data_7WRY # _entry.id 7WRY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WRY pdb_00007wry 10.2210/pdb7wry/pdb WWPDB D_1300027327 ? ? EMDB EMD-32737 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local structure of BD55-3546 Fab and SARS-COV2 Delta RBD complex' _pdbx_database_related.db_id EMD-32737 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WRY _pdbx_database_status.recvd_initial_deposition_date 2022-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Z.Z.' 1 ? 'Xiao, J.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 41 _citation.language ? _citation.page_first 111845 _citation.page_last 111845 _citation.title 'Rational identification of potent and broad sarbecovirus-neutralizing antibody cocktails from SARS convalescents.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2022.111845 _citation.pdbx_database_id_PubMed 36493787 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cao, Y.' 1 ? primary 'Jian, F.' 2 ? primary 'Zhang, Z.' 3 ? primary 'Yisimayi, A.' 4 ? primary 'Hao, X.' 5 ? primary 'Bao, L.' 6 ? primary 'Yuan, F.' 7 ? primary 'Yu, Y.' 8 ? primary 'Du, S.' 9 ? primary 'Wang, J.' 10 ? primary 'Xiao, T.' 11 ? primary 'Song, W.' 12 ? primary 'Zhang, Y.' 13 ? primary 'Liu, P.' 14 ? primary 'An, R.' 15 ? primary 'Wang, P.' 16 ? primary 'Wang, Y.' 17 ? primary 'Yang, S.' 18 ? primary 'Niu, X.' 19 ? primary 'Zhang, Y.' 20 ? primary 'Gu, Q.' 21 ? primary 'Shao, F.' 22 ? primary 'Hu, Y.' 23 ? primary 'Yin, W.' 24 ? primary 'Zheng, A.' 25 ? primary 'Wang, Y.' 26 ? primary 'Qin, C.' 27 ? primary 'Jin, R.' 28 ? primary 'Xiao, J.' 29 ? primary 'Xie, X.S.' 30 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WRY _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 21747.389 1 ? ? ? ? 2 polymer man BD55-3546L 11391.639 1 ? ? ? ? 3 polymer man BD55-3546H 13191.855 1 ? ? ? ? 4 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; R ? 2 'polypeptide(L)' no no ;DVVLTQSPATLSVSPGERATLSCRASHNVGTSLAWYQQKPGQAPRLLIHGVSTRATGVPARFSDSGSGTEFTLTISSLQS EDLAVYYCQQYNYWPLTFGGGTKVEI ; ;DVVLTQSPATLSVSPGERATLSCRASHNVGTSLAWYQQKPGQAPRLLIHGVSTRATGVPARFSDSGSGTEFTLTISSLQS EDLAVYYCQQYNYWPLTFGGGTKVEI ; L ? 3 'polypeptide(L)' no no ;QVQLVQSGSALKRPGASVKLSCKASGYTFINYAIHWVRQAPGQGLQWMGWINPNTGIPTYAQGFTGRFVFSLDTSVSTAY LQLSSLKIEDTAVYYCARDQDLYERAFDIWGQGTMVTVS ; ;QVQLVQSGSALKRPGASVKLSCKASGYTFINYAIHWVRQAPGQGLQWMGWINPNTGIPTYAQGFTGRFVFSLDTSVSTAY LQLSSLKIEDTAVYYCARDQDLYERAFDIWGQGTMVTVS ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 CYS n 1 4 PRO n 1 5 PHE n 1 6 GLY n 1 7 GLU n 1 8 VAL n 1 9 PHE n 1 10 ASN n 1 11 ALA n 1 12 THR n 1 13 ARG n 1 14 PHE n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 TYR n 1 19 ALA n 1 20 TRP n 1 21 ASN n 1 22 ARG n 1 23 LYS n 1 24 ARG n 1 25 ILE n 1 26 SER n 1 27 ASN n 1 28 CYS n 1 29 VAL n 1 30 ALA n 1 31 ASP n 1 32 TYR n 1 33 SER n 1 34 VAL n 1 35 LEU n 1 36 TYR n 1 37 ASN n 1 38 SER n 1 39 ALA n 1 40 SER n 1 41 PHE n 1 42 SER n 1 43 THR n 1 44 PHE n 1 45 LYS n 1 46 CYS n 1 47 TYR n 1 48 GLY n 1 49 VAL n 1 50 SER n 1 51 PRO n 1 52 THR n 1 53 LYS n 1 54 LEU n 1 55 ASN n 1 56 ASP n 1 57 LEU n 1 58 CYS n 1 59 PHE n 1 60 THR n 1 61 ASN n 1 62 VAL n 1 63 TYR n 1 64 ALA n 1 65 ASP n 1 66 SER n 1 67 PHE n 1 68 VAL n 1 69 ILE n 1 70 ARG n 1 71 GLY n 1 72 ASP n 1 73 GLU n 1 74 VAL n 1 75 ARG n 1 76 GLN n 1 77 ILE n 1 78 ALA n 1 79 PRO n 1 80 GLY n 1 81 GLN n 1 82 THR n 1 83 GLY n 1 84 LYS n 1 85 ILE n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 ASN n 1 90 TYR n 1 91 LYS n 1 92 LEU n 1 93 PRO n 1 94 ASP n 1 95 ASP n 1 96 PHE n 1 97 THR n 1 98 GLY n 1 99 CYS n 1 100 VAL n 1 101 ILE n 1 102 ALA n 1 103 TRP n 1 104 ASN n 1 105 SER n 1 106 ASN n 1 107 ASN n 1 108 LEU n 1 109 ASP n 1 110 SER n 1 111 LYS n 1 112 VAL n 1 113 GLY n 1 114 GLY n 1 115 ASN n 1 116 TYR n 1 117 ASN n 1 118 TYR n 1 119 ARG n 1 120 TYR n 1 121 ARG n 1 122 LEU n 1 123 PHE n 1 124 ARG n 1 125 LYS n 1 126 SER n 1 127 ASN n 1 128 LEU n 1 129 LYS n 1 130 PRO n 1 131 PHE n 1 132 GLU n 1 133 ARG n 1 134 ASP n 1 135 ILE n 1 136 SER n 1 137 THR n 1 138 GLU n 1 139 ILE n 1 140 TYR n 1 141 GLN n 1 142 ALA n 1 143 GLY n 1 144 SER n 1 145 LYS n 1 146 PRO n 1 147 CYS n 1 148 ASN n 1 149 GLY n 1 150 VAL n 1 151 GLU n 1 152 GLY n 1 153 PHE n 1 154 ASN n 1 155 CYS n 1 156 TYR n 1 157 PHE n 1 158 PRO n 1 159 LEU n 1 160 GLN n 1 161 SER n 1 162 TYR n 1 163 GLY n 1 164 PHE n 1 165 GLN n 1 166 PRO n 1 167 THR n 1 168 ASN n 1 169 GLY n 1 170 VAL n 1 171 GLY n 1 172 TYR n 1 173 GLN n 1 174 PRO n 1 175 TYR n 1 176 ARG n 1 177 VAL n 1 178 VAL n 1 179 VAL n 1 180 LEU n 1 181 SER n 1 182 PHE n 1 183 GLU n 1 184 LEU n 1 185 LEU n 1 186 HIS n 1 187 ALA n 1 188 PRO n 1 189 ALA n 1 190 THR n 1 191 VAL n 1 192 CYS n 1 193 GLY n 2 1 ASP n 2 2 VAL n 2 3 VAL n 2 4 LEU n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 ALA n 2 10 THR n 2 11 LEU n 2 12 SER n 2 13 VAL n 2 14 SER n 2 15 PRO n 2 16 GLY n 2 17 GLU n 2 18 ARG n 2 19 ALA n 2 20 THR n 2 21 LEU n 2 22 SER n 2 23 CYS n 2 24 ARG n 2 25 ALA n 2 26 SER n 2 27 HIS n 2 28 ASN n 2 29 VAL n 2 30 GLY n 2 31 THR n 2 32 SER n 2 33 LEU n 2 34 ALA n 2 35 TRP n 2 36 TYR n 2 37 GLN n 2 38 GLN n 2 39 LYS n 2 40 PRO n 2 41 GLY n 2 42 GLN n 2 43 ALA n 2 44 PRO n 2 45 ARG n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 HIS n 2 50 GLY n 2 51 VAL n 2 52 SER n 2 53 THR n 2 54 ARG n 2 55 ALA n 2 56 THR n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 ALA n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 ASP n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 THR n 2 70 GLU n 2 71 PHE n 2 72 THR n 2 73 LEU n 2 74 THR n 2 75 ILE n 2 76 SER n 2 77 SER n 2 78 LEU n 2 79 GLN n 2 80 SER n 2 81 GLU n 2 82 ASP n 2 83 LEU n 2 84 ALA n 2 85 VAL n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 GLN n 2 90 GLN n 2 91 TYR n 2 92 ASN n 2 93 TYR n 2 94 TRP n 2 95 PRO n 2 96 LEU n 2 97 THR n 2 98 PHE n 2 99 GLY n 2 100 GLY n 2 101 GLY n 2 102 THR n 2 103 LYS n 2 104 VAL n 2 105 GLU n 2 106 ILE n 3 1 GLN n 3 2 VAL n 3 3 GLN n 3 4 LEU n 3 5 VAL n 3 6 GLN n 3 7 SER n 3 8 GLY n 3 9 SER n 3 10 ALA n 3 11 LEU n 3 12 LYS n 3 13 ARG n 3 14 PRO n 3 15 GLY n 3 16 ALA n 3 17 SER n 3 18 VAL n 3 19 LYS n 3 20 LEU n 3 21 SER n 3 22 CYS n 3 23 LYS n 3 24 ALA n 3 25 SER n 3 26 GLY n 3 27 TYR n 3 28 THR n 3 29 PHE n 3 30 ILE n 3 31 ASN n 3 32 TYR n 3 33 ALA n 3 34 ILE n 3 35 HIS n 3 36 TRP n 3 37 VAL n 3 38 ARG n 3 39 GLN n 3 40 ALA n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 GLY n 3 45 LEU n 3 46 GLN n 3 47 TRP n 3 48 MET n 3 49 GLY n 3 50 TRP n 3 51 ILE n 3 52 ASN n 3 53 PRO n 3 54 ASN n 3 55 THR n 3 56 GLY n 3 57 ILE n 3 58 PRO n 3 59 THR n 3 60 TYR n 3 61 ALA n 3 62 GLN n 3 63 GLY n 3 64 PHE n 3 65 THR n 3 66 GLY n 3 67 ARG n 3 68 PHE n 3 69 VAL n 3 70 PHE n 3 71 SER n 3 72 LEU n 3 73 ASP n 3 74 THR n 3 75 SER n 3 76 VAL n 3 77 SER n 3 78 THR n 3 79 ALA n 3 80 TYR n 3 81 LEU n 3 82 GLN n 3 83 LEU n 3 84 SER n 3 85 SER n 3 86 LEU n 3 87 LYS n 3 88 ILE n 3 89 GLU n 3 90 ASP n 3 91 THR n 3 92 ALA n 3 93 VAL n 3 94 TYR n 3 95 TYR n 3 96 CYS n 3 97 ALA n 3 98 ARG n 3 99 ASP n 3 100 GLN n 3 101 ASP n 3 102 LEU n 3 103 TYR n 3 104 GLU n 3 105 ARG n 3 106 ALA n 3 107 PHE n 3 108 ASP n 3 109 ILE n 3 110 TRP n 3 111 GLY n 3 112 GLN n 3 113 GLY n 3 114 THR n 3 115 MET n 3 116 VAL n 3 117 THR n 3 118 VAL n 3 119 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 193 ? ? 'S, 2' ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 106 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 119 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG ; 334 2 PDB 7WRY 7WRY ? 2 ? 1 3 PDB 7WRY 7WRY ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WRY R 1 ? 193 ? P0DTC2 334 ? 526 ? 334 526 2 2 7WRY L 1 ? 106 ? 7WRY 1 ? 106 ? 1 106 3 3 7WRY H 1 ? 119 ? 7WRY 1 ? 119 ? 1 119 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7WRY ARG R 119 ? UNP P0DTC2 LEU 452 conflict 452 1 1 7WRY LYS R 145 ? UNP P0DTC2 THR 478 conflict 478 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WRY _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7WRY _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 3350 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.863 ? 4556 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 19.300 ? 478 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.054 ? 499 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 584 ? f_plane_restr ? ? # _struct.entry_id 7WRY _struct.title 'Local structure of BD55-3546 Fab and SARS-COV2 Delta RBD complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WRY _struct_keywords.text 'SARS-COV2 Delta RBD, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 4 ? VAL A 8 ? PRO R 337 VAL R 341 5 ? 5 HELX_P HELX_P2 AA2 TYR A 32 ? ASN A 37 ? TYR R 365 ASN R 370 1 ? 6 HELX_P HELX_P3 AA3 SER A 50 ? LEU A 54 ? SER R 383 LEU R 387 5 ? 5 HELX_P HELX_P4 AA4 ASP A 72 ? ILE A 77 ? ASP R 405 ILE R 410 5 ? 6 HELX_P HELX_P5 AA5 LYS A 84 ? ASN A 89 ? LYS R 417 ASN R 422 1 ? 6 HELX_P HELX_P6 AA6 SER A 105 ? SER A 110 ? SER R 438 SER R 443 1 ? 6 HELX_P HELX_P7 AA7 THR C 28 ? TYR C 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P8 AA8 LYS C 87 ? THR C 91 ? LYS H 87 THR H 91 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 28 SG ? ? R CYS 336 R CYS 361 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 99 SG ? ? R CYS 379 R CYS 432 1_555 ? ? ? ? ? ? ? 2.060 ? ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 192 SG ? ? R CYS 391 R CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? A CYS 147 SG ? ? ? 1_555 A CYS 155 SG ? ? R CYS 480 R CYS 488 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf5 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf6 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? A ASN 10 ND2 ? ? ? 1_555 D NAG . C1 ? ? R ASN 343 A NAG 1 1_555 ? ? ? ? ? ? ? 1.435 ? N-Glycosylation covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale3 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 B . ? SER 7 L PRO 8 B ? PRO 8 L 1 -2.06 2 TRP 94 B . ? TRP 94 L PRO 95 B ? PRO 95 L 1 -2.46 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 6 ? AA9 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA8 5 6 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 23 ? ILE A 25 ? LYS R 356 ILE R 358 AA1 2 VAL A 62 ? ARG A 70 ? VAL R 395 ARG R 403 AA1 3 PRO A 174 ? SER A 181 ? PRO R 507 SER R 514 AA1 4 GLY A 98 ? ASN A 104 ? GLY R 431 ASN R 437 AA1 5 CYS A 46 ? TYR A 47 ? CYS R 379 TYR R 380 AA2 1 CYS A 28 ? VAL A 29 ? CYS R 361 VAL R 362 AA2 2 VAL A 191 ? CYS A 192 ? VAL R 524 CYS R 525 AA3 1 ARG A 119 ? ARG A 121 ? ARG R 452 ARG R 454 AA3 2 LEU A 159 ? SER A 161 ? LEU R 492 SER R 494 AA4 1 LEU B 4 ? SER B 7 ? LEU L 4 SER L 7 AA4 2 ALA B 19 ? ALA B 25 ? ALA L 19 ALA L 25 AA4 3 PHE B 71 ? ILE B 75 ? PHE L 71 ILE L 75 AA4 4 PHE B 62 ? SER B 65 ? PHE L 62 SER L 65 AA5 1 THR B 10 ? SER B 12 ? THR L 10 SER L 12 AA5 2 LYS B 103 ? GLU B 105 ? LYS L 103 GLU L 105 AA6 1 ARG B 45 ? ILE B 48 ? ARG L 45 ILE L 48 AA6 2 LEU B 33 ? GLN B 37 ? LEU L 33 GLN L 37 AA6 3 CYS B 88 ? GLN B 90 ? CYS L 88 GLN L 90 AA6 4 THR B 97 ? PHE B 98 ? THR L 97 PHE L 98 AA7 1 GLN C 3 ? GLN C 6 ? GLN H 3 GLN H 6 AA7 2 VAL C 18 ? SER C 25 ? VAL H 18 SER H 25 AA7 3 THR C 78 ? LEU C 83 ? THR H 78 LEU H 83 AA7 4 PHE C 68 ? ASP C 73 ? PHE H 68 ASP H 73 AA8 1 ALA C 10 ? LYS C 12 ? ALA H 10 LYS H 12 AA8 2 THR C 114 ? VAL C 118 ? THR H 114 VAL H 118 AA8 3 ALA C 92 ? ASP C 99 ? ALA H 92 ASP H 99 AA8 4 ILE C 34 ? GLN C 39 ? ILE H 34 GLN H 39 AA8 5 LEU C 45 ? ILE C 51 ? LEU H 45 ILE H 51 AA8 6 PRO C 58 ? TYR C 60 ? PRO H 58 TYR H 60 AA9 1 ALA C 10 ? LYS C 12 ? ALA H 10 LYS H 12 AA9 2 THR C 114 ? VAL C 118 ? THR H 114 VAL H 118 AA9 3 ALA C 92 ? ASP C 99 ? ALA H 92 ASP H 99 AA9 4 PHE C 107 ? TRP C 110 ? PHE H 107 TRP H 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 25 ? N ILE R 358 O VAL A 62 ? O VAL R 395 AA1 2 3 N ASP A 65 ? N ASP R 398 O VAL A 179 ? O VAL R 512 AA1 3 4 O VAL A 178 ? O VAL R 511 N ILE A 101 ? N ILE R 434 AA1 4 5 O GLY A 98 ? O GLY R 431 N TYR A 47 ? N TYR R 380 AA2 1 2 N CYS A 28 ? N CYS R 361 O CYS A 192 ? O CYS R 525 AA3 1 2 N TYR A 120 ? N TYR R 453 O GLN A 160 ? O GLN R 493 AA4 1 2 N THR B 5 ? N THR L 5 O ARG B 24 ? O ARG L 24 AA4 2 3 N CYS B 23 ? N CYS L 23 O PHE B 71 ? O PHE L 71 AA4 3 4 O THR B 74 ? O THR L 74 N SER B 63 ? N SER L 63 AA5 1 2 N LEU B 11 ? N LEU L 11 O GLU B 105 ? O GLU L 105 AA6 1 2 O LEU B 47 ? O LEU L 47 N TRP B 35 ? N TRP L 35 AA6 2 3 N ALA B 34 ? N ALA L 34 O GLN B 89 ? O GLN L 89 AA6 3 4 N GLN B 90 ? N GLN L 90 O THR B 97 ? O THR L 97 AA7 1 2 N VAL C 5 ? N VAL H 5 O LYS C 23 ? O LYS H 23 AA7 2 3 N CYS C 22 ? N CYS H 22 O ALA C 79 ? O ALA H 79 AA7 3 4 O TYR C 80 ? O TYR H 80 N SER C 71 ? N SER H 71 AA8 1 2 N ALA C 10 ? N ALA H 10 O THR C 117 ? O THR H 117 AA8 2 3 O VAL C 116 ? O VAL H 116 N ALA C 92 ? N ALA H 92 AA8 3 4 O ALA C 97 ? O ALA H 97 N HIS C 35 ? N HIS H 35 AA8 4 5 N TRP C 36 ? N TRP H 36 O GLY C 49 ? O GLY H 49 AA8 5 6 N TRP C 50 ? N TRP H 50 O THR C 59 ? O THR H 59 AA9 1 2 N ALA C 10 ? N ALA H 10 O THR C 117 ? O THR H 117 AA9 2 3 O VAL C 116 ? O VAL H 116 N ALA C 92 ? N ALA H 92 AA9 3 4 N ARG C 98 ? N ARG H 98 O ILE C 109 ? O ILE H 109 # _atom_sites.entry_id 7WRY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 334 334 ASN ASN R . n A 1 2 LEU 2 335 335 LEU LEU R . n A 1 3 CYS 3 336 336 CYS CYS R . n A 1 4 PRO 4 337 337 PRO PRO R . n A 1 5 PHE 5 338 338 PHE PHE R . n A 1 6 GLY 6 339 339 GLY GLY R . n A 1 7 GLU 7 340 340 GLU GLU R . n A 1 8 VAL 8 341 341 VAL VAL R . n A 1 9 PHE 9 342 342 PHE PHE R . n A 1 10 ASN 10 343 343 ASN ASN R . n A 1 11 ALA 11 344 344 ALA ALA R . n A 1 12 THR 12 345 345 THR THR R . n A 1 13 ARG 13 346 346 ARG ARG R . n A 1 14 PHE 14 347 347 PHE PHE R . n A 1 15 ALA 15 348 348 ALA ALA R . n A 1 16 SER 16 349 349 SER SER R . n A 1 17 VAL 17 350 350 VAL VAL R . n A 1 18 TYR 18 351 351 TYR TYR R . n A 1 19 ALA 19 352 352 ALA ALA R . n A 1 20 TRP 20 353 353 TRP TRP R . n A 1 21 ASN 21 354 354 ASN ASN R . n A 1 22 ARG 22 355 355 ARG ARG R . n A 1 23 LYS 23 356 356 LYS LYS R . n A 1 24 ARG 24 357 357 ARG ARG R . n A 1 25 ILE 25 358 358 ILE ILE R . n A 1 26 SER 26 359 359 SER SER R . n A 1 27 ASN 27 360 360 ASN ASN R . n A 1 28 CYS 28 361 361 CYS CYS R . n A 1 29 VAL 29 362 362 VAL VAL R . n A 1 30 ALA 30 363 363 ALA ALA R . n A 1 31 ASP 31 364 364 ASP ASP R . n A 1 32 TYR 32 365 365 TYR TYR R . n A 1 33 SER 33 366 366 SER SER R . n A 1 34 VAL 34 367 367 VAL VAL R . n A 1 35 LEU 35 368 368 LEU LEU R . n A 1 36 TYR 36 369 369 TYR TYR R . n A 1 37 ASN 37 370 370 ASN ASN R . n A 1 38 SER 38 371 371 SER SER R . n A 1 39 ALA 39 372 372 ALA ALA R . n A 1 40 SER 40 373 373 SER SER R . n A 1 41 PHE 41 374 374 PHE PHE R . n A 1 42 SER 42 375 375 SER SER R . n A 1 43 THR 43 376 376 THR THR R . n A 1 44 PHE 44 377 377 PHE PHE R . n A 1 45 LYS 45 378 378 LYS LYS R . n A 1 46 CYS 46 379 379 CYS CYS R . n A 1 47 TYR 47 380 380 TYR TYR R . n A 1 48 GLY 48 381 381 GLY GLY R . n A 1 49 VAL 49 382 382 VAL VAL R . n A 1 50 SER 50 383 383 SER SER R . n A 1 51 PRO 51 384 384 PRO PRO R . n A 1 52 THR 52 385 385 THR THR R . n A 1 53 LYS 53 386 386 LYS LYS R . n A 1 54 LEU 54 387 387 LEU LEU R . n A 1 55 ASN 55 388 388 ASN ASN R . n A 1 56 ASP 56 389 389 ASP ASP R . n A 1 57 LEU 57 390 390 LEU LEU R . n A 1 58 CYS 58 391 391 CYS CYS R . n A 1 59 PHE 59 392 392 PHE PHE R . n A 1 60 THR 60 393 393 THR THR R . n A 1 61 ASN 61 394 394 ASN ASN R . n A 1 62 VAL 62 395 395 VAL VAL R . n A 1 63 TYR 63 396 396 TYR TYR R . n A 1 64 ALA 64 397 397 ALA ALA R . n A 1 65 ASP 65 398 398 ASP ASP R . n A 1 66 SER 66 399 399 SER SER R . n A 1 67 PHE 67 400 400 PHE PHE R . n A 1 68 VAL 68 401 401 VAL VAL R . n A 1 69 ILE 69 402 402 ILE ILE R . n A 1 70 ARG 70 403 403 ARG ARG R . n A 1 71 GLY 71 404 404 GLY GLY R . n A 1 72 ASP 72 405 405 ASP ASP R . n A 1 73 GLU 73 406 406 GLU GLU R . n A 1 74 VAL 74 407 407 VAL VAL R . n A 1 75 ARG 75 408 408 ARG ARG R . n A 1 76 GLN 76 409 409 GLN GLN R . n A 1 77 ILE 77 410 410 ILE ILE R . n A 1 78 ALA 78 411 411 ALA ALA R . n A 1 79 PRO 79 412 412 PRO PRO R . n A 1 80 GLY 80 413 413 GLY GLY R . n A 1 81 GLN 81 414 414 GLN GLN R . n A 1 82 THR 82 415 415 THR THR R . n A 1 83 GLY 83 416 416 GLY GLY R . n A 1 84 LYS 84 417 417 LYS LYS R . n A 1 85 ILE 85 418 418 ILE ILE R . n A 1 86 ALA 86 419 419 ALA ALA R . n A 1 87 ASP 87 420 420 ASP ASP R . n A 1 88 TYR 88 421 421 TYR TYR R . n A 1 89 ASN 89 422 422 ASN ASN R . n A 1 90 TYR 90 423 423 TYR TYR R . n A 1 91 LYS 91 424 424 LYS LYS R . n A 1 92 LEU 92 425 425 LEU LEU R . n A 1 93 PRO 93 426 426 PRO PRO R . n A 1 94 ASP 94 427 427 ASP ASP R . n A 1 95 ASP 95 428 428 ASP ASP R . n A 1 96 PHE 96 429 429 PHE PHE R . n A 1 97 THR 97 430 430 THR THR R . n A 1 98 GLY 98 431 431 GLY GLY R . n A 1 99 CYS 99 432 432 CYS CYS R . n A 1 100 VAL 100 433 433 VAL VAL R . n A 1 101 ILE 101 434 434 ILE ILE R . n A 1 102 ALA 102 435 435 ALA ALA R . n A 1 103 TRP 103 436 436 TRP TRP R . n A 1 104 ASN 104 437 437 ASN ASN R . n A 1 105 SER 105 438 438 SER SER R . n A 1 106 ASN 106 439 439 ASN ASN R . n A 1 107 ASN 107 440 440 ASN ASN R . n A 1 108 LEU 108 441 441 LEU LEU R . n A 1 109 ASP 109 442 442 ASP ASP R . n A 1 110 SER 110 443 443 SER SER R . n A 1 111 LYS 111 444 444 LYS LYS R . n A 1 112 VAL 112 445 445 VAL VAL R . n A 1 113 GLY 113 446 446 GLY GLY R . n A 1 114 GLY 114 447 447 GLY GLY R . n A 1 115 ASN 115 448 448 ASN ASN R . n A 1 116 TYR 116 449 449 TYR TYR R . n A 1 117 ASN 117 450 450 ASN ASN R . n A 1 118 TYR 118 451 451 TYR TYR R . n A 1 119 ARG 119 452 452 ARG ARG R . n A 1 120 TYR 120 453 453 TYR TYR R . n A 1 121 ARG 121 454 454 ARG ARG R . n A 1 122 LEU 122 455 455 LEU LEU R . n A 1 123 PHE 123 456 456 PHE PHE R . n A 1 124 ARG 124 457 457 ARG ARG R . n A 1 125 LYS 125 458 458 LYS LYS R . n A 1 126 SER 126 459 459 SER SER R . n A 1 127 ASN 127 460 460 ASN ASN R . n A 1 128 LEU 128 461 461 LEU LEU R . n A 1 129 LYS 129 462 462 LYS LYS R . n A 1 130 PRO 130 463 463 PRO PRO R . n A 1 131 PHE 131 464 464 PHE PHE R . n A 1 132 GLU 132 465 465 GLU GLU R . n A 1 133 ARG 133 466 466 ARG ARG R . n A 1 134 ASP 134 467 467 ASP ASP R . n A 1 135 ILE 135 468 468 ILE ILE R . n A 1 136 SER 136 469 469 SER SER R . n A 1 137 THR 137 470 470 THR THR R . n A 1 138 GLU 138 471 471 GLU GLU R . n A 1 139 ILE 139 472 472 ILE ILE R . n A 1 140 TYR 140 473 473 TYR TYR R . n A 1 141 GLN 141 474 474 GLN GLN R . n A 1 142 ALA 142 475 475 ALA ALA R . n A 1 143 GLY 143 476 476 GLY GLY R . n A 1 144 SER 144 477 477 SER SER R . n A 1 145 LYS 145 478 478 LYS LYS R . n A 1 146 PRO 146 479 479 PRO PRO R . n A 1 147 CYS 147 480 480 CYS CYS R . n A 1 148 ASN 148 481 481 ASN ASN R . n A 1 149 GLY 149 482 482 GLY GLY R . n A 1 150 VAL 150 483 483 VAL VAL R . n A 1 151 GLU 151 484 484 GLU GLU R . n A 1 152 GLY 152 485 485 GLY GLY R . n A 1 153 PHE 153 486 486 PHE PHE R . n A 1 154 ASN 154 487 487 ASN ASN R . n A 1 155 CYS 155 488 488 CYS CYS R . n A 1 156 TYR 156 489 489 TYR TYR R . n A 1 157 PHE 157 490 490 PHE PHE R . n A 1 158 PRO 158 491 491 PRO PRO R . n A 1 159 LEU 159 492 492 LEU LEU R . n A 1 160 GLN 160 493 493 GLN GLN R . n A 1 161 SER 161 494 494 SER SER R . n A 1 162 TYR 162 495 495 TYR TYR R . n A 1 163 GLY 163 496 496 GLY GLY R . n A 1 164 PHE 164 497 497 PHE PHE R . n A 1 165 GLN 165 498 498 GLN GLN R . n A 1 166 PRO 166 499 499 PRO PRO R . n A 1 167 THR 167 500 500 THR THR R . n A 1 168 ASN 168 501 501 ASN ASN R . n A 1 169 GLY 169 502 502 GLY GLY R . n A 1 170 VAL 170 503 503 VAL VAL R . n A 1 171 GLY 171 504 504 GLY GLY R . n A 1 172 TYR 172 505 505 TYR TYR R . n A 1 173 GLN 173 506 506 GLN GLN R . n A 1 174 PRO 174 507 507 PRO PRO R . n A 1 175 TYR 175 508 508 TYR TYR R . n A 1 176 ARG 176 509 509 ARG ARG R . n A 1 177 VAL 177 510 510 VAL VAL R . n A 1 178 VAL 178 511 511 VAL VAL R . n A 1 179 VAL 179 512 512 VAL VAL R . n A 1 180 LEU 180 513 513 LEU LEU R . n A 1 181 SER 181 514 514 SER SER R . n A 1 182 PHE 182 515 515 PHE PHE R . n A 1 183 GLU 183 516 516 GLU GLU R . n A 1 184 LEU 184 517 ? ? ? R . n A 1 185 LEU 185 518 ? ? ? R . n A 1 186 HIS 186 519 ? ? ? R . n A 1 187 ALA 187 520 ? ? ? R . n A 1 188 PRO 188 521 ? ? ? R . n A 1 189 ALA 189 522 522 ALA ALA R . n A 1 190 THR 190 523 523 THR THR R . n A 1 191 VAL 191 524 524 VAL VAL R . n A 1 192 CYS 192 525 525 CYS CYS R . n A 1 193 GLY 193 526 526 GLY GLY R . n B 2 1 ASP 1 1 1 ASP ASP L . n B 2 2 VAL 2 2 2 VAL VAL L . n B 2 3 VAL 3 3 3 VAL VAL L . n B 2 4 LEU 4 4 4 LEU LEU L . n B 2 5 THR 5 5 5 THR THR L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 SER 7 7 7 SER SER L . n B 2 8 PRO 8 8 8 PRO PRO L . n B 2 9 ALA 9 9 9 ALA ALA L . n B 2 10 THR 10 10 10 THR THR L . n B 2 11 LEU 11 11 11 LEU LEU L . n B 2 12 SER 12 12 12 SER SER L . n B 2 13 VAL 13 13 13 VAL VAL L . n B 2 14 SER 14 14 14 SER SER L . n B 2 15 PRO 15 15 15 PRO PRO L . n B 2 16 GLY 16 16 16 GLY GLY L . n B 2 17 GLU 17 17 17 GLU GLU L . n B 2 18 ARG 18 18 18 ARG ARG L . n B 2 19 ALA 19 19 19 ALA ALA L . n B 2 20 THR 20 20 20 THR THR L . n B 2 21 LEU 21 21 21 LEU LEU L . n B 2 22 SER 22 22 22 SER SER L . n B 2 23 CYS 23 23 23 CYS CYS L . n B 2 24 ARG 24 24 24 ARG ARG L . n B 2 25 ALA 25 25 25 ALA ALA L . n B 2 26 SER 26 26 26 SER SER L . n B 2 27 HIS 27 27 27 HIS HIS L . n B 2 28 ASN 28 28 28 ASN ASN L . n B 2 29 VAL 29 29 29 VAL VAL L . n B 2 30 GLY 30 30 30 GLY GLY L . n B 2 31 THR 31 31 31 THR THR L . n B 2 32 SER 32 32 32 SER SER L . n B 2 33 LEU 33 33 33 LEU LEU L . n B 2 34 ALA 34 34 34 ALA ALA L . n B 2 35 TRP 35 35 35 TRP TRP L . n B 2 36 TYR 36 36 36 TYR TYR L . n B 2 37 GLN 37 37 37 GLN GLN L . n B 2 38 GLN 38 38 38 GLN GLN L . n B 2 39 LYS 39 39 39 LYS LYS L . n B 2 40 PRO 40 40 40 PRO PRO L . n B 2 41 GLY 41 41 41 GLY GLY L . n B 2 42 GLN 42 42 42 GLN GLN L . n B 2 43 ALA 43 43 43 ALA ALA L . n B 2 44 PRO 44 44 44 PRO PRO L . n B 2 45 ARG 45 45 45 ARG ARG L . n B 2 46 LEU 46 46 46 LEU LEU L . n B 2 47 LEU 47 47 47 LEU LEU L . n B 2 48 ILE 48 48 48 ILE ILE L . n B 2 49 HIS 49 49 49 HIS HIS L . n B 2 50 GLY 50 50 50 GLY GLY L . n B 2 51 VAL 51 51 51 VAL VAL L . n B 2 52 SER 52 52 52 SER SER L . n B 2 53 THR 53 53 53 THR THR L . n B 2 54 ARG 54 54 54 ARG ARG L . n B 2 55 ALA 55 55 55 ALA ALA L . n B 2 56 THR 56 56 56 THR THR L . n B 2 57 GLY 57 57 57 GLY GLY L . n B 2 58 VAL 58 58 58 VAL VAL L . n B 2 59 PRO 59 59 59 PRO PRO L . n B 2 60 ALA 60 60 60 ALA ALA L . n B 2 61 ARG 61 61 61 ARG ARG L . n B 2 62 PHE 62 62 62 PHE PHE L . n B 2 63 SER 63 63 63 SER SER L . n B 2 64 ASP 64 64 64 ASP ASP L . n B 2 65 SER 65 65 65 SER SER L . n B 2 66 GLY 66 66 66 GLY GLY L . n B 2 67 SER 67 67 67 SER SER L . n B 2 68 GLY 68 68 68 GLY GLY L . n B 2 69 THR 69 69 69 THR THR L . n B 2 70 GLU 70 70 70 GLU GLU L . n B 2 71 PHE 71 71 71 PHE PHE L . n B 2 72 THR 72 72 72 THR THR L . n B 2 73 LEU 73 73 73 LEU LEU L . n B 2 74 THR 74 74 74 THR THR L . n B 2 75 ILE 75 75 75 ILE ILE L . n B 2 76 SER 76 76 76 SER SER L . n B 2 77 SER 77 77 77 SER SER L . n B 2 78 LEU 78 78 78 LEU LEU L . n B 2 79 GLN 79 79 79 GLN GLN L . n B 2 80 SER 80 80 80 SER SER L . n B 2 81 GLU 81 81 81 GLU GLU L . n B 2 82 ASP 82 82 82 ASP ASP L . n B 2 83 LEU 83 83 83 LEU LEU L . n B 2 84 ALA 84 84 84 ALA ALA L . n B 2 85 VAL 85 85 85 VAL VAL L . n B 2 86 TYR 86 86 86 TYR TYR L . n B 2 87 TYR 87 87 87 TYR TYR L . n B 2 88 CYS 88 88 88 CYS CYS L . n B 2 89 GLN 89 89 89 GLN GLN L . n B 2 90 GLN 90 90 90 GLN GLN L . n B 2 91 TYR 91 91 91 TYR TYR L . n B 2 92 ASN 92 92 92 ASN ASN L . n B 2 93 TYR 93 93 93 TYR TYR L . n B 2 94 TRP 94 94 94 TRP TRP L . n B 2 95 PRO 95 95 95 PRO PRO L . n B 2 96 LEU 96 96 96 LEU LEU L . n B 2 97 THR 97 97 97 THR THR L . n B 2 98 PHE 98 98 98 PHE PHE L . n B 2 99 GLY 99 99 99 GLY GLY L . n B 2 100 GLY 100 100 100 GLY GLY L . n B 2 101 GLY 101 101 101 GLY GLY L . n B 2 102 THR 102 102 102 THR THR L . n B 2 103 LYS 103 103 103 LYS LYS L . n B 2 104 VAL 104 104 104 VAL VAL L . n B 2 105 GLU 105 105 105 GLU GLU L . n B 2 106 ILE 106 106 106 ILE ILE L . n C 3 1 GLN 1 1 1 GLN GLN H . n C 3 2 VAL 2 2 2 VAL VAL H . n C 3 3 GLN 3 3 3 GLN GLN H . n C 3 4 LEU 4 4 4 LEU LEU H . n C 3 5 VAL 5 5 5 VAL VAL H . n C 3 6 GLN 6 6 6 GLN GLN H . n C 3 7 SER 7 7 7 SER SER H . n C 3 8 GLY 8 8 8 GLY GLY H . n C 3 9 SER 9 9 9 SER SER H . n C 3 10 ALA 10 10 10 ALA ALA H . n C 3 11 LEU 11 11 11 LEU LEU H . n C 3 12 LYS 12 12 12 LYS LYS H . n C 3 13 ARG 13 13 13 ARG ARG H . n C 3 14 PRO 14 14 14 PRO PRO H . n C 3 15 GLY 15 15 15 GLY GLY H . n C 3 16 ALA 16 16 16 ALA ALA H . n C 3 17 SER 17 17 17 SER SER H . n C 3 18 VAL 18 18 18 VAL VAL H . n C 3 19 LYS 19 19 19 LYS LYS H . n C 3 20 LEU 20 20 20 LEU LEU H . n C 3 21 SER 21 21 21 SER SER H . n C 3 22 CYS 22 22 22 CYS CYS H . n C 3 23 LYS 23 23 23 LYS LYS H . n C 3 24 ALA 24 24 24 ALA ALA H . n C 3 25 SER 25 25 25 SER SER H . n C 3 26 GLY 26 26 26 GLY GLY H . n C 3 27 TYR 27 27 27 TYR TYR H . n C 3 28 THR 28 28 28 THR THR H . n C 3 29 PHE 29 29 29 PHE PHE H . n C 3 30 ILE 30 30 30 ILE ILE H . n C 3 31 ASN 31 31 31 ASN ASN H . n C 3 32 TYR 32 32 32 TYR TYR H . n C 3 33 ALA 33 33 33 ALA ALA H . n C 3 34 ILE 34 34 34 ILE ILE H . n C 3 35 HIS 35 35 35 HIS HIS H . n C 3 36 TRP 36 36 36 TRP TRP H . n C 3 37 VAL 37 37 37 VAL VAL H . n C 3 38 ARG 38 38 38 ARG ARG H . n C 3 39 GLN 39 39 39 GLN GLN H . n C 3 40 ALA 40 40 40 ALA ALA H . n C 3 41 PRO 41 41 41 PRO PRO H . n C 3 42 GLY 42 42 42 GLY GLY H . n C 3 43 GLN 43 43 43 GLN GLN H . n C 3 44 GLY 44 44 44 GLY GLY H . n C 3 45 LEU 45 45 45 LEU LEU H . n C 3 46 GLN 46 46 46 GLN GLN H . n C 3 47 TRP 47 47 47 TRP TRP H . n C 3 48 MET 48 48 48 MET MET H . n C 3 49 GLY 49 49 49 GLY GLY H . n C 3 50 TRP 50 50 50 TRP TRP H . n C 3 51 ILE 51 51 51 ILE ILE H . n C 3 52 ASN 52 52 52 ASN ASN H . n C 3 53 PRO 53 53 53 PRO PRO H . n C 3 54 ASN 54 54 54 ASN ASN H . n C 3 55 THR 55 55 55 THR THR H . n C 3 56 GLY 56 56 56 GLY GLY H . n C 3 57 ILE 57 57 57 ILE ILE H . n C 3 58 PRO 58 58 58 PRO PRO H . n C 3 59 THR 59 59 59 THR THR H . n C 3 60 TYR 60 60 60 TYR TYR H . n C 3 61 ALA 61 61 61 ALA ALA H . n C 3 62 GLN 62 62 62 GLN GLN H . n C 3 63 GLY 63 63 63 GLY GLY H . n C 3 64 PHE 64 64 64 PHE PHE H . n C 3 65 THR 65 65 65 THR THR H . n C 3 66 GLY 66 66 66 GLY GLY H . n C 3 67 ARG 67 67 67 ARG ARG H . n C 3 68 PHE 68 68 68 PHE PHE H . n C 3 69 VAL 69 69 69 VAL VAL H . n C 3 70 PHE 70 70 70 PHE PHE H . n C 3 71 SER 71 71 71 SER SER H . n C 3 72 LEU 72 72 72 LEU LEU H . n C 3 73 ASP 73 73 73 ASP ASP H . n C 3 74 THR 74 74 74 THR THR H . n C 3 75 SER 75 75 75 SER SER H . n C 3 76 VAL 76 76 76 VAL VAL H . n C 3 77 SER 77 77 77 SER SER H . n C 3 78 THR 78 78 78 THR THR H . n C 3 79 ALA 79 79 79 ALA ALA H . n C 3 80 TYR 80 80 80 TYR TYR H . n C 3 81 LEU 81 81 81 LEU LEU H . n C 3 82 GLN 82 82 82 GLN GLN H . n C 3 83 LEU 83 83 83 LEU LEU H . n C 3 84 SER 84 84 84 SER SER H . n C 3 85 SER 85 85 85 SER SER H . n C 3 86 LEU 86 86 86 LEU LEU H . n C 3 87 LYS 87 87 87 LYS LYS H . n C 3 88 ILE 88 88 88 ILE ILE H . n C 3 89 GLU 89 89 89 GLU GLU H . n C 3 90 ASP 90 90 90 ASP ASP H . n C 3 91 THR 91 91 91 THR THR H . n C 3 92 ALA 92 92 92 ALA ALA H . n C 3 93 VAL 93 93 93 VAL VAL H . n C 3 94 TYR 94 94 94 TYR TYR H . n C 3 95 TYR 95 95 95 TYR TYR H . n C 3 96 CYS 96 96 96 CYS CYS H . n C 3 97 ALA 97 97 97 ALA ALA H . n C 3 98 ARG 98 98 98 ARG ARG H . n C 3 99 ASP 99 99 99 ASP ASP H . n C 3 100 GLN 100 100 100 GLN GLN H . n C 3 101 ASP 101 101 101 ASP ASP H . n C 3 102 LEU 102 102 102 LEU LEU H . n C 3 103 TYR 103 103 103 TYR TYR H . n C 3 104 GLU 104 104 104 GLU GLU H . n C 3 105 ARG 105 105 105 ARG ARG H . n C 3 106 ALA 106 106 106 ALA ALA H . n C 3 107 PHE 107 107 107 PHE PHE H . n C 3 108 ASP 108 108 108 ASP ASP H . n C 3 109 ILE 109 109 109 ILE ILE H . n C 3 110 TRP 110 110 110 TRP TRP H . n C 3 111 GLY 111 111 111 GLY GLY H . n C 3 112 GLN 112 112 112 GLN GLN H . n C 3 113 GLY 113 113 113 GLY GLY H . n C 3 114 THR 114 114 114 THR THR H . n C 3 115 MET 115 115 115 MET MET H . n C 3 116 VAL 116 116 116 VAL VAL H . n C 3 117 THR 117 117 117 THR THR H . n C 3 118 VAL 118 118 118 VAL VAL H . n C 3 119 SER 119 119 119 SER SER H . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email 1801110460@pku.edu.cn _pdbx_contact_author.name_first Zhiying _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5690-9796 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-28 2 'Structure model' 1 1 2023-04-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7WRY _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7WRY _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WRY _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 303444 _em_3d_reconstruction.resolution 3.28 _em_3d_reconstruction.resolution_method OTHER _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Local structure of BD55-3546 Fab and SARS-COV2 Delta RBD complex' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7WRY _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name OTHER _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WRY _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WRY _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 R _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 432 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 R _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 432 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 R _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 432 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.28 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 14.08 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA R 352 ? ? -103.83 67.04 2 1 ASN R 370 ? ? -95.05 56.21 3 1 PHE R 377 ? ? -140.34 50.81 4 1 TYR R 473 ? ? -83.50 -159.78 5 1 SER R 477 ? ? -81.80 -160.00 6 1 GLU R 484 ? ? -78.54 -163.72 7 1 ASN R 487 ? ? 47.79 21.82 8 1 PHE H 64 ? ? -97.18 55.38 9 1 LEU H 83 ? ? -101.59 76.50 10 1 GLU H 89 ? ? -84.80 48.53 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TYR _pdbx_validate_peptide_omega.auth_asym_id_1 R _pdbx_validate_peptide_omega.auth_seq_id_1 473 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 R _pdbx_validate_peptide_omega.auth_seq_id_2 474 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R LEU 517 ? A LEU 184 2 1 Y 1 R LEU 518 ? A LEU 185 3 1 Y 1 R HIS 519 ? A HIS 186 4 1 Y 1 R ALA 520 ? A ALA 187 5 1 Y 1 R PRO 521 ? A PRO 188 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.07 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 A NAG 1 R NAG 527 n D 4 NAG 2 A NAG 2 R NAG 528 n D 4 BMA 3 A BMA 3 R BMA 529 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 BMA ? ? BMA ? ? 'SUBJECT OF INVESTIGATION' ? 2 NAG ? ? NAG ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #