data_7WRZ # _entry.id 7WRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WRZ pdb_00007wrz 10.2210/pdb7wrz/pdb WWPDB D_1300027328 ? ? EMDB EMD-32738 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local resolution of BD55-5840 Fab and SARS-COV2 Omicron RBD' _pdbx_database_related.db_id EMD-32738 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WRZ _pdbx_database_status.recvd_initial_deposition_date 2022-01-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Z.Z.' 1 ? 'Xiao, J.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 608 _citation.language ? _citation.page_first 593 _citation.page_last 602 _citation.title 'BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-022-04980-y _citation.pdbx_database_id_PubMed 35714668 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cao, Y.' 1 ? primary 'Yisimayi, A.' 2 ? primary 'Jian, F.' 3 ? primary 'Song, W.' 4 ? primary 'Xiao, T.' 5 ? primary 'Wang, L.' 6 ? primary 'Du, S.' 7 ? primary 'Wang, J.' 8 ? primary 'Li, Q.' 9 ? primary 'Chen, X.' 10 ? primary 'Yu, Y.' 11 ? primary 'Wang, P.' 12 ? primary 'Zhang, Z.' 13 ? primary 'Liu, P.' 14 ? primary 'An, R.' 15 ? primary 'Hao, X.' 16 ? primary 'Wang, Y.' 17 ? primary 'Wang, J.' 18 ? primary 'Feng, R.' 19 ? primary 'Sun, H.' 20 ? primary 'Zhao, L.' 21 ? primary 'Zhang, W.' 22 ? primary 'Zhao, D.' 23 ? primary 'Zheng, J.' 24 ? primary 'Yu, L.' 25 ? primary 'Li, C.' 26 ? primary 'Zhang, N.' 27 ? primary 'Wang, R.' 28 ? primary 'Niu, X.' 29 ? primary 'Yang, S.' 30 ? primary 'Song, X.' 31 ? primary 'Chai, Y.' 32 ? primary 'Hu, Y.' 33 ? primary 'Shi, Y.' 34 ? primary 'Zheng, L.' 35 ? primary 'Li, Z.' 36 ? primary 'Gu, Q.' 37 ? primary 'Shao, F.' 38 ? primary 'Huang, W.' 39 ? primary 'Jin, R.' 40 ? primary 'Shen, Z.' 41 ? primary 'Wang, Y.' 42 ? primary 'Wang, X.' 43 ? primary 'Xiao, J.' 44 ? primary 'Xie, X.S.' 45 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WRZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man BD55-5840H 13136.394 1 ? ? ? ? 2 polymer man BD55-5840L 11635.954 1 ? ? ? ? 3 polymer man 'Spike protein S1' 21983.895 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Omicron RBD' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VQLAQSGSELRKPGASVKVSCDTSGHSFTSNAIHWVRQAPGQGLEWMGWINTDTGTPTYAQGFTGRFVFSLDTSARTAYL QISSLKADDTAVFYCARERDYSDYFFDYWGQGTLVTVSS ; ;VQLAQSGSELRKPGASVKVSCDTSGHSFTSNAIHWVRQAPGQGLEWMGWINTDTGTPTYAQGFTGRFVFSLDTSARTAYL QISSLKADDTAVFYCARERDYSDYFFDYWGQGTLVTVSS ; H ? 2 'polypeptide(L)' no no ;EVVMTQSPASLSVSPGERATLSCRARASLGISTDLAWYQQRPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSL QSEDSAVYYCQQYSNWPLTFGGGTKVEIK ; ;EVVMTQSPASLSVSPGERATLSCRARASLGISTDLAWYQQRPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSL QSEDSAVYYCQQYSNWPLTFGGGTKVEIK ; L ? 3 'polypeptide(L)' no no ;LCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRS YSFRPTYGVGHQPYRVVVLSFELLHAPATVCGK ; ;LCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRS YSFRPTYGVGHQPYRVVVLSFELLHAPATVCGK ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 LEU n 1 4 ALA n 1 5 GLN n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 GLU n 1 10 LEU n 1 11 ARG n 1 12 LYS n 1 13 PRO n 1 14 GLY n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 LYS n 1 19 VAL n 1 20 SER n 1 21 CYS n 1 22 ASP n 1 23 THR n 1 24 SER n 1 25 GLY n 1 26 HIS n 1 27 SER n 1 28 PHE n 1 29 THR n 1 30 SER n 1 31 ASN n 1 32 ALA n 1 33 ILE n 1 34 HIS n 1 35 TRP n 1 36 VAL n 1 37 ARG n 1 38 GLN n 1 39 ALA n 1 40 PRO n 1 41 GLY n 1 42 GLN n 1 43 GLY n 1 44 LEU n 1 45 GLU n 1 46 TRP n 1 47 MET n 1 48 GLY n 1 49 TRP n 1 50 ILE n 1 51 ASN n 1 52 THR n 1 53 ASP n 1 54 THR n 1 55 GLY n 1 56 THR n 1 57 PRO n 1 58 THR n 1 59 TYR n 1 60 ALA n 1 61 GLN n 1 62 GLY n 1 63 PHE n 1 64 THR n 1 65 GLY n 1 66 ARG n 1 67 PHE n 1 68 VAL n 1 69 PHE n 1 70 SER n 1 71 LEU n 1 72 ASP n 1 73 THR n 1 74 SER n 1 75 ALA n 1 76 ARG n 1 77 THR n 1 78 ALA n 1 79 TYR n 1 80 LEU n 1 81 GLN n 1 82 ILE n 1 83 SER n 1 84 SER n 1 85 LEU n 1 86 LYS n 1 87 ALA n 1 88 ASP n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 PHE n 1 94 TYR n 1 95 CYS n 1 96 ALA n 1 97 ARG n 1 98 GLU n 1 99 ARG n 1 100 ASP n 1 101 TYR n 1 102 SER n 1 103 ASP n 1 104 TYR n 1 105 PHE n 1 106 PHE n 1 107 ASP n 1 108 TYR n 1 109 TRP n 1 110 GLY n 1 111 GLN n 1 112 GLY n 1 113 THR n 1 114 LEU n 1 115 VAL n 1 116 THR n 1 117 VAL n 1 118 SER n 1 119 SER n 2 1 GLU n 2 2 VAL n 2 3 VAL n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 ALA n 2 10 SER n 2 11 LEU n 2 12 SER n 2 13 VAL n 2 14 SER n 2 15 PRO n 2 16 GLY n 2 17 GLU n 2 18 ARG n 2 19 ALA n 2 20 THR n 2 21 LEU n 2 22 SER n 2 23 CYS n 2 24 ARG n 2 25 ALA n 2 26 ARG n 2 27 ALA n 2 28 SER n 2 29 LEU n 2 30 GLY n 2 31 ILE n 2 32 SER n 2 33 THR n 2 34 ASP n 2 35 LEU n 2 36 ALA n 2 37 TRP n 2 38 TYR n 2 39 GLN n 2 40 GLN n 2 41 ARG n 2 42 PRO n 2 43 GLY n 2 44 GLN n 2 45 ALA n 2 46 PRO n 2 47 ARG n 2 48 LEU n 2 49 LEU n 2 50 ILE n 2 51 TYR n 2 52 GLY n 2 53 ALA n 2 54 SER n 2 55 THR n 2 56 ARG n 2 57 ALA n 2 58 THR n 2 59 GLY n 2 60 ILE n 2 61 PRO n 2 62 ALA n 2 63 ARG n 2 64 PHE n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 SER n 2 70 GLY n 2 71 THR n 2 72 GLU n 2 73 PHE n 2 74 THR n 2 75 LEU n 2 76 THR n 2 77 ILE n 2 78 SER n 2 79 SER n 2 80 LEU n 2 81 GLN n 2 82 SER n 2 83 GLU n 2 84 ASP n 2 85 SER n 2 86 ALA n 2 87 VAL n 2 88 TYR n 2 89 TYR n 2 90 CYS n 2 91 GLN n 2 92 GLN n 2 93 TYR n 2 94 SER n 2 95 ASN n 2 96 TRP n 2 97 PRO n 2 98 LEU n 2 99 THR n 2 100 PHE n 2 101 GLY n 2 102 GLY n 2 103 GLY n 2 104 THR n 2 105 LYS n 2 106 VAL n 2 107 GLU n 2 108 ILE n 2 109 LYS n 3 1 LEU n 3 2 CYS n 3 3 PRO n 3 4 PHE n 3 5 ASP n 3 6 GLU n 3 7 VAL n 3 8 PHE n 3 9 ASN n 3 10 ALA n 3 11 THR n 3 12 ARG n 3 13 PHE n 3 14 ALA n 3 15 SER n 3 16 VAL n 3 17 TYR n 3 18 ALA n 3 19 TRP n 3 20 ASN n 3 21 ARG n 3 22 LYS n 3 23 ARG n 3 24 ILE n 3 25 SER n 3 26 ASN n 3 27 CYS n 3 28 VAL n 3 29 ALA n 3 30 ASP n 3 31 TYR n 3 32 SER n 3 33 VAL n 3 34 LEU n 3 35 TYR n 3 36 ASN n 3 37 LEU n 3 38 ALA n 3 39 PRO n 3 40 PHE n 3 41 PHE n 3 42 THR n 3 43 PHE n 3 44 LYS n 3 45 CYS n 3 46 TYR n 3 47 GLY n 3 48 VAL n 3 49 SER n 3 50 PRO n 3 51 THR n 3 52 LYS n 3 53 LEU n 3 54 ASN n 3 55 ASP n 3 56 LEU n 3 57 CYS n 3 58 PHE n 3 59 THR n 3 60 ASN n 3 61 VAL n 3 62 TYR n 3 63 ALA n 3 64 ASP n 3 65 SER n 3 66 PHE n 3 67 VAL n 3 68 ILE n 3 69 ARG n 3 70 GLY n 3 71 ASP n 3 72 GLU n 3 73 VAL n 3 74 ARG n 3 75 GLN n 3 76 ILE n 3 77 ALA n 3 78 PRO n 3 79 GLY n 3 80 GLN n 3 81 THR n 3 82 GLY n 3 83 ASN n 3 84 ILE n 3 85 ALA n 3 86 ASP n 3 87 TYR n 3 88 ASN n 3 89 TYR n 3 90 LYS n 3 91 LEU n 3 92 PRO n 3 93 ASP n 3 94 ASP n 3 95 PHE n 3 96 THR n 3 97 GLY n 3 98 CYS n 3 99 VAL n 3 100 ILE n 3 101 ALA n 3 102 TRP n 3 103 ASN n 3 104 SER n 3 105 ASN n 3 106 LYS n 3 107 LEU n 3 108 ASP n 3 109 SER n 3 110 LYS n 3 111 VAL n 3 112 SER n 3 113 GLY n 3 114 ASN n 3 115 TYR n 3 116 ASN n 3 117 TYR n 3 118 LEU n 3 119 TYR n 3 120 ARG n 3 121 LEU n 3 122 PHE n 3 123 ARG n 3 124 LYS n 3 125 SER n 3 126 ASN n 3 127 LEU n 3 128 LYS n 3 129 PRO n 3 130 PHE n 3 131 GLU n 3 132 ARG n 3 133 ASP n 3 134 ILE n 3 135 SER n 3 136 THR n 3 137 GLU n 3 138 ILE n 3 139 TYR n 3 140 GLN n 3 141 ALA n 3 142 GLY n 3 143 ASN n 3 144 LYS n 3 145 PRO n 3 146 CYS n 3 147 ASN n 3 148 GLY n 3 149 VAL n 3 150 ALA n 3 151 GLY n 3 152 PHE n 3 153 ASN n 3 154 CYS n 3 155 TYR n 3 156 PHE n 3 157 PRO n 3 158 LEU n 3 159 ARG n 3 160 SER n 3 161 TYR n 3 162 SER n 3 163 PHE n 3 164 ARG n 3 165 PRO n 3 166 THR n 3 167 TYR n 3 168 GLY n 3 169 VAL n 3 170 GLY n 3 171 HIS n 3 172 GLN n 3 173 PRO n 3 174 TYR n 3 175 ARG n 3 176 VAL n 3 177 VAL n 3 178 VAL n 3 179 LEU n 3 180 SER n 3 181 PHE n 3 182 GLU n 3 183 LEU n 3 184 LEU n 3 185 HIS n 3 186 ALA n 3 187 PRO n 3 188 ALA n 3 189 THR n 3 190 VAL n 3 191 CYS n 3 192 GLY n 3 193 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 119 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 109 ? ? ? ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 193 ? ? 'S, 2' ? ? ? ? ? ? 'SARS coronavirus B012' 305406 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7WRZ 7WRZ ? 1 ? 1 2 PDB 7WRZ 7WRZ ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 335 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WRZ H 1 ? 119 ? 7WRZ 2 ? 120 ? 2 120 2 2 7WRZ L 1 ? 109 ? 7WRZ 1 ? 109 ? 1 109 3 3 7WRZ R 1 ? 193 ? P0DTC2 335 ? 527 ? 335 527 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 7WRZ ASP R 5 ? UNP P0DTC2 GLY 339 variant 339 1 3 7WRZ LEU R 37 ? UNP P0DTC2 SER 371 variant 371 2 3 7WRZ PRO R 39 ? UNP P0DTC2 SER 373 variant 373 3 3 7WRZ PHE R 41 ? UNP P0DTC2 SER 375 variant 375 4 3 7WRZ ASN R 83 ? UNP P0DTC2 LYS 417 variant 417 5 3 7WRZ LYS R 106 ? UNP P0DTC2 ASN 440 variant 440 6 3 7WRZ SER R 112 ? UNP P0DTC2 GLY 446 variant 446 7 3 7WRZ ASN R 143 ? UNP P0DTC2 SER 477 variant 477 8 3 7WRZ LYS R 144 ? UNP P0DTC2 THR 478 variant 478 9 3 7WRZ ALA R 150 ? UNP P0DTC2 GLU 484 variant 484 10 3 7WRZ ARG R 159 ? UNP P0DTC2 GLN 493 variant 493 11 3 7WRZ SER R 162 ? UNP P0DTC2 GLY 496 variant 496 12 3 7WRZ ARG R 164 ? UNP P0DTC2 GLN 498 variant 498 13 3 7WRZ TYR R 167 ? UNP P0DTC2 ASN 501 variant 501 14 3 7WRZ HIS R 171 ? UNP P0DTC2 TYR 505 variant 505 15 3 7WRZ LYS R 193 ? UNP P0DTC2 PRO 527 variant 527 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WRZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7WRZ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3355 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.551 ? 4559 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.954 ? 472 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 492 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 587 ? f_plane_restr ? ? # _struct.entry_id 7WRZ _struct.title 'Local resolution of BD55-5840 Fab and SARS-COV2 Omicron RBD' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WRZ _struct_keywords.text 'SARS-COV2 Omicron RBD, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN B 81 ? SER B 85 ? GLN L 81 SER L 85 5 ? 5 HELX_P HELX_P2 AA2 PHE C 4 ? ASN C 9 ? PHE R 338 ASN R 343 1 ? 6 HELX_P HELX_P3 AA3 SER C 15 ? TRP C 19 ? SER R 349 TRP R 353 5 ? 5 HELX_P HELX_P4 AA4 TYR C 31 ? ASN C 36 ? TYR R 365 ASN R 370 1 ? 6 HELX_P HELX_P5 AA5 SER C 49 ? LEU C 56 ? SER R 383 LEU R 390 5 ? 8 HELX_P HELX_P6 AA6 ASP C 71 ? ILE C 76 ? ASP R 405 ILE R 410 5 ? 6 HELX_P HELX_P7 AA7 GLY C 82 ? ASN C 88 ? GLY R 416 ASN R 422 1 ? 7 HELX_P HELX_P8 AA8 SER C 104 ? SER C 109 ? SER R 438 SER R 443 1 ? 6 HELX_P HELX_P9 AA9 GLY C 168 ? HIS C 171 ? GLY R 502 HIS R 505 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 95 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 90 SG ? ? L CYS 23 L CYS 90 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? C CYS 2 SG ? ? ? 1_555 C CYS 27 SG ? ? R CYS 336 R CYS 361 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? C CYS 45 SG ? ? ? 1_555 C CYS 98 SG ? ? R CYS 379 R CYS 432 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf5 disulf ? ? C CYS 57 SG ? ? ? 1_555 C CYS 191 SG ? ? R CYS 391 R CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf6 disulf ? ? C CYS 146 SG ? ? ? 1_555 C CYS 154 SG ? ? R CYS 480 R CYS 488 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale one ? C ASN 9 ND2 ? ? ? 1_555 D NAG . C1 ? ? R ASN 343 C NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.438 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 7 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 7 _struct_mon_prot_cis.auth_asym_id L _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 8 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 8 _struct_mon_prot_cis.pdbx_auth_asym_id_2 L _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 2 ? AA8 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 9 ? ARG A 11 ? GLU H 10 ARG H 12 AA1 2 THR A 113 ? VAL A 117 ? THR H 114 VAL H 118 AA1 3 ALA A 91 ? ARG A 97 ? ALA H 92 ARG H 98 AA1 4 TYR A 108 ? GLY A 110 ? TYR H 109 GLY H 111 AA1 5 GLN A 2 ? GLN A 5 ? GLN H 3 GLN H 6 AA1 6 CYS A 21 ? ASP A 22 ? CYS H 22 ASP H 23 AA2 1 GLU A 9 ? ARG A 11 ? GLU H 10 ARG H 12 AA2 2 THR A 113 ? VAL A 117 ? THR H 114 VAL H 118 AA2 3 ALA A 91 ? ARG A 97 ? ALA H 92 ARG H 98 AA2 4 ALA A 32 ? GLN A 38 ? ALA H 33 GLN H 39 AA2 5 LEU A 44 ? ASN A 51 ? LEU H 45 ASN H 52 AA2 6 PRO A 57 ? TYR A 59 ? PRO H 58 TYR H 60 AA3 1 VAL A 17 ? VAL A 19 ? VAL H 18 VAL H 20 AA3 2 ALA A 78 ? ILE A 82 ? ALA H 79 ILE H 83 AA3 3 PHE A 67 ? LEU A 71 ? PHE H 68 LEU H 72 AA4 1 MET B 4 ? SER B 7 ? MET L 4 SER L 7 AA4 2 ALA B 19 ? ALA B 25 ? ALA L 19 ALA L 25 AA4 3 GLU B 72 ? ILE B 77 ? GLU L 72 ILE L 77 AA4 4 PHE B 64 ? SER B 69 ? PHE L 64 SER L 69 AA5 1 SER B 10 ? VAL B 13 ? SER L 10 VAL L 13 AA5 2 THR B 104 ? ILE B 108 ? THR L 104 ILE L 108 AA5 3 VAL B 87 ? GLN B 92 ? VAL L 87 GLN L 92 AA5 4 LEU B 35 ? GLN B 40 ? LEU L 35 GLN L 40 AA5 5 ARG B 47 ? TYR B 51 ? ARG L 47 TYR L 51 AA6 1 LYS C 22 ? ILE C 24 ? LYS R 356 ILE R 358 AA6 2 VAL C 61 ? ARG C 69 ? VAL R 395 ARG R 403 AA6 3 PRO C 173 ? PHE C 181 ? PRO R 507 PHE R 515 AA6 4 GLY C 97 ? ASN C 103 ? GLY R 431 ASN R 437 AA6 5 THR C 42 ? TYR C 46 ? THR R 376 TYR R 380 AA7 1 LEU C 118 ? ARG C 120 ? LEU R 452 ARG R 454 AA7 2 LEU C 158 ? SER C 160 ? LEU R 492 SER R 494 AA8 1 TYR C 139 ? GLN C 140 ? TYR R 473 GLN R 474 AA8 2 CYS C 154 ? TYR C 155 ? CYS R 488 TYR R 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 9 ? N GLU H 10 O THR A 116 ? O THR H 117 AA1 2 3 O THR A 113 ? O THR H 114 N PHE A 93 ? N PHE H 94 AA1 3 4 N ARG A 97 ? N ARG H 98 O TYR A 108 ? O TYR H 109 AA1 4 5 O TRP A 109 ? O TRP H 110 N LEU A 3 ? N LEU H 4 AA1 5 6 N ALA A 4 ? N ALA H 5 O ASP A 22 ? O ASP H 23 AA2 1 2 N GLU A 9 ? N GLU H 10 O THR A 116 ? O THR H 117 AA2 2 3 O THR A 113 ? O THR H 114 N PHE A 93 ? N PHE H 94 AA2 3 4 O TYR A 94 ? O TYR H 95 N VAL A 36 ? N VAL H 37 AA2 4 5 N ARG A 37 ? N ARG H 38 O GLU A 45 ? O GLU H 46 AA2 5 6 N TRP A 49 ? N TRP H 50 O THR A 58 ? O THR H 59 AA3 1 2 N VAL A 19 ? N VAL H 20 O LEU A 80 ? O LEU H 81 AA3 2 3 O GLN A 81 ? O GLN H 82 N VAL A 68 ? N VAL H 69 AA4 1 2 N THR B 5 ? N THR L 5 O ARG B 24 ? O ARG L 24 AA4 2 3 N LEU B 21 ? N LEU L 21 O LEU B 75 ? O LEU L 75 AA4 3 4 O THR B 76 ? O THR L 76 N SER B 65 ? N SER L 65 AA5 1 2 N VAL B 13 ? N VAL L 13 O GLU B 107 ? O GLU L 107 AA5 2 3 O THR B 104 ? O THR L 104 N TYR B 88 ? N TYR L 88 AA5 3 4 O VAL B 87 ? O VAL L 87 N GLN B 40 ? N GLN L 40 AA5 4 5 N TRP B 37 ? N TRP L 37 O ILE B 50 ? O ILE L 50 AA6 1 2 N LYS C 22 ? N LYS R 356 O ALA C 63 ? O ALA R 397 AA6 2 3 N ILE C 68 ? N ILE R 402 O TYR C 174 ? O TYR R 508 AA6 3 4 O VAL C 177 ? O VAL R 511 N ILE C 100 ? N ILE R 434 AA6 4 5 O VAL C 99 ? O VAL R 433 N LYS C 44 ? N LYS R 378 AA7 1 2 N TYR C 119 ? N TYR R 453 O ARG C 159 ? O ARG R 493 AA8 1 2 N TYR C 139 ? N TYR R 473 O TYR C 155 ? O TYR R 489 # _atom_sites.entry_id 7WRZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 2 2 VAL VAL H . n A 1 2 GLN 2 3 3 GLN GLN H . n A 1 3 LEU 3 4 4 LEU LEU H . n A 1 4 ALA 4 5 5 ALA ALA H . n A 1 5 GLN 5 6 6 GLN GLN H . n A 1 6 SER 6 7 7 SER SER H . n A 1 7 GLY 7 8 8 GLY GLY H . n A 1 8 SER 8 9 9 SER SER H . n A 1 9 GLU 9 10 10 GLU GLU H . n A 1 10 LEU 10 11 11 LEU LEU H . n A 1 11 ARG 11 12 12 ARG ARG H . n A 1 12 LYS 12 13 13 LYS LYS H . n A 1 13 PRO 13 14 14 PRO PRO H . n A 1 14 GLY 14 15 15 GLY GLY H . n A 1 15 ALA 15 16 16 ALA ALA H . n A 1 16 SER 16 17 17 SER SER H . n A 1 17 VAL 17 18 18 VAL VAL H . n A 1 18 LYS 18 19 19 LYS LYS H . n A 1 19 VAL 19 20 20 VAL VAL H . n A 1 20 SER 20 21 21 SER SER H . n A 1 21 CYS 21 22 22 CYS CYS H . n A 1 22 ASP 22 23 23 ASP ASP H . n A 1 23 THR 23 24 24 THR THR H . n A 1 24 SER 24 25 25 SER SER H . n A 1 25 GLY 25 26 26 GLY GLY H . n A 1 26 HIS 26 27 27 HIS HIS H . n A 1 27 SER 27 28 28 SER SER H . n A 1 28 PHE 28 29 29 PHE PHE H . n A 1 29 THR 29 30 30 THR THR H . n A 1 30 SER 30 31 31 SER SER H . n A 1 31 ASN 31 32 32 ASN ASN H . n A 1 32 ALA 32 33 33 ALA ALA H . n A 1 33 ILE 33 34 34 ILE ILE H . n A 1 34 HIS 34 35 35 HIS HIS H . n A 1 35 TRP 35 36 36 TRP TRP H . n A 1 36 VAL 36 37 37 VAL VAL H . n A 1 37 ARG 37 38 38 ARG ARG H . n A 1 38 GLN 38 39 39 GLN GLN H . n A 1 39 ALA 39 40 40 ALA ALA H . n A 1 40 PRO 40 41 41 PRO PRO H . n A 1 41 GLY 41 42 42 GLY GLY H . n A 1 42 GLN 42 43 43 GLN GLN H . n A 1 43 GLY 43 44 44 GLY GLY H . n A 1 44 LEU 44 45 45 LEU LEU H . n A 1 45 GLU 45 46 46 GLU GLU H . n A 1 46 TRP 46 47 47 TRP TRP H . n A 1 47 MET 47 48 48 MET MET H . n A 1 48 GLY 48 49 49 GLY GLY H . n A 1 49 TRP 49 50 50 TRP TRP H . n A 1 50 ILE 50 51 51 ILE ILE H . n A 1 51 ASN 51 52 52 ASN ASN H . n A 1 52 THR 52 53 53 THR THR H . n A 1 53 ASP 53 54 54 ASP ASP H . n A 1 54 THR 54 55 55 THR THR H . n A 1 55 GLY 55 56 56 GLY GLY H . n A 1 56 THR 56 57 57 THR THR H . n A 1 57 PRO 57 58 58 PRO PRO H . n A 1 58 THR 58 59 59 THR THR H . n A 1 59 TYR 59 60 60 TYR TYR H . n A 1 60 ALA 60 61 61 ALA ALA H . n A 1 61 GLN 61 62 62 GLN GLN H . n A 1 62 GLY 62 63 63 GLY GLY H . n A 1 63 PHE 63 64 64 PHE PHE H . n A 1 64 THR 64 65 65 THR THR H . n A 1 65 GLY 65 66 66 GLY GLY H . n A 1 66 ARG 66 67 67 ARG ARG H . n A 1 67 PHE 67 68 68 PHE PHE H . n A 1 68 VAL 68 69 69 VAL VAL H . n A 1 69 PHE 69 70 70 PHE PHE H . n A 1 70 SER 70 71 71 SER SER H . n A 1 71 LEU 71 72 72 LEU LEU H . n A 1 72 ASP 72 73 73 ASP ASP H . n A 1 73 THR 73 74 74 THR THR H . n A 1 74 SER 74 75 75 SER SER H . n A 1 75 ALA 75 76 76 ALA ALA H . n A 1 76 ARG 76 77 77 ARG ARG H . n A 1 77 THR 77 78 78 THR THR H . n A 1 78 ALA 78 79 79 ALA ALA H . n A 1 79 TYR 79 80 80 TYR TYR H . n A 1 80 LEU 80 81 81 LEU LEU H . n A 1 81 GLN 81 82 82 GLN GLN H . n A 1 82 ILE 82 83 83 ILE ILE H . n A 1 83 SER 83 84 84 SER SER H . n A 1 84 SER 84 85 85 SER SER H . n A 1 85 LEU 85 86 86 LEU LEU H . n A 1 86 LYS 86 87 87 LYS LYS H . n A 1 87 ALA 87 88 88 ALA ALA H . n A 1 88 ASP 88 89 89 ASP ASP H . n A 1 89 ASP 89 90 90 ASP ASP H . n A 1 90 THR 90 91 91 THR THR H . n A 1 91 ALA 91 92 92 ALA ALA H . n A 1 92 VAL 92 93 93 VAL VAL H . n A 1 93 PHE 93 94 94 PHE PHE H . n A 1 94 TYR 94 95 95 TYR TYR H . n A 1 95 CYS 95 96 96 CYS CYS H . n A 1 96 ALA 96 97 97 ALA ALA H . n A 1 97 ARG 97 98 98 ARG ARG H . n A 1 98 GLU 98 99 99 GLU GLU H . n A 1 99 ARG 99 100 100 ARG ARG H . n A 1 100 ASP 100 101 101 ASP ASP H . n A 1 101 TYR 101 102 102 TYR TYR H . n A 1 102 SER 102 103 103 SER SER H . n A 1 103 ASP 103 104 104 ASP ASP H . n A 1 104 TYR 104 105 105 TYR TYR H . n A 1 105 PHE 105 106 106 PHE PHE H . n A 1 106 PHE 106 107 107 PHE PHE H . n A 1 107 ASP 107 108 108 ASP ASP H . n A 1 108 TYR 108 109 109 TYR TYR H . n A 1 109 TRP 109 110 110 TRP TRP H . n A 1 110 GLY 110 111 111 GLY GLY H . n A 1 111 GLN 111 112 112 GLN GLN H . n A 1 112 GLY 112 113 113 GLY GLY H . n A 1 113 THR 113 114 114 THR THR H . n A 1 114 LEU 114 115 115 LEU LEU H . n A 1 115 VAL 115 116 116 VAL VAL H . n A 1 116 THR 116 117 117 THR THR H . n A 1 117 VAL 117 118 118 VAL VAL H . n A 1 118 SER 118 119 119 SER SER H . n A 1 119 SER 119 120 120 SER SER H . n B 2 1 GLU 1 1 1 GLU GLU L . n B 2 2 VAL 2 2 2 VAL VAL L . n B 2 3 VAL 3 3 3 VAL VAL L . n B 2 4 MET 4 4 4 MET MET L . n B 2 5 THR 5 5 5 THR THR L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 SER 7 7 7 SER SER L . n B 2 8 PRO 8 8 8 PRO PRO L . n B 2 9 ALA 9 9 9 ALA ALA L . n B 2 10 SER 10 10 10 SER SER L . n B 2 11 LEU 11 11 11 LEU LEU L . n B 2 12 SER 12 12 12 SER SER L . n B 2 13 VAL 13 13 13 VAL VAL L . n B 2 14 SER 14 14 14 SER SER L . n B 2 15 PRO 15 15 15 PRO PRO L . n B 2 16 GLY 16 16 16 GLY GLY L . n B 2 17 GLU 17 17 17 GLU GLU L . n B 2 18 ARG 18 18 18 ARG ARG L . n B 2 19 ALA 19 19 19 ALA ALA L . n B 2 20 THR 20 20 20 THR THR L . n B 2 21 LEU 21 21 21 LEU LEU L . n B 2 22 SER 22 22 22 SER SER L . n B 2 23 CYS 23 23 23 CYS CYS L . n B 2 24 ARG 24 24 24 ARG ARG L . n B 2 25 ALA 25 25 25 ALA ALA L . n B 2 26 ARG 26 26 26 ARG ARG L . n B 2 27 ALA 27 27 27 ALA ALA L . n B 2 28 SER 28 28 28 SER SER L . n B 2 29 LEU 29 29 29 LEU LEU L . n B 2 30 GLY 30 30 30 GLY GLY L . n B 2 31 ILE 31 31 31 ILE ILE L . n B 2 32 SER 32 32 32 SER SER L . n B 2 33 THR 33 33 33 THR THR L . n B 2 34 ASP 34 34 34 ASP ASP L . n B 2 35 LEU 35 35 35 LEU LEU L . n B 2 36 ALA 36 36 36 ALA ALA L . n B 2 37 TRP 37 37 37 TRP TRP L . n B 2 38 TYR 38 38 38 TYR TYR L . n B 2 39 GLN 39 39 39 GLN GLN L . n B 2 40 GLN 40 40 40 GLN GLN L . n B 2 41 ARG 41 41 41 ARG ARG L . n B 2 42 PRO 42 42 42 PRO PRO L . n B 2 43 GLY 43 43 43 GLY GLY L . n B 2 44 GLN 44 44 44 GLN GLN L . n B 2 45 ALA 45 45 45 ALA ALA L . n B 2 46 PRO 46 46 46 PRO PRO L . n B 2 47 ARG 47 47 47 ARG ARG L . n B 2 48 LEU 48 48 48 LEU LEU L . n B 2 49 LEU 49 49 49 LEU LEU L . n B 2 50 ILE 50 50 50 ILE ILE L . n B 2 51 TYR 51 51 51 TYR TYR L . n B 2 52 GLY 52 52 52 GLY GLY L . n B 2 53 ALA 53 53 53 ALA ALA L . n B 2 54 SER 54 54 54 SER SER L . n B 2 55 THR 55 55 55 THR THR L . n B 2 56 ARG 56 56 56 ARG ARG L . n B 2 57 ALA 57 57 57 ALA ALA L . n B 2 58 THR 58 58 58 THR THR L . n B 2 59 GLY 59 59 59 GLY GLY L . n B 2 60 ILE 60 60 60 ILE ILE L . n B 2 61 PRO 61 61 61 PRO PRO L . n B 2 62 ALA 62 62 62 ALA ALA L . n B 2 63 ARG 63 63 63 ARG ARG L . n B 2 64 PHE 64 64 64 PHE PHE L . n B 2 65 SER 65 65 65 SER SER L . n B 2 66 GLY 66 66 66 GLY GLY L . n B 2 67 SER 67 67 67 SER SER L . n B 2 68 GLY 68 68 68 GLY GLY L . n B 2 69 SER 69 69 69 SER SER L . n B 2 70 GLY 70 70 70 GLY GLY L . n B 2 71 THR 71 71 71 THR THR L . n B 2 72 GLU 72 72 72 GLU GLU L . n B 2 73 PHE 73 73 73 PHE PHE L . n B 2 74 THR 74 74 74 THR THR L . n B 2 75 LEU 75 75 75 LEU LEU L . n B 2 76 THR 76 76 76 THR THR L . n B 2 77 ILE 77 77 77 ILE ILE L . n B 2 78 SER 78 78 78 SER SER L . n B 2 79 SER 79 79 79 SER SER L . n B 2 80 LEU 80 80 80 LEU LEU L . n B 2 81 GLN 81 81 81 GLN GLN L . n B 2 82 SER 82 82 82 SER SER L . n B 2 83 GLU 83 83 83 GLU GLU L . n B 2 84 ASP 84 84 84 ASP ASP L . n B 2 85 SER 85 85 85 SER SER L . n B 2 86 ALA 86 86 86 ALA ALA L . n B 2 87 VAL 87 87 87 VAL VAL L . n B 2 88 TYR 88 88 88 TYR TYR L . n B 2 89 TYR 89 89 89 TYR TYR L . n B 2 90 CYS 90 90 90 CYS CYS L . n B 2 91 GLN 91 91 91 GLN GLN L . n B 2 92 GLN 92 92 92 GLN GLN L . n B 2 93 TYR 93 93 93 TYR TYR L . n B 2 94 SER 94 94 94 SER SER L . n B 2 95 ASN 95 95 95 ASN ASN L . n B 2 96 TRP 96 96 96 TRP TRP L . n B 2 97 PRO 97 97 97 PRO PRO L . n B 2 98 LEU 98 98 98 LEU LEU L . n B 2 99 THR 99 99 99 THR THR L . n B 2 100 PHE 100 100 100 PHE PHE L . n B 2 101 GLY 101 101 101 GLY GLY L . n B 2 102 GLY 102 102 102 GLY GLY L . n B 2 103 GLY 103 103 103 GLY GLY L . n B 2 104 THR 104 104 104 THR THR L . n B 2 105 LYS 105 105 105 LYS LYS L . n B 2 106 VAL 106 106 106 VAL VAL L . n B 2 107 GLU 107 107 107 GLU GLU L . n B 2 108 ILE 108 108 108 ILE ILE L . n B 2 109 LYS 109 109 109 LYS LYS L . n C 3 1 LEU 1 335 335 LEU LEU R . n C 3 2 CYS 2 336 336 CYS CYS R . n C 3 3 PRO 3 337 337 PRO PRO R . n C 3 4 PHE 4 338 338 PHE PHE R . n C 3 5 ASP 5 339 339 ASP ASP R . n C 3 6 GLU 6 340 340 GLU GLU R . n C 3 7 VAL 7 341 341 VAL VAL R . n C 3 8 PHE 8 342 342 PHE PHE R . n C 3 9 ASN 9 343 343 ASN ASN R . n C 3 10 ALA 10 344 344 ALA ALA R . n C 3 11 THR 11 345 345 THR THR R . n C 3 12 ARG 12 346 346 ARG ARG R . n C 3 13 PHE 13 347 347 PHE PHE R . n C 3 14 ALA 14 348 348 ALA ALA R . n C 3 15 SER 15 349 349 SER SER R . n C 3 16 VAL 16 350 350 VAL VAL R . n C 3 17 TYR 17 351 351 TYR TYR R . n C 3 18 ALA 18 352 352 ALA ALA R . n C 3 19 TRP 19 353 353 TRP TRP R . n C 3 20 ASN 20 354 354 ASN ASN R . n C 3 21 ARG 21 355 355 ARG ARG R . n C 3 22 LYS 22 356 356 LYS LYS R . n C 3 23 ARG 23 357 357 ARG ARG R . n C 3 24 ILE 24 358 358 ILE ILE R . n C 3 25 SER 25 359 359 SER SER R . n C 3 26 ASN 26 360 360 ASN ASN R . n C 3 27 CYS 27 361 361 CYS CYS R . n C 3 28 VAL 28 362 362 VAL VAL R . n C 3 29 ALA 29 363 363 ALA ALA R . n C 3 30 ASP 30 364 364 ASP ASP R . n C 3 31 TYR 31 365 365 TYR TYR R . n C 3 32 SER 32 366 366 SER SER R . n C 3 33 VAL 33 367 367 VAL VAL R . n C 3 34 LEU 34 368 368 LEU LEU R . n C 3 35 TYR 35 369 369 TYR TYR R . n C 3 36 ASN 36 370 370 ASN ASN R . n C 3 37 LEU 37 371 371 LEU LEU R . n C 3 38 ALA 38 372 372 ALA ALA R . n C 3 39 PRO 39 373 373 PRO PRO R . n C 3 40 PHE 40 374 374 PHE PHE R . n C 3 41 PHE 41 375 375 PHE PHE R . n C 3 42 THR 42 376 376 THR THR R . n C 3 43 PHE 43 377 377 PHE PHE R . n C 3 44 LYS 44 378 378 LYS LYS R . n C 3 45 CYS 45 379 379 CYS CYS R . n C 3 46 TYR 46 380 380 TYR TYR R . n C 3 47 GLY 47 381 381 GLY GLY R . n C 3 48 VAL 48 382 382 VAL VAL R . n C 3 49 SER 49 383 383 SER SER R . n C 3 50 PRO 50 384 384 PRO PRO R . n C 3 51 THR 51 385 385 THR THR R . n C 3 52 LYS 52 386 386 LYS LYS R . n C 3 53 LEU 53 387 387 LEU LEU R . n C 3 54 ASN 54 388 388 ASN ASN R . n C 3 55 ASP 55 389 389 ASP ASP R . n C 3 56 LEU 56 390 390 LEU LEU R . n C 3 57 CYS 57 391 391 CYS CYS R . n C 3 58 PHE 58 392 392 PHE PHE R . n C 3 59 THR 59 393 393 THR THR R . n C 3 60 ASN 60 394 394 ASN ASN R . n C 3 61 VAL 61 395 395 VAL VAL R . n C 3 62 TYR 62 396 396 TYR TYR R . n C 3 63 ALA 63 397 397 ALA ALA R . n C 3 64 ASP 64 398 398 ASP ASP R . n C 3 65 SER 65 399 399 SER SER R . n C 3 66 PHE 66 400 400 PHE PHE R . n C 3 67 VAL 67 401 401 VAL VAL R . n C 3 68 ILE 68 402 402 ILE ILE R . n C 3 69 ARG 69 403 403 ARG ARG R . n C 3 70 GLY 70 404 404 GLY GLY R . n C 3 71 ASP 71 405 405 ASP ASP R . n C 3 72 GLU 72 406 406 GLU GLU R . n C 3 73 VAL 73 407 407 VAL VAL R . n C 3 74 ARG 74 408 408 ARG ARG R . n C 3 75 GLN 75 409 409 GLN GLN R . n C 3 76 ILE 76 410 410 ILE ILE R . n C 3 77 ALA 77 411 411 ALA ALA R . n C 3 78 PRO 78 412 412 PRO PRO R . n C 3 79 GLY 79 413 413 GLY GLY R . n C 3 80 GLN 80 414 414 GLN GLN R . n C 3 81 THR 81 415 415 THR THR R . n C 3 82 GLY 82 416 416 GLY GLY R . n C 3 83 ASN 83 417 417 ASN ASN R . n C 3 84 ILE 84 418 418 ILE ILE R . n C 3 85 ALA 85 419 419 ALA ALA R . n C 3 86 ASP 86 420 420 ASP ASP R . n C 3 87 TYR 87 421 421 TYR TYR R . n C 3 88 ASN 88 422 422 ASN ASN R . n C 3 89 TYR 89 423 423 TYR TYR R . n C 3 90 LYS 90 424 424 LYS LYS R . n C 3 91 LEU 91 425 425 LEU LEU R . n C 3 92 PRO 92 426 426 PRO PRO R . n C 3 93 ASP 93 427 427 ASP ASP R . n C 3 94 ASP 94 428 428 ASP ASP R . n C 3 95 PHE 95 429 429 PHE PHE R . n C 3 96 THR 96 430 430 THR THR R . n C 3 97 GLY 97 431 431 GLY GLY R . n C 3 98 CYS 98 432 432 CYS CYS R . n C 3 99 VAL 99 433 433 VAL VAL R . n C 3 100 ILE 100 434 434 ILE ILE R . n C 3 101 ALA 101 435 435 ALA ALA R . n C 3 102 TRP 102 436 436 TRP TRP R . n C 3 103 ASN 103 437 437 ASN ASN R . n C 3 104 SER 104 438 438 SER SER R . n C 3 105 ASN 105 439 439 ASN ASN R . n C 3 106 LYS 106 440 440 LYS LYS R . n C 3 107 LEU 107 441 441 LEU LEU R . n C 3 108 ASP 108 442 442 ASP ASP R . n C 3 109 SER 109 443 443 SER SER R . n C 3 110 LYS 110 444 444 LYS LYS R . n C 3 111 VAL 111 445 445 VAL VAL R . n C 3 112 SER 112 446 446 SER SER R . n C 3 113 GLY 113 447 447 GLY GLY R . n C 3 114 ASN 114 448 448 ASN ASN R . n C 3 115 TYR 115 449 449 TYR TYR R . n C 3 116 ASN 116 450 450 ASN ASN R . n C 3 117 TYR 117 451 451 TYR TYR R . n C 3 118 LEU 118 452 452 LEU LEU R . n C 3 119 TYR 119 453 453 TYR TYR R . n C 3 120 ARG 120 454 454 ARG ARG R . n C 3 121 LEU 121 455 455 LEU LEU R . n C 3 122 PHE 122 456 456 PHE PHE R . n C 3 123 ARG 123 457 457 ARG ARG R . n C 3 124 LYS 124 458 458 LYS LYS R . n C 3 125 SER 125 459 459 SER SER R . n C 3 126 ASN 126 460 460 ASN ASN R . n C 3 127 LEU 127 461 461 LEU LEU R . n C 3 128 LYS 128 462 462 LYS LYS R . n C 3 129 PRO 129 463 463 PRO PRO R . n C 3 130 PHE 130 464 464 PHE PHE R . n C 3 131 GLU 131 465 465 GLU GLU R . n C 3 132 ARG 132 466 466 ARG ARG R . n C 3 133 ASP 133 467 467 ASP ASP R . n C 3 134 ILE 134 468 468 ILE ILE R . n C 3 135 SER 135 469 469 SER SER R . n C 3 136 THR 136 470 470 THR THR R . n C 3 137 GLU 137 471 471 GLU GLU R . n C 3 138 ILE 138 472 472 ILE ILE R . n C 3 139 TYR 139 473 473 TYR TYR R . n C 3 140 GLN 140 474 474 GLN GLN R . n C 3 141 ALA 141 475 475 ALA ALA R . n C 3 142 GLY 142 476 476 GLY GLY R . n C 3 143 ASN 143 477 477 ASN ASN R . n C 3 144 LYS 144 478 478 LYS LYS R . n C 3 145 PRO 145 479 479 PRO PRO R . n C 3 146 CYS 146 480 480 CYS CYS R . n C 3 147 ASN 147 481 481 ASN ASN R . n C 3 148 GLY 148 482 482 GLY GLY R . n C 3 149 VAL 149 483 483 VAL VAL R . n C 3 150 ALA 150 484 484 ALA ALA R . n C 3 151 GLY 151 485 485 GLY GLY R . n C 3 152 PHE 152 486 486 PHE PHE R . n C 3 153 ASN 153 487 487 ASN ASN R . n C 3 154 CYS 154 488 488 CYS CYS R . n C 3 155 TYR 155 489 489 TYR TYR R . n C 3 156 PHE 156 490 490 PHE PHE R . n C 3 157 PRO 157 491 491 PRO PRO R . n C 3 158 LEU 158 492 492 LEU LEU R . n C 3 159 ARG 159 493 493 ARG ARG R . n C 3 160 SER 160 494 494 SER SER R . n C 3 161 TYR 161 495 495 TYR TYR R . n C 3 162 SER 162 496 496 SER SER R . n C 3 163 PHE 163 497 497 PHE PHE R . n C 3 164 ARG 164 498 498 ARG ARG R . n C 3 165 PRO 165 499 499 PRO PRO R . n C 3 166 THR 166 500 500 THR THR R . n C 3 167 TYR 167 501 501 TYR TYR R . n C 3 168 GLY 168 502 502 GLY GLY R . n C 3 169 VAL 169 503 503 VAL VAL R . n C 3 170 GLY 170 504 504 GLY GLY R . n C 3 171 HIS 171 505 505 HIS HIS R . n C 3 172 GLN 172 506 506 GLN GLN R . n C 3 173 PRO 173 507 507 PRO PRO R . n C 3 174 TYR 174 508 508 TYR TYR R . n C 3 175 ARG 175 509 509 ARG ARG R . n C 3 176 VAL 176 510 510 VAL VAL R . n C 3 177 VAL 177 511 511 VAL VAL R . n C 3 178 VAL 178 512 512 VAL VAL R . n C 3 179 LEU 179 513 513 LEU LEU R . n C 3 180 SER 180 514 514 SER SER R . n C 3 181 PHE 181 515 515 PHE PHE R . n C 3 182 GLU 182 516 516 GLU GLU R . n C 3 183 LEU 183 517 ? ? ? R . n C 3 184 LEU 184 518 ? ? ? R . n C 3 185 HIS 185 519 ? ? ? R . n C 3 186 ALA 186 520 ? ? ? R . n C 3 187 PRO 187 521 ? ? ? R . n C 3 188 ALA 188 522 ? ? ? R . n C 3 189 THR 189 523 ? ? ? R . n C 3 190 VAL 190 524 524 VAL VAL R . n C 3 191 CYS 191 525 525 CYS CYS R . n C 3 192 GLY 192 526 526 GLY GLY R . n C 3 193 LYS 193 527 527 LYS LYS R . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email 1801110460@pku.edu.cn _pdbx_contact_author.name_first Zhiying _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5690-9796 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-22 2 'Structure model' 1 1 2022-07-13 3 'Structure model' 1 2 2022-08-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7WRZ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7WRZ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WRZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 2765 _em_3d_reconstruction.resolution 3.26 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Local resolution of BD55-5840 Fab and SARS-COV2 Omicron RBD' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7WRZ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name OTHER _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WRZ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WRZ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 25 ? ? -64.73 3.28 2 1 THR H 30 ? ? -96.07 55.99 3 1 SER L 32 ? ? 60.41 63.91 4 1 TYR L 93 ? ? -99.06 56.46 5 1 ASN R 370 ? ? -93.28 49.76 6 1 PHE R 377 ? ? -103.71 78.02 7 1 PHE R 464 ? ? 59.98 19.15 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TRP _pdbx_validate_peptide_omega.auth_asym_id_1 L _pdbx_validate_peptide_omega.auth_seq_id_1 96 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 L _pdbx_validate_peptide_omega.auth_seq_id_2 97 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 134.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 R LYS 527 ? CG ? C LYS 193 CG 2 1 Y 1 R LYS 527 ? CD ? C LYS 193 CD 3 1 Y 1 R LYS 527 ? CE ? C LYS 193 CE 4 1 Y 1 R LYS 527 ? NZ ? C LYS 193 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 R LEU 517 ? C LEU 183 2 1 Y 1 R LEU 518 ? C LEU 184 3 1 Y 1 R HIS 519 ? C HIS 185 4 1 Y 1 R ALA 520 ? C ALA 186 5 1 Y 1 R PRO 521 ? C PRO 187 6 1 Y 1 R ALA 522 ? C ALA 188 7 1 Y 1 R THR 523 ? C THR 189 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.07 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 C NAG 1 C NAG 1 n D 4 NAG 2 C NAG 2 C NAG 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #