DC DT DC DG DG DT DT SEQRES 2 C 24 DT DC DA DT DC DG DT DC DC DA DC SEQRES 1 D 24 DG DT DG DG DA DC DG DA DT DG DA DA DA SEQRES 2 D 24 DC DC DG DA DG DG DA DA DG DT DA SEQRES 1 E 24 DT DA DC DT DT DC DC DT DC DG DG DT DT SEQRES 2 E 24 DT DC DA DT DC DG DT DC DC DA DC HET NH4 D 101 1 HETNAM NH4 AMMONIUM ION FORMUL 7 NH4 H4 N 1+ FORMUL 8 HOH *20(H2 O) HELIX 1 AA1 SER A 106 GLY A 123 1 18 HELIX 2 AA2 PRO A 131 THR A 134 5 4 HELIX 3 AA3 TYR A 135 ARG A 144 1 10 HELIX 4 AA4 THR A 146 GLN A 157 1 12 HELIX 5 AA5 THR A 200 GLY A 217 1 18 HELIX 6 AA6 ASP A 225 ILE A 230 5 6 HELIX 7 AA7 SER B 106 GLY B 123 1 18 HELIX 8 AA8 PRO B 131 THR B 134 5 4 HELIX 9 AA9 TYR B 135 VAL B 145 1 11 HELIX 10 AB1 THR B 146 GLN B 157 1 12 HELIX 11 AB2 THR B 200 GLU B 214 1 15 SHEET 1 AA1 3 VAL A 69 ARG A 71 0 SHEET 2 AA1 3 PHE A 78 TRP A 88 -1 O GLU A 79 N THR A 70 SHEET 3 AA1 3 LYS A 95 TYR A 104 -1 O VAL A 99 N LEU A 82 SHEET 1 AA2 3 VAL A 171 HIS A 174 0 SHEET 2 AA2 3 ARG A 179 ARG A 186 -1 O ARG A 179 N HIS A 174 SHEET 3 AA2 3 LYS A 191 TYR A 198 -1 O TYR A 198 N TRP A 180 SHEET 1 AA3 3 VAL B 69 ARG B 71 0 SHEET 2 AA3 3 PHE B 78 ASN B 89 -1 O GLU B 79 N THR B 70 SHEET 3 AA3 3 LYS B 94 TYR B 104 -1 O VAL B 99 N LEU B 82 SHEET 1 AA4 3 VAL B 171 ALA B 172 0 SHEET 2 AA4 3 TRP B 180 GLY B 185 -1 O GLU B 181 N ALA B 172 SHEET 3 AA4 3 TYR B 192 TYR B 198 -1 O TYR B 198 N TRP B 180 CRYST1 92.520 132.050 124.430 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008037 0.00000