data_7WRL # _entry.id 7WRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WRL pdb_00007wrl 10.2210/pdb7wrl/pdb WWPDB D_1300027300 ? ? EMDB EMD-32732 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local structure of BD55-1239 Fab and SARS-COV2 Omicron RBD complex' _pdbx_database_related.db_id EMD-32732 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WRL _pdbx_database_status.recvd_initial_deposition_date 2022-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Z.Z.' 1 ? 'Xiao, J.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 608 _citation.language ? _citation.page_first 593 _citation.page_last 602 _citation.title 'BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-022-04980-y _citation.pdbx_database_id_PubMed 35714668 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cao, Y.' 1 ? primary 'Yisimayi, A.' 2 ? primary 'Jian, F.' 3 ? primary 'Song, W.' 4 ? primary 'Xiao, T.' 5 ? primary 'Wang, L.' 6 ? primary 'Du, S.' 7 ? primary 'Wang, J.' 8 ? primary 'Li, Q.' 9 ? primary 'Chen, X.' 10 ? primary 'Yu, Y.' 11 ? primary 'Wang, P.' 12 ? primary 'Zhang, Z.' 13 ? primary 'Liu, P.' 14 ? primary 'An, R.' 15 ? primary 'Hao, X.' 16 ? primary 'Wang, Y.' 17 ? primary 'Wang, J.' 18 ? primary 'Feng, R.' 19 ? primary 'Sun, H.' 20 ? primary 'Zhao, L.' 21 ? primary 'Zhang, W.' 22 ? primary 'Zhao, D.' 23 ? primary 'Zheng, J.' 24 ? primary 'Yu, L.' 25 ? primary 'Li, C.' 26 ? primary 'Zhang, N.' 27 ? primary 'Wang, R.' 28 ? primary 'Niu, X.' 29 ? primary 'Yang, S.' 30 ? primary 'Song, X.' 31 ? primary 'Chai, Y.' 32 ? primary 'Hu, Y.' 33 ? primary 'Shi, Y.' 34 ? primary 'Zheng, L.' 35 ? primary 'Li, Z.' 36 ? primary 'Gu, Q.' 37 ? primary 'Shao, F.' 38 ? primary 'Huang, W.' 39 ? primary 'Jin, R.' 40 ? primary 'Shen, Z.' 41 ? primary 'Wang, Y.' 42 ? primary 'Wang, X.' 43 ? primary 'Xiao, J.' 44 ? primary 'Xie, X.S.' 45 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WRL _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man BD55-1239H 13828.252 1 ? ? ? ? 2 polymer man BD55-1239L 11049.867 1 ? ? ? ? 3 polymer man 'Spike protein S1' 21968.818 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVQSGAEVKKPGSSVKVSCKASGDIYSTYASSWVRQAPGQGLEWMGRIIPVSGTVNYADNFQGRVTITADKSTSTAY MELRSLTSEDTAVYYCARDVARGGYSGTDFFDYYYGMDVWGQGTTVT ; ;QVQLVQSGAEVKKPGSSVKVSCKASGDIYSTYASSWVRQAPGQGLEWMGRIIPVSGTVNYADNFQGRVTITADKSTSTAY MELRSLTSEDTAVYYCARDVARGGYSGTDFFDYYYGMDVWGQGTTVT ; A ? 2 'polypeptide(L)' no no ;SALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPDKAPKLLIYDVNNRPSGVSTRFSGSKSGNTASLTISRLQ TDDEADYSCSSYTSSNTWVFGGGTK ; ;SALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPDKAPKLLIYDVNNRPSGVSTRFSGSKSGNTASLTISRLQ TDDEADYSCSSYTSSNTWVFGGGTK ; B ? 3 'polypeptide(L)' no no ;NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLR SYSFRPTYGVGHQPYRVVVLSFELLHAPATVCG ; ;NLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLR SYSFRPTYGVGHQPYRVVVLSFELLHAPATVCG ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLN n 1 7 SER n 1 8 GLY n 1 9 ALA n 1 10 GLU n 1 11 VAL n 1 12 LYS n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 SER n 1 17 SER n 1 18 VAL n 1 19 LYS n 1 20 VAL n 1 21 SER n 1 22 CYS n 1 23 LYS n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 ASP n 1 28 ILE n 1 29 TYR n 1 30 SER n 1 31 THR n 1 32 TYR n 1 33 ALA n 1 34 SER n 1 35 SER n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 GLN n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 MET n 1 49 GLY n 1 50 ARG n 1 51 ILE n 1 52 ILE n 1 53 PRO n 1 54 VAL n 1 55 SER n 1 56 GLY n 1 57 THR n 1 58 VAL n 1 59 ASN n 1 60 TYR n 1 61 ALA n 1 62 ASP n 1 63 ASN n 1 64 PHE n 1 65 GLN n 1 66 GLY n 1 67 ARG n 1 68 VAL n 1 69 THR n 1 70 ILE n 1 71 THR n 1 72 ALA n 1 73 ASP n 1 74 LYS n 1 75 SER n 1 76 THR n 1 77 SER n 1 78 THR n 1 79 ALA n 1 80 TYR n 1 81 MET n 1 82 GLU n 1 83 LEU n 1 84 ARG n 1 85 SER n 1 86 LEU n 1 87 THR n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 VAL n 1 94 TYR n 1 95 TYR n 1 96 CYS n 1 97 ALA n 1 98 ARG n 1 99 ASP n 1 100 VAL n 1 101 ALA n 1 102 ARG n 1 103 GLY n 1 104 GLY n 1 105 TYR n 1 106 SER n 1 107 GLY n 1 108 THR n 1 109 ASP n 1 110 PHE n 1 111 PHE n 1 112 ASP n 1 113 TYR n 1 114 TYR n 1 115 TYR n 1 116 GLY n 1 117 MET n 1 118 ASP n 1 119 VAL n 1 120 TRP n 1 121 GLY n 1 122 GLN n 1 123 GLY n 1 124 THR n 1 125 THR n 1 126 VAL n 1 127 THR n 2 1 SER n 2 2 ALA n 2 3 LEU n 2 4 THR n 2 5 GLN n 2 6 PRO n 2 7 ALA n 2 8 SER n 2 9 VAL n 2 10 SER n 2 11 GLY n 2 12 SER n 2 13 PRO n 2 14 GLY n 2 15 GLN n 2 16 SER n 2 17 ILE n 2 18 THR n 2 19 ILE n 2 20 SER n 2 21 CYS n 2 22 THR n 2 23 GLY n 2 24 THR n 2 25 SER n 2 26 SER n 2 27 ASP n 2 28 VAL n 2 29 GLY n 2 30 GLY n 2 31 TYR n 2 32 ASN n 2 33 TYR n 2 34 VAL n 2 35 SER n 2 36 TRP n 2 37 TYR n 2 38 GLN n 2 39 GLN n 2 40 HIS n 2 41 PRO n 2 42 ASP n 2 43 LYS n 2 44 ALA n 2 45 PRO n 2 46 LYS n 2 47 LEU n 2 48 LEU n 2 49 ILE n 2 50 TYR n 2 51 ASP n 2 52 VAL n 2 53 ASN n 2 54 ASN n 2 55 ARG n 2 56 PRO n 2 57 SER n 2 58 GLY n 2 59 VAL n 2 60 SER n 2 61 THR n 2 62 ARG n 2 63 PHE n 2 64 SER n 2 65 GLY n 2 66 SER n 2 67 LYS n 2 68 SER n 2 69 GLY n 2 70 ASN n 2 71 THR n 2 72 ALA n 2 73 SER n 2 74 LEU n 2 75 THR n 2 76 ILE n 2 77 SER n 2 78 ARG n 2 79 LEU n 2 80 GLN n 2 81 THR n 2 82 ASP n 2 83 ASP n 2 84 GLU n 2 85 ALA n 2 86 ASP n 2 87 TYR n 2 88 SER n 2 89 CYS n 2 90 SER n 2 91 SER n 2 92 TYR n 2 93 THR n 2 94 SER n 2 95 SER n 2 96 ASN n 2 97 THR n 2 98 TRP n 2 99 VAL n 2 100 PHE n 2 101 GLY n 2 102 GLY n 2 103 GLY n 2 104 THR n 2 105 LYS n 3 1 ASN n 3 2 LEU n 3 3 CYS n 3 4 PRO n 3 5 PHE n 3 6 ASP n 3 7 GLU n 3 8 VAL n 3 9 PHE n 3 10 ASN n 3 11 ALA n 3 12 THR n 3 13 ARG n 3 14 PHE n 3 15 ALA n 3 16 SER n 3 17 VAL n 3 18 TYR n 3 19 ALA n 3 20 TRP n 3 21 ASN n 3 22 ARG n 3 23 LYS n 3 24 ARG n 3 25 ILE n 3 26 SER n 3 27 ASN n 3 28 CYS n 3 29 VAL n 3 30 ALA n 3 31 ASP n 3 32 TYR n 3 33 SER n 3 34 VAL n 3 35 LEU n 3 36 TYR n 3 37 ASN n 3 38 LEU n 3 39 ALA n 3 40 PRO n 3 41 PHE n 3 42 PHE n 3 43 THR n 3 44 PHE n 3 45 LYS n 3 46 CYS n 3 47 TYR n 3 48 GLY n 3 49 VAL n 3 50 SER n 3 51 PRO n 3 52 THR n 3 53 LYS n 3 54 LEU n 3 55 ASN n 3 56 ASP n 3 57 LEU n 3 58 CYS n 3 59 PHE n 3 60 THR n 3 61 ASN n 3 62 VAL n 3 63 TYR n 3 64 ALA n 3 65 ASP n 3 66 SER n 3 67 PHE n 3 68 VAL n 3 69 ILE n 3 70 ARG n 3 71 GLY n 3 72 ASP n 3 73 GLU n 3 74 VAL n 3 75 ARG n 3 76 GLN n 3 77 ILE n 3 78 ALA n 3 79 PRO n 3 80 GLY n 3 81 GLN n 3 82 THR n 3 83 GLY n 3 84 ASN n 3 85 ILE n 3 86 ALA n 3 87 ASP n 3 88 TYR n 3 89 ASN n 3 90 TYR n 3 91 LYS n 3 92 LEU n 3 93 PRO n 3 94 ASP n 3 95 ASP n 3 96 PHE n 3 97 THR n 3 98 GLY n 3 99 CYS n 3 100 VAL n 3 101 ILE n 3 102 ALA n 3 103 TRP n 3 104 ASN n 3 105 SER n 3 106 ASN n 3 107 LYS n 3 108 LEU n 3 109 ASP n 3 110 SER n 3 111 LYS n 3 112 VAL n 3 113 SER n 3 114 GLY n 3 115 ASN n 3 116 TYR n 3 117 ASN n 3 118 TYR n 3 119 LEU n 3 120 TYR n 3 121 ARG n 3 122 LEU n 3 123 PHE n 3 124 ARG n 3 125 LYS n 3 126 SER n 3 127 ASN n 3 128 LEU n 3 129 LYS n 3 130 PRO n 3 131 PHE n 3 132 GLU n 3 133 ARG n 3 134 ASP n 3 135 ILE n 3 136 SER n 3 137 THR n 3 138 GLU n 3 139 ILE n 3 140 TYR n 3 141 GLN n 3 142 ALA n 3 143 GLY n 3 144 ASN n 3 145 LYS n 3 146 PRO n 3 147 CYS n 3 148 ASN n 3 149 GLY n 3 150 VAL n 3 151 ALA n 3 152 GLY n 3 153 PHE n 3 154 ASN n 3 155 CYS n 3 156 TYR n 3 157 PHE n 3 158 PRO n 3 159 LEU n 3 160 ARG n 3 161 SER n 3 162 TYR n 3 163 SER n 3 164 PHE n 3 165 ARG n 3 166 PRO n 3 167 THR n 3 168 TYR n 3 169 GLY n 3 170 VAL n 3 171 GLY n 3 172 HIS n 3 173 GLN n 3 174 PRO n 3 175 TYR n 3 176 ARG n 3 177 VAL n 3 178 VAL n 3 179 VAL n 3 180 LEU n 3 181 SER n 3 182 PHE n 3 183 GLU n 3 184 LEU n 3 185 LEU n 3 186 HIS n 3 187 ALA n 3 188 PRO n 3 189 ALA n 3 190 THR n 3 191 VAL n 3 192 CYS n 3 193 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 127 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 105 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 193 ? ? 'S, 2' ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7WRL 7WRL ? 1 ? 1 2 PDB 7WRL 7WRL ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; 334 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WRL A 1 ? 127 ? 7WRL 1 ? 127 ? 1 127 2 2 7WRL B 1 ? 105 ? 7WRL 2 ? 106 ? 2 106 3 3 7WRL R 1 ? 193 ? P0DTC2 334 ? 526 ? 334 526 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 7WRL ASP R 6 ? UNP P0DTC2 GLY 339 variant 339 1 3 7WRL LEU R 38 ? UNP P0DTC2 SER 371 variant 371 2 3 7WRL PRO R 40 ? UNP P0DTC2 SER 373 variant 373 3 3 7WRL PHE R 42 ? UNP P0DTC2 SER 375 variant 375 4 3 7WRL ASN R 84 ? UNP P0DTC2 LYS 417 variant 417 5 3 7WRL LYS R 107 ? UNP P0DTC2 ASN 440 variant 440 6 3 7WRL SER R 113 ? UNP P0DTC2 GLY 446 variant 446 7 3 7WRL ASN R 144 ? UNP P0DTC2 SER 477 variant 477 8 3 7WRL LYS R 145 ? UNP P0DTC2 THR 478 variant 478 9 3 7WRL ALA R 151 ? UNP P0DTC2 GLU 484 variant 484 10 3 7WRL ARG R 160 ? UNP P0DTC2 GLN 493 variant 493 11 3 7WRL SER R 163 ? UNP P0DTC2 GLY 496 variant 496 12 3 7WRL ARG R 165 ? UNP P0DTC2 GLN 498 variant 498 13 3 7WRL TYR R 168 ? UNP P0DTC2 ASN 501 variant 501 14 3 7WRL HIS R 172 ? UNP P0DTC2 TYR 505 variant 505 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WRL _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7WRL _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 3332 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.988 ? 4529 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 21.721 ? 466 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.060 ? 485 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 586 ? f_plane_restr ? ? # _struct.entry_id 7WRL _struct.title 'Local structure of BD55-1239 Fab and SARS-COV2 Omicron RBD complex' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WRL _struct_keywords.text 'SARS-COV2 Omicron, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 62 ? GLN A 65 ? ASP A 62 GLN A 65 5 ? 4 HELX_P HELX_P2 AA2 THR A 87 ? THR A 91 ? THR A 87 THR A 91 5 ? 5 HELX_P HELX_P3 AA3 PRO C 51 ? LEU C 57 ? PRO R 384 LEU R 390 5 ? 7 HELX_P HELX_P4 AA4 ARG C 165 ? GLY C 169 ? ARG R 498 GLY R 502 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 22 A CYS 96 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 99 SG ? ? R CYS 379 R CYS 432 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? C CYS 58 SG ? ? ? 1_555 C CYS 192 SG ? ? R CYS 391 R CYS 525 1_555 ? ? ? ? ? ? ? 2.032 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 5 ? AB1 ? 2 ? AB2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AB1 1 2 ? parallel AB2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 4 ? GLN A 6 ? LEU A 4 GLN A 6 AA1 2 CYS A 22 ? ALA A 24 ? CYS A 22 ALA A 24 AA2 1 SER A 17 ? LYS A 19 ? SER A 17 LYS A 19 AA2 2 GLU A 82 ? ARG A 84 ? GLU A 82 ARG A 84 AA2 3 VAL A 68 ? THR A 69 ? VAL A 68 THR A 69 AA3 1 SER A 34 ? GLN A 39 ? SER A 34 GLN A 39 AA3 2 LEU A 45 ? ILE A 51 ? LEU A 45 ILE A 51 AA3 3 VAL A 58 ? TYR A 60 ? VAL A 58 TYR A 60 AA4 1 ALA A 72 ? ASP A 73 ? ALA A 72 ASP A 73 AA4 2 THR A 78 ? ALA A 79 ? THR A 78 ALA A 79 AA5 1 ALA A 92 ? VAL A 93 ? ALA A 92 VAL A 93 AA5 2 THR A 125 ? VAL A 126 ? THR A 125 VAL A 126 AA6 1 ALA A 97 ? ALA A 101 ? ALA A 97 ALA A 101 AA6 2 TYR A 113 ? TRP A 120 ? TYR A 113 TRP A 120 AA7 1 ILE B 17 ? CYS B 21 ? ILE B 18 CYS B 22 AA7 2 ALA B 72 ? ILE B 76 ? ALA B 73 ILE B 77 AA7 3 SER B 64 ? SER B 66 ? SER B 65 SER B 67 AA8 1 PRO B 45 ? ILE B 49 ? PRO B 46 ILE B 50 AA8 2 SER B 35 ? GLN B 39 ? SER B 36 GLN B 40 AA8 3 ASP B 86 ? SER B 90 ? ASP B 87 SER B 91 AA9 1 LYS C 23 ? ILE C 25 ? LYS R 356 ILE R 358 AA9 2 VAL C 62 ? SER C 66 ? VAL R 395 SER R 399 AA9 3 VAL C 178 ? SER C 181 ? VAL R 511 SER R 514 AA9 4 CYS C 99 ? ALA C 102 ? CYS R 432 ALA R 435 AA9 5 THR C 43 ? CYS C 46 ? THR R 376 CYS R 379 AB1 1 CYS C 28 ? VAL C 29 ? CYS R 361 VAL R 362 AB1 2 VAL C 191 ? CYS C 192 ? VAL R 524 CYS R 525 AB2 1 LEU C 119 ? ARG C 121 ? LEU R 452 ARG R 454 AB2 2 LEU C 159 ? SER C 161 ? LEU R 492 SER R 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 5 O LYS A 23 ? O LYS A 23 AA2 1 2 N VAL A 18 ? N VAL A 18 O LEU A 83 ? O LEU A 83 AA2 2 3 O GLU A 82 ? O GLU A 82 N THR A 69 ? N THR A 69 AA3 1 2 N TRP A 36 ? N TRP A 36 O MET A 48 ? O MET A 48 AA3 2 3 N ARG A 50 ? N ARG A 50 O ASN A 59 ? O ASN A 59 AA4 1 2 N ASP A 73 ? N ASP A 73 O THR A 78 ? O THR A 78 AA5 1 2 N ALA A 92 ? N ALA A 92 O VAL A 126 ? O VAL A 126 AA6 1 2 N ARG A 98 ? N ARG A 98 O VAL A 119 ? O VAL A 119 AA7 1 2 N ILE B 19 ? N ILE B 20 O LEU B 74 ? O LEU B 75 AA7 2 3 O SER B 73 ? O SER B 74 N SER B 66 ? N SER B 67 AA8 1 2 O LYS B 46 ? O LYS B 47 N GLN B 38 ? N GLN B 39 AA8 2 3 N TYR B 37 ? N TYR B 38 O SER B 88 ? O SER B 89 AA9 1 2 N ILE C 25 ? N ILE R 358 O VAL C 62 ? O VAL R 395 AA9 2 3 N ASP C 65 ? N ASP R 398 O VAL C 179 ? O VAL R 512 AA9 3 4 O LEU C 180 ? O LEU R 513 N CYS C 99 ? N CYS R 432 AA9 4 5 O VAL C 100 ? O VAL R 433 N LYS C 45 ? N LYS R 378 AB1 1 2 N CYS C 28 ? N CYS R 361 O CYS C 192 ? O CYS R 525 AB2 1 2 N TYR C 120 ? N TYR R 453 O ARG C 160 ? O ARG R 493 # _atom_sites.entry_id 7WRL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 TRP 120 120 120 TRP TRP A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 THR 127 