HEADER VIRUS 25-JAN-22 7WQP TITLE ADENO-ASSOCIATED VIRUS SEROTYPE PHP.EB IN COMPLEX WITH AAVR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSLEXIA-ASSOCIATED PROTEIN KIAA0319-LIKE PROTEIN; COMPND 3 CHAIN: R; COMPND 4 SYNONYM: ADENO-ASSOCIATED VIRUS RECEPTOR,AAVR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP1; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS 9; SOURCE 9 ORGANISM_TAXID: 235455; SOURCE 10 GENE: CAP; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS ADENO-ASSOCIATED VIRUS SEROTYPE 9, AAVR, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR G.XU,Z.LOU REVDAT 3 26-JUN-24 7WQP 1 JRNL REVDAT 2 13-JUL-22 7WQP 1 JRNL REVDAT 1 15-JUN-22 7WQP 0 JRNL AUTH G.XU,R.ZHANG,H.LI,K.YIN,X.MA,Z.LOU JRNL TITL STRUCTURAL BASIS FOR THE NEUROTROPIC AAV9 AND THE ENGINEERED JRNL TITL 2 AAVPHP.EB RECOGNITION WITH CELLULAR RECEPTORS. JRNL REF MOL THER METHODS CLIN DEV V. 26 52 2022 JRNL REFN ESSN 2329-0501 JRNL PMID 35755945 JRNL DOI 10.1016/J.OMTM.2022.05.009 REMARK 2 REMARK 2 RESOLUTION. 3.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.760 REMARK 3 NUMBER OF PARTICLES : 16526 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7WQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1300026389. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS 9; REMARK 245 DYSLEXIA-ASSOCIATED PROTEIN REMARK 245 KIAA0319-LIKE PROTEIN; CAPSID REMARK 245 PROTEIN VP1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3570.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 481 CE MET A 612 1.87 REMARK 500 OD1 ASP A 587 NZ LYS A 595 1.92 REMARK 500 OH TYR A 415 O HIS A 649 1.99 REMARK 500 OD1 ASP A 587 CD LYS A 595 2.01 REMARK 500 OH TYR A 252 O ILE A 374 2.16 REMARK 500 NH1 ARG A 238 OE2 GLU A 691 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO R 422 N PRO R 422 CA 0.224 REMARK 500 PRO A 365 N PRO A 365 CA 0.225 REMARK 500 GLY A 521 C PRO A 522 N 0.161 REMARK 500 PRO A 610 N PRO A 610 CA 0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO R 422 CA - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 PRO A 365 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 PRO A 365 CA - N - CD ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 522 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO A 522 C - N - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 PRO A 610 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO A 610 CA - N - CD ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 223 115.64 -162.78 REMARK 500 ASP A 237 9.78 82.00 REMARK 500 ASN A 253 19.77 57.08 REMARK 500 SER A 278 79.54 -102.29 REMARK 500 ASN A 287 50.90 -95.14 REMARK 500 ASN A 305 143.39 -176.68 REMARK 500 ASN A 314 113.79 -161.10 REMARK 500 ASN A 319 35.39 70.21 REMARK 500 THR A 381 -168.42 -129.12 REMARK 500 SER A 425 52.11 -96.16 REMARK 500 SER A 429 34.71 -96.92 REMARK 500 TYR A 443 23.74 45.95 REMARK 500 ALA A 510 70.12 60.53 REMARK 500 GLN A 585 48.36 -83.40 REMARK 500 ALA A 591 -6.78 72.18 REMARK 500 GLN A 622 49.90 -93.12 REMARK 500 ILE A 625 -61.95 -99.80 REMARK 500 ASP A 664 89.53 -158.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU R 421 PRO R 422 37.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32712 RELATED DB: EMDB REMARK 900 ADENO-ASSOCIATED VIRUS SEROTYPE PHP.EB IN COMPLEX WITH AAVR DBREF 7WQP R 405 496 UNP Q8IZA0 K319L_HUMAN 405 496 DBREF 7WQP A 219 743 UNP Q6JC40 Q6JC40_9VIRU 219 736 SEQADV 7WQP ASP A 587 UNP Q6JC40 INSERTION SEQADV 7WQP GLY A 588 UNP Q6JC40 INSERTION SEQADV 7WQP THR A 589 UNP Q6JC40 INSERTION SEQADV 7WQP LEU A 590 UNP Q6JC40 INSERTION SEQADV 7WQP ALA A 591 UNP Q6JC40 INSERTION SEQADV 7WQP VAL A 592 UNP Q6JC40 INSERTION SEQADV 7WQP PRO A 593 UNP Q6JC40 INSERTION SEQADV 7WQP PHE A 594 UNP Q6JC40 ALA 587 ENGINEERED MUTATION SEQADV 7WQP LYS A 595 UNP Q6JC40 GLN 588 ENGINEERED MUTATION SEQRES 1 R 92 ASN ARG PRO PRO ILE ALA ILE VAL SER PRO GLN PHE GLN SEQRES 2 R 92 GLU ILE SER LEU PRO THR THR SER THR VAL ILE ASP GLY SEQRES 3 R 92 SER GLN SER THR ASP ASP ASP LYS ILE VAL GLN TYR HIS SEQRES 4 R 92 TRP GLU GLU LEU LYS GLY PRO LEU ARG GLU GLU LYS ILE SEQRES 5 R 92 SER GLU ASP THR ALA ILE LEU LYS LEU SER LYS LEU VAL SEQRES 6 R 92 PRO GLY ASN TYR THR PHE SER LEU THR VAL VAL ASP SER SEQRES 7 R 92 ASP GLY ALA THR ASN SER THR THR ALA ASN LEU THR VAL SEQRES 8 R 92 ASN SEQRES 1 A 525 ASP GLY VAL GLY SER SER SER GLY ASN TRP HIS CYS ASP SEQRES 2 A 525 SER GLN TRP LEU GLY ASP ARG VAL ILE THR THR SER THR SEQRES 3 A 525 ARG THR TRP ALA LEU PRO THR TYR ASN ASN HIS LEU TYR SEQRES 4 A 525 LYS GLN ILE SER ASN SER THR SER GLY GLY SER SER ASN SEQRES 5 A 525 ASP ASN ALA TYR PHE GLY TYR SER THR PRO TRP GLY TYR SEQRES 6 A 525 PHE ASP PHE ASN ARG PHE HIS CYS HIS PHE SER PRO ARG SEQRES 7 A 525 ASP TRP GLN ARG LEU ILE ASN ASN ASN TRP GLY PHE ARG SEQRES 8 A 525 PRO LYS ARG LEU ASN PHE LYS LEU PHE ASN ILE GLN VAL SEQRES 9 A 525 LYS GLU VAL THR ASP ASN ASN GLY VAL LYS THR ILE ALA SEQRES 10 A 525 ASN ASN LEU THR SER THR VAL GLN VAL PHE THR ASP SER SEQRES 11 A 525 ASP TYR GLN LEU PRO TYR VAL LEU GLY SER ALA HIS GLU SEQRES 12 A 525 GLY CYS LEU PRO PRO PHE PRO ALA ASP VAL PHE MET ILE SEQRES 13 A 525 PRO GLN TYR GLY TYR LEU THR LEU ASN ASP GLY SER GLN SEQRES 14 A 525 ALA VAL GLY ARG SER SER PHE TYR CYS LEU GLU TYR PHE SEQRES 15 A 525 PRO SER GLN MET LEU ARG THR GLY ASN ASN PHE GLN PHE SEQRES 16 A 525 SER TYR GLU PHE GLU ASN VAL PRO PHE HIS SER SER TYR SEQRES 17 A 525 ALA HIS SER GLN SER LEU ASP ARG LEU MET ASN PRO LEU SEQRES 18 A 525 ILE ASP GLN TYR LEU TYR TYR LEU SER LYS THR ILE ASN SEQRES 19 A 525 GLY SER GLY GLN ASN GLN GLN THR LEU LYS PHE SER VAL SEQRES 20 A 525 ALA GLY PRO SER ASN MET ALA VAL GLN GLY ARG ASN TYR SEQRES 21 A 525 ILE PRO GLY PRO SER TYR ARG GLN GLN ARG VAL SER THR SEQRES 22 A 525 THR VAL THR GLN ASN ASN ASN SER GLU PHE ALA TRP PRO SEQRES 23 A 525 GLY ALA SER SER TRP ALA LEU ASN GLY ARG ASN SER LEU SEQRES 24 A 525 MET ASN PRO GLY PRO ALA MET ALA SER HIS LYS GLU GLY SEQRES 25 A 525 GLU ASP ARG PHE PHE PRO LEU SER GLY SER LEU ILE PHE SEQRES 26 A 525 GLY LYS GLN GLY THR GLY ARG ASP ASN VAL ASP ALA ASP SEQRES 27 A 525 LYS VAL MET ILE THR ASN GLU GLU GLU ILE LYS THR THR SEQRES 28 A 525 ASN PRO VAL ALA THR GLU SER TYR GLY GLN VAL ALA THR SEQRES 29 A 525 ASN HIS GLN SER ASP GLY THR LEU ALA VAL PRO PHE LYS SEQRES 30 A 525 ALA GLN ALA GLN THR GLY TRP VAL GLN ASN GLN GLY ILE SEQRES 31 A 525 LEU PRO GLY MET VAL TRP GLN ASP ARG ASP VAL TYR LEU SEQRES 32 A 525 GLN GLY PRO ILE TRP ALA LYS ILE PRO HIS THR ASP GLY SEQRES 33 A 525 ASN PHE HIS PRO SER PRO LEU MET GLY GLY PHE GLY MET SEQRES 34 A 525 LYS HIS PRO PRO PRO GLN ILE LEU ILE LYS ASN THR PRO SEQRES 35 A 525 VAL PRO ALA ASP PRO PRO THR ALA PHE ASN LYS ASP LYS SEQRES 36 A 525 LEU ASN SER PHE ILE THR GLN TYR SER THR GLY GLN VAL SEQRES 37 A 525 SER VAL GLU ILE GLU TRP GLU LEU GLN LYS GLU ASN SER SEQRES 38 A 525 LYS ARG TRP ASN PRO GLU ILE GLN TYR THR SER ASN TYR SEQRES 39 A 525 TYR LYS SER ASN ASN VAL GLU PHE ALA VAL ASN THR GLU SEQRES 40 A 525 GLY VAL TYR SER GLU PRO ARG PRO ILE GLY THR ARG TYR SEQRES 41 A 525 LEU THR ARG ASN LEU HELIX 1 AA1 THR A 251 LEU A 256 5 6 HELIX 2 AA2 ARG A 288 PHE A 293 1 6 HELIX 3 AA3 SER A 294 ASN A 303 1 10 HELIX 4 AA4 CYS A 396 PHE A 400 5 5 HELIX 5 AA5 ASP A 554 ASP A 556 5 3 SHEET 1 AA1 2 ILE R 409 ALA R 410 0 SHEET 2 AA1 2 SER R 433 THR R 434 -1 O THR R 434 N ILE R 409 SHEET 1 AA2 5 PHE R 416 SER R 420 0 SHEET 2 AA2 5 THR R 486 ASN R 496 1 O THR R 494 N GLN R 417 SHEET 3 AA2 5 GLY R 471 ASP R 481 -1 N PHE R 475 O ALA R 491 SHEET 4 AA2 5 ILE R 439 LYS R 448 -1 N HIS R 443 O THR R 478 SHEET 5 AA2 5 SER R 457 GLU R 458 -1 O GLU R 458 N TRP R 444 SHEET 1 AA3 2 VAL R 427 ASP R 429 0 SHEET 2 AA3 2 ILE R 462 LYS R 464 -1 O LEU R 463 N ILE R 428 SHEET 1 AA4 3 ARG A 238 THR A 241 0 SHEET 2 AA4 3 ILE A 690 LEU A 694 -1 O TRP A 692 N VAL A 239 SHEET 3 AA4 3 PHE A 308 PRO A 310 -1 N ARG A 309 O GLU A 693 SHEET 1 AA5 4 THR A 244 ARG A 245 0 SHEET 2 AA5 4 GLN A 685 VAL A 688 -1 O VAL A 686 N ARG A 245 SHEET 3 AA5 4 ARG A 312 PHE A 318 -1 N LYS A 316 O SER A 687 SHEET 4 AA5 4 PHE A 411 GLU A 416 -1 O PHE A 411 N LEU A 317 SHEET 1 AA6 5 VAL A 331 ASN A 336 0 SHEET 2 AA6 5 LYS A 323 ASN A 328 -1 N GLU A 324 O ALA A 335 SHEET 3 AA6 5 GLN A 680 THR A 683 -1 O TYR A 681 N LYS A 323 SHEET 4 AA6 5 TRP A 247 LEU A 249 -1 N LEU A 249 O SER A 682 SHEET 5 AA6 5 PHE A 372 MET A 373 1 O PHE A 372 N ALA A 248 SHEET 1 AA7 3 GLN A 259 SER A 261 0 SHEET 2 AA7 3 PHE A 275 TYR A 277 -1 O GLY A 276 N ILE A 260 SHEET 3 AA7 3 TYR A 379 THR A 381 -1 O THR A 381 N PHE A 275 SHEET 1 AA8 4 GLY A 282 PHE A 284 0 SHEET 2 AA8 4 ILE A 654 ASN A 658 -1 O ILE A 656 N GLY A 282 SHEET 3 AA8 4 VAL A 342 THR A 346 -1 N GLN A 343 O LYS A 657 SHEET 4 AA8 4 GLN A 403 LEU A 405 -1 O LEU A 405 N VAL A 342 SHEET 1 AA9 2 ALA A 427 HIS A 428 0 SHEET 2 AA9 2 THR A 740 ARG A 741 1 O ARG A 741 N ALA A 427 SHEET 1 AB1 2 TYR A 446 ILE A 451 0 SHEET 2 AB1 2 GLN A 459 SER A 464 -1 O SER A 464 N TYR A 446 SHEET 1 AB2 2 ILE A 479 PRO A 480 0 SHEET 2 AB2 2 MET A 612 VAL A 613 1 O VAL A 613 N ILE A 479 SHEET 1 AB3 2 SER A 483 TYR A 484 0 SHEET 2 AB3 2 ASN A 605 GLN A 606 -1 O GLN A 606 N SER A 483 SHEET 1 AB4 2 ARG A 488 SER A 490 0 SHEET 2 AB4 2 PHE A 534 PRO A 536 -1 O PHE A 535 N VAL A 489 SHEET 1 AB5 2 ILE A 542 GLY A 544 0 SHEET 2 AB5 2 VAL A 558 ILE A 560 -1 O MET A 559 N PHE A 543 SHEET 1 AB6 2 GLN A 579 ALA A 581 0 SHEET 2 AB6 2 THR A 600 TRP A 602 -1 O GLY A 601 N VAL A 580 SHEET 1 AB7 2 TRP A 626 LYS A 628 0 SHEET 2 AB7 2 PHE A 645 MET A 647 1 O MET A 647 N ALA A 627 CISPEP 1 SER R 413 PRO R 414 0 -3.29 CISPEP 2 ASN A 519 PRO A 520 0 -11.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000