127 127 THR THR A . n B 2 1 SER 1 2 2 SER SER B . n B 2 2 ALA 2 3 3 ALA ALA B . n B 2 3 LEU 3 4 4 LEU LEU B . n B 2 4 THR 4 5 5 THR THR B . n B 2 5 GLN 5 6 6 GLN GLN B . n B 2 6 PRO 6 7 7 PRO PRO B . n B 2 7 ALA 7 8 8 ALA ALA B . n B 2 8 SER 8 9 9 SER SER B . n B 2 9 VAL 9 10 10 VAL VAL B . n B 2 10 SER 10 11 11 SER SER B . n B 2 11 GLY 11 12 12 GLY GLY B . n B 2 12 SER 12 13 13 SER SER B . n B 2 13 PRO 13 14 14 PRO PRO B . n B 2 14 GLY 14 15 15 GLY GLY B . n B 2 15 GLN 15 16 16 GLN GLN B . n B 2 16 SER 16 17 17 SER SER B . n B 2 17 ILE 17 18 18 ILE ILE B . n B 2 18 THR 18 19 19 THR THR B . n B 2 19 ILE 19 20 20 ILE ILE B . n B 2 20 SER 20 21 21 SER SER B . n B 2 21 CYS 21 22 22 CYS CYS B . n B 2 22 THR 22 23 23 THR THR B . n B 2 23 GLY 23 24 24 GLY GLY B . n B 2 24 THR 24 25 25 THR THR B . n B 2 25 SER 25 26 26 SER SER B . n B 2 26 SER 26 27 27 SER SER B . n B 2 27 ASP 27 28 28 ASP ASP B . n B 2 28 VAL 28 29 29 VAL VAL B . n B 2 29 GLY 29 30 30 GLY GLY B . n B 2 30 GLY 30 31 31 GLY GLY B . n B 2 31 TYR 31 32 32 TYR TYR B . n B 2 32 ASN 32 33 33 ASN ASN B . n B 2 33 TYR 33 34 34 TYR TYR B . n B 2 34 VAL 34 35 35 VAL VAL B . n B 2 35 SER 35 36 36 SER SER B . n B 2 36 TRP 36 37 37 TRP TRP B . n B 2 37 TYR 37 38 38 TYR TYR B . n B 2 38 GLN 38 39 39 GLN GLN B . n B 2 39 GLN 39 40 40 GLN GLN B . n B 2 40 HIS 40 41 41 HIS HIS B . n B 2 41 PRO 41 42 42 PRO PRO B . n B 2 42 ASP 42 43 43 ASP ASP B . n B 2 43 LYS 43 44 44 LYS LYS B . n B 2 44 ALA 44 45 45 ALA ALA B . n B 2 45 PRO 45 46 46 PRO PRO B . n B 2 46 LYS 46 47 47 LYS LYS B . n B 2 47 LEU 47 48 48 LEU LEU B . n B 2 48 LEU 48 49 49 LEU LEU B . n B 2 49 ILE 49 50 50 ILE ILE B . n B 2 50 TYR 50 51 51 TYR TYR B . n B 2 51 ASP 51 52 52 ASP ASP B . n B 2 52 VAL 52 53 53 VAL VAL B . n B 2 53 ASN 53 54 54 ASN ASN B . n B 2 54 ASN 54 55 55 ASN ASN B . n B 2 55 ARG 55 56 56 ARG ARG B . n B 2 56 PRO 56 57 57 PRO PRO B . n B 2 57 SER 57 58 58 SER SER B . n B 2 58 GLY 58 59 59 GLY GLY B . n B 2 59 VAL 59 60 60 VAL VAL B . n B 2 60 SER 60 61 61 SER SER B . n B 2 61 THR 61 62 62 THR THR B . n B 2 62 ARG 62 63 63 ARG ARG B . n B 2 63 PHE 63 64 64 PHE PHE B . n B 2 64 SER 64 65 65 SER SER B . n B 2 65 GLY 65 66 66 GLY GLY B . n B 2 66 SER 66 67 67 SER SER B . n B 2 67 LYS 67 68 68 LYS LYS B . n B 2 68 SER 68 69 69 SER SER B . n B 2 69 GLY 69 70 70 GLY GLY B . n B 2 70 ASN 70 71 71 ASN ASN B . n B 2 71 THR 71 72 72 THR THR B . n B 2 72 ALA 72 73 73 ALA ALA B . n B 2 73 SER 73 74 74 SER SER B . n B 2 74 LEU 74 75 75 LEU LEU B . n B 2 75 THR 75 76 76 THR THR B . n B 2 76 ILE 76 77 77 ILE ILE B . n B 2 77 SER 77 78 78 SER SER B . n B 2 78 ARG 78 79 79 ARG ARG B . n B 2 79 LEU 79 80 80 LEU LEU B . n B 2 80 GLN 80 81 81 GLN GLN B . n B 2 81 THR 81 82 82 THR THR B . n B 2 82 ASP 82 83 83 ASP ASP B . n B 2 83 ASP 83 84 84 ASP ASP B . n B 2 84 GLU 84 85 85 GLU GLU B . n B 2 85 ALA 85 86 86 ALA ALA B . n B 2 86 ASP 86 87 87 ASP ASP B . n B 2 87 TYR 87 88 88 TYR TYR B . n B 2 88 SER 88 89 89 SER SER B . n B 2 89 CYS 89 90 90 CYS CYS B . n B 2 90 SER 90 91 91 SER SER B . n B 2 91 SER 91 92 92 SER SER B . n B 2 92 TYR 92 93 93 TYR TYR B . n B 2 93 THR 93 94 94 THR THR B . n B 2 94 SER 94 95 95 SER SER B . n B 2 95 SER 95 96 96 SER SER B . n B 2 96 ASN 96 97 97 ASN ASN B . n B 2 97 THR 97 98 98 THR THR B . n B 2 98 TRP 98 99 99 TRP TRP B . n B 2 99 VAL 99 100 100 VAL VAL B . n B 2 100 PHE 100 101 101 PHE PHE B . n B 2 101 GLY 101 102 102 GLY GLY B . n B 2 102 GLY 102 103 103 GLY GLY B . n B 2 103 GLY 103 104 104 GLY GLY B . n B 2 104 THR 104 105 105 THR THR B . n B 2 105 LYS 105 106 106 LYS LYS B . n C 3 1 ASN 1 334 334 ASN ASN R . n C 3 2 LEU 2 335 335 LEU LEU R . n C 3 3 CYS 3 336 336 CYS CYS R . n C 3 4 PRO 4 337 337 PRO PRO R . n C 3 5 PHE 5 338 338 PHE PHE R . n C 3 6 ASP 6 339 339 ASP ASP R . n C 3 7 GLU 7 340 340 GLU GLU R . n C 3 8 VAL 8 341 341 VAL VAL R . n C 3 9 PHE 9 342 342 PHE PHE R . n C 3 10 ASN 10 343 343 ASN ASN R . n C 3 11 ALA 11 344 344 ALA ALA R . n C 3 12 THR 12 345 345 THR THR R . n C 3 13 ARG 13 346 346 ARG ARG R . n C 3 14 PHE 14 347 347 PHE PHE R . n C 3 15 ALA 15 348 348 ALA ALA R . n C 3 16 SER 16 349 349 SER SER R . n C 3 17 VAL 17 350 350 VAL VAL R . n C 3 18 TYR 18 351 351 TYR TYR R . n C 3 19 ALA 19 352 352 ALA ALA R . n C 3 20 TRP 20 353 353 TRP TRP R . n C 3 21 ASN 21 354 354 ASN ASN R . n C 3 22 ARG 22 355 355 ARG ARG R . n C 3 23 LYS 23 356 356 LYS LYS R . n C 3 24 ARG 24 357 357 ARG ARG R . n C 3 25 ILE 25 358 358 ILE ILE R . n C 3 26 SER 26 359 359 SER SER R . n C 3 27 ASN 27 360 360 ASN ASN R . n C 3 28 CYS 28 361 361 CYS CYS R . n C 3 29 VAL 29 362 362 VAL VAL R . n C 3 30 ALA 30 363 363 ALA ALA R . n C 3 31 ASP 31 364 364 ASP ASP R . n C 3 32 TYR 32 365 365 TYR TYR R . n C 3 33 SER 33 366 366 SER SER R . n C 3 34 VAL 34 367 367 VAL VAL R . n C 3 35 LEU 35 368 368 LEU LEU R . n C 3 36 TYR 36 369 369 TYR TYR R . n C 3 37 ASN 37 370 370 ASN ASN R . n C 3 38 LEU 38 371 371 LEU LEU R . n C 3 39 ALA 39 372 372 ALA ALA R . n C 3 40 PRO 40 373 373 PRO PRO R . n C 3 41 PHE 41 374 374 PHE PHE R . n C 3 42 PHE 42 375 375 PHE PHE R . n C 3 43 THR 43 376 376 THR THR R . n C 3 44 PHE 44 377 377 PHE PHE R . n C 3 45 LYS 45 378 378 LYS LYS R . n C 3 46 CYS 46 379 379 CYS CYS R . n C 3 47 TYR 47 380 380 TYR TYR R . n C 3 48 GLY 48 381 381 GLY GLY R . n C 3 49 VAL 49 382 382 VAL VAL R . n C 3 50 SER 50 383 383 SER SER R . n C 3 51 PRO 51 384 384 PRO PRO R . n C 3 52 THR 52 385 385 THR THR R . n C 3 53 LYS 53 386 386 LYS LYS R . n C 3 54 LEU 54 387 387 LEU LEU R . n C 3 55 ASN 55 388 388 ASN ASN R . n C 3 56 ASP 56 389 389 ASP ASP R . n C 3 57 LEU 57 390 390 LEU LEU R . n C 3 58 CYS 58 391 391 CYS CYS R . n C 3 59 PHE 59 392 392 PHE PHE R . n C 3 60 THR 60 393 393 THR THR R . n C 3 61 ASN 61 394 394 ASN ASN R . n C 3 62 VAL 62 395 395 VAL VAL R . n C 3 63 TYR 63 396 396 TYR TYR R . n C 3 64 ALA 64 397 397 ALA ALA R . n C 3 65 ASP 65 398 398 ASP ASP R . n C 3 66 SER 66 399 399 SER SER R . n C 3 67 PHE 67 400 400 PHE PHE R . n C 3 68 VAL 68 401 401 VAL VAL R . n C 3 69 ILE 69 402 402 ILE ILE R . n C 3 70 ARG 70 403 403 ARG ARG R . n C 3 71 GLY 71 404 404 GLY GLY R . n C 3 72 ASP 72 405 405 ASP ASP R . n C 3 73 GLU 73 406 406 GLU GLU R . n C 3 74 VAL 74 407 407 VAL VAL R . n C 3 75 ARG 75 408 408 ARG ARG R . n C 3 76 GLN 76 409 409 GLN GLN R . n C 3 77 ILE 77 410 410 ILE ILE R . n C 3 78 ALA 78 411 411 ALA ALA R . n C 3 79 PRO 79 412 412 PRO PRO R . n C 3 80 GLY 80 413 413 GLY GLY R . n C 3 81 GLN 81 414 414 GLN GLN R . n C 3 82 THR 82 415 415 THR THR R . n C 3 83 GLY 83 416 416 GLY GLY R . n C 3 84 ASN 84 417 417 ASN ASN R . n C 3 85 ILE 85 418 418 ILE ILE R . n C 3 86 ALA 86 419 419 ALA ALA R . n C 3 87 ASP 87 420 420 ASP ASP R . n C 3 88 TYR 88 421 421 TYR TYR R . n C 3 89 ASN 89 422 422 ASN ASN R . n C 3 90 TYR 90 423 423 TYR TYR R . n C 3 91 LYS 91 424 424 LYS LYS R . n C 3 92 LEU 92 425 425 LEU LEU R . n C 3 93 PRO 93 426 426 PRO PRO R . n C 3 94 ASP 94 427 427 ASP ASP R . n C 3 95 ASP 95 428 428 ASP ASP R . n C 3 96 PHE 96 429 429 PHE PHE R . n C 3 97 THR 97 430 430 THR THR R . n C 3 98 GLY 98 431 431 GLY GLY R . n C 3 99 CYS 99 432 432 CYS CYS R . n C 3 100 VAL 100 433 433 VAL VAL R . n C 3 101 ILE 101 434 434 ILE ILE R . n C 3 102 ALA 102 435 435 ALA ALA R . n C 3 103 TRP 103 436 436 TRP TRP R . n C 3 104 ASN 104 437 437 ASN ASN R . n C 3 105 SER 105 438 438 SER SER R . n C 3 106 ASN 106 439 439 ASN ASN R . n C 3 107 LYS 107 440 440 LYS LYS R . n C 3 108 LEU 108 441 441 LEU LEU R . n C 3 109 ASP 109 442 442 ASP ASP R . n C 3 110 SER 110 443 443 SER SER R . n C 3 111 LYS 111 444 444 LYS LYS R . n C 3 112 VAL 112 445 445 VAL VAL R . n C 3 113 SER 113 446 446 SER SER R . n C 3 114 GLY 114 447 447 GLY GLY R . n C 3 115 ASN 115 448 448 ASN ASN R . n C 3 116 TYR 116 449 449 TYR TYR R . n C 3 117 ASN 117 450 450 ASN ASN R . n C 3 118 TYR 118 451 451 TYR TYR R . n C 3 119 LEU 119 452 452 LEU LEU R . n C 3 120 TYR 120 453 453 TYR TYR R . n C 3 121 ARG 121 454 454 ARG ARG R . n C 3 122 LEU 122 455 455 LEU LEU R . n C 3 123 PHE 123 456 456 PHE PHE R . n C 3 124 ARG 124 457 457 ARG ARG R . n C 3 125 LYS 125 458 458 LYS LYS R . n C 3 126 SER 126 459 459 SER SER R . n C 3 127 ASN 127 460 460 ASN ASN R . n C 3 128 LEU 128 461 461 LEU LEU R . n C 3 129 LYS 129 462 462 LYS LYS R . n C 3 130 PRO 130 463 463 PRO PRO R . n C 3 131 PHE 131 464 464 PHE PHE R . n C 3 132 GLU 132 465 465 GLU GLU R . n C 3 133 ARG 133 466 466 ARG ARG R . n C 3 134 ASP 134 467 467 ASP ASP R . n C 3 135 ILE 135 468 468 ILE ILE R . n C 3 136 SER 136 469 469 SER SER R . n C 3 137 THR 137 470 470 THR THR R . n C 3 138 GLU 138 471 471 GLU GLU R . n C 3 139 ILE 139 472 472 ILE ILE R . n C 3 140 TYR 140 473 473 TYR TYR R . n C 3 141 GLN 141 474 474 GLN GLN R . n C 3 142 ALA 142 475 475 ALA ALA R . n C 3 143 GLY 143 476 476 GLY GLY R . n C 3 144 ASN 144 477 477 ASN ASN R . n C 3 145 LYS 145 478 478 LYS LYS R . n C 3 146 PRO 146 479 479 PRO PRO R . n C 3 147 CYS 147 480 480 CYS CYS R . n C 3 148 ASN 148 481 481 ASN ASN R . n C 3 149 GLY 149 482 482 GLY GLY R . n C 3 150 VAL 150 483 483 VAL VAL R . n C 3 151 ALA 151 484 484 ALA ALA R . n C 3 152 GLY 152 485 485 GLY GLY R . n C 3 153 PHE 153 486 486 PHE PHE R . n C 3 154 ASN 154 487 487 ASN ASN R . n C 3 155 CYS 155 488 488 CYS CYS R . n C 3 156 TYR 156 489 489 TYR TYR R . n C 3 157 PHE 157 490 490 PHE PHE R . n C 3 158 PRO 158 491 491 PRO PRO R . n C 3 159 LEU 159 492 492 LEU LEU R . n C 3 160 ARG 160 493 493 ARG ARG R . n C 3 161 SER 161 494 494 SER SER R . n C 3 162 TYR 162 495 495 TYR TYR R . n C 3 163 SER 163 496 496 SER SER R . n C 3 164 PHE 164 497 497 PHE PHE R . n C 3 165 ARG 165 498 498 ARG ARG R . n C 3 166 PRO 166 499 499 PRO PRO R . n C 3 167 THR 167 500 500 THR THR R . n C 3 168 TYR 168 501 501 TYR TYR R . n C 3 169 GLY 169 502 502 GLY GLY R . n C 3 170 VAL 170 503 503 VAL VAL R . n C 3 171 GLY 171 504 504 GLY GLY R . n C 3 172 HIS 172 505 505 HIS HIS R . n C 3 173 GLN 173 506 506 GLN GLN R . n C 3 174 PRO 174 507 507 PRO PRO R . n C 3 175 TYR 175 508 508 TYR TYR R . n C 3 176 ARG 176 509 509 ARG ARG R . n C 3 177 VAL 177 510 510 VAL VAL R . n C 3 178 VAL 178 511 511 VAL VAL R . n C 3 179 VAL 179 512 512 VAL VAL R . n C 3 180 LEU 180 513 513 LEU LEU R . n C 3 181 SER 181 514 514 SER SER R . n C 3 182 PHE 182 515 515 PHE PHE R . n C 3 183 GLU 183 516 ? ? ? R . n C 3 184 LEU 184 517 ? ? ? R . n C 3 185 LEU 185 518 ? ? ? R . n C 3 186 HIS 186 519 ? ? ? R . n C 3 187 ALA 187 520 ? ? ? R . n C 3 188 PRO 188 521 ? ? ? R . n C 3 189 ALA 189 522 522 ALA ALA R . n C 3 190 THR 190 523 523 THR THR R . n C 3 191 VAL 191 524 524 VAL VAL R . n C 3 192 CYS 192 525 525 CYS CYS R . n C 3 193 GLY 193 526 526 GLY GLY R . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email 1801110460@pku.edu.cn _pdbx_contact_author.name_first Zhiying _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5690-9796 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-22 2 'Structure model' 1 1 2022-07-13 3 'Structure model' 1 2 2022-08-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7WRL _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WRL _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 3300 _em_3d_reconstruction.resolution 3.51 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Local structure of BD55-1239 Fab and SARS-COV2 Omicron RBD complex' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7WRL _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source OTHER _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name OTHER _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WRL _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WRL _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 7 ? ? -78.74 -166.44 2 1 TYR A 105 ? ? -164.68 -167.42 3 1 SER B 26 ? ? -86.16 48.20 4 1 SER B 27 ? ? -145.44 -11.89 5 1 ASP B 28 ? ? -95.83 -62.61 6 1 ASP B 52 ? ? -85.17 -72.98 7 1 VAL B 53 ? ? -134.49 -51.19 8 1 ASN B 55 ? ? -79.50 -168.84 9 1 SER B 92 ? ? -171.25 147.58 10 1 SER B 96 ? ? -144.11 20.12 11 1 ASN B 97 ? ? 70.37 -3.25 12 1 PRO R 337 ? ? -90.65 54.13 13 1 ASN R 343 ? ? -93.49 55.27 14 1 PHE R 377 ? ? -141.47 49.82 15 1 ALA R 411 ? ? -172.91 144.66 16 1 ASP R 428 ? ? -92.75 32.87 17 1 ASN R 477 ? ? -171.35 -177.55 18 1 LYS R 478 ? ? 53.43 78.06 19 1 PRO R 479 ? ? -64.42 6.49 20 1 PHE R 486 ? ? 71.78 -10.72 21 1 ASN R 487 ? ? -133.60 -39.28 22 1 THR R 500 ? ? -95.21 56.48 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 13 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 14 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -145.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R GLU 516 ? C GLU 183 2 1 Y 1 R LEU 517 ? C LEU 184 3 1 Y 1 R LEU 518 ? C LEU 185 4 1 Y 1 R HIS 519 ? C HIS 186 5 1 Y 1 R ALA 520 ? C ALA 187 6 1 Y 1 R PRO 521 ? C PRO 188 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 305406 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'SARS coronavirus B012' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.07 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #