data_7WS2 # _entry.id 7WS2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7WS2 pdb_00007ws2 10.2210/pdb7ws2/pdb WWPDB D_1300027333 ? ? EMDB EMD-32741 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development' _pdbx_database_related.db_id EMD-32741 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7WS2 _pdbx_database_status.recvd_initial_deposition_date 2022-01-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guo, H.' 1 0000-0001-5213-9600 'Gao, Y.' 2 0000-0002-0364-6427 'Ji, X.' 3 0000-0002-0801-8825 'Yang, H.' 4 0000-0002-1875-3268 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 39 _citation.language ? _citation.page_first 110770 _citation.page_last 110770 _citation.title 'Structures of Omicron spike complexes and implications for neutralizing antibody development.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2022.110770 _citation.pdbx_database_id_PubMed 35477022 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, H.' 1 ? primary 'Gao, Y.' 2 ? primary 'Li, T.' 3 ? primary 'Li, T.' 4 ? primary 'Lu, Y.' 5 ? primary 'Zheng, L.' 6 ? primary 'Liu, Y.' 7 ? primary 'Yang, T.' 8 ? primary 'Luo, F.' 9 ? primary 'Song, S.' 10 ? primary 'Wang, W.' 11 ? primary 'Yang, X.' 12 ? primary 'Nguyen, H.C.' 13 ? primary 'Zhang, H.' 14 ? primary 'Huang, A.' 15 ? primary 'Jin, A.' 16 ? primary 'Yang, H.' 17 ? primary 'Rao, Z.' 18 ? primary 'Ji, X.' 19 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7WS2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '510A5 light chain' 11680.938 1 ? ? ? ? 2 polymer man 'Spike protein S1' 22446.193 1 ? ? RBD ? 3 polymer man '510A5 heavy chain' 13586.025 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWFQHKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSTPPYTFGQGTKLEIK ; ;DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWFQHKPGKAPKLLIYGASSLQSGVPSRFSGSGSGTDFTLTISSLQP EDFATYYCQQSYSTPPYTFGQGTKLEIK ; D ? 2 'polypeptide(L)' no no ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; A ? 3 'polypeptide(L)' no no ;EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSDSIDYADSVKGRFTISRDNAKNSLY LQMNSLRAEDTALYYCAKDRGYEILTPASFDYWGQGTLVTVSS ; ;EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSDSIDYADSVKGRFTISRDNAKNSLY LQMNSLRAEDTALYYCAKDRGYEILTPASFDYWGQGTLVTVSS ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 GLN n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 SER n 1 10 SER n 1 11 LEU n 1 12 SER n 1 13 ALA n 1 14 SER n 1 15 VAL n 1 16 GLY n 1 17 ASP n 1 18 ARG n 1 19 VAL n 1 20 THR n 1 21 ILE n 1 22 THR n 1 23 CYS n 1 24 ARG n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 SER n 1 29 ILE n 1 30 SER n 1 31 SER n 1 32 TYR n 1 33 LEU n 1 34 ASN n 1 35 TRP n 1 36 PHE n 1 37 GLN n 1 38 HIS n 1 39 LYS n 1 40 PRO n 1 41 GLY n 1 42 LYS n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 LEU n 1 47 LEU n 1 48 ILE n 1 49 TYR n 1 50 GLY n 1 51 ALA n 1 52 SER n 1 53 SER n 1 54 LEU n 1 55 GLN n 1 56 SER n 1 57 GLY n 1 58 VAL n 1 59 PRO n 1 60 SER n 1 61 ARG n 1 62 PHE n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 THR n 1 70 ASP n 1 71 PHE n 1 72 THR n 1 73 LEU n 1 74 THR n 1 75 ILE n 1 76 SER n 1 77 SER n 1 78 LEU n 1 79 GLN n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 PHE n 1 84 ALA n 1 85 THR n 1 86 TYR n 1 87 TYR n 1 88 CYS n 1 89 GLN n 1 90 GLN n 1 91 SER n 1 92 TYR n 1 93 SER n 1 94 THR n 1 95 PRO n 1 96 PRO n 1 97 TYR n 1 98 THR n 1 99 PHE n 1 100 GLY n 1 101 GLN n 1 102 GLY n 1 103 THR n 1 104 LYS n 1 105 LEU n 1 106 GLU n 1 107 ILE n 1 108 LYS n 2 1 ASN n 2 2 ILE n 2 3 THR n 2 4 ASN n 2 5 LEU n 2 6 CYS n 2 7 PRO n 2 8 PHE n 2 9 GLY n 2 10 GLU n 2 11 VAL n 2 12 PHE n 2 13 ASN n 2 14 ALA n 2 15 THR n 2 16 ARG n 2 17 PHE n 2 18 ALA n 2 19 SER n 2 20 VAL n 2 21 TYR n 2 22 ALA n 2 23 TRP n 2 24 ASN n 2 25 ARG n 2 26 LYS n 2 27 ARG n 2 28 ILE n 2 29 SER n 2 30 ASN n 2 31 CYS n 2 32 VAL n 2 33 ALA n 2 34 ASP n 2 35 TYR n 2 36 SER n 2 37 VAL n 2 38 LEU n 2 39 TYR n 2 40 ASN n 2 41 SER n 2 42 ALA n 2 43 SER n 2 44 PHE n 2 45 SER n 2 46 THR n 2 47 PHE n 2 48 LYS n 2 49 CYS n 2 50 TYR n 2 51 GLY n 2 52 VAL n 2 53 SER n 2 54 PRO n 2 55 THR n 2 56 LYS n 2 57 LEU n 2 58 ASN n 2 59 ASP n 2 60 LEU n 2 61 CYS n 2 62 PHE n 2 63 THR n 2 64 ASN n 2 65 VAL n 2 66 TYR n 2 67 ALA n 2 68 ASP n 2 69 SER n 2 70 PHE n 2 71 VAL n 2 72 ILE n 2 73 ARG n 2 74 GLY n 2 75 ASP n 2 76 GLU n 2 77 VAL n 2 78 ARG n 2 79 GLN n 2 80 ILE n 2 81 ALA n 2 82 PRO n 2 83 GLY n 2 84 GLN n 2 85 THR n 2 86 GLY n 2 87 LYS n 2 88 ILE n 2 89 ALA n 2 90 ASP n 2 91 TYR n 2 92 ASN n 2 93 TYR n 2 94 LYS n 2 95 LEU n 2 96 PRO n 2 97 ASP n 2 98 ASP n 2 99 PHE n 2 100 THR n 2 101 GLY n 2 102 CYS n 2 103 VAL n 2 104 ILE n 2 105 ALA n 2 106 TRP n 2 107 ASN n 2 108 SER n 2 109 ASN n 2 110 ASN n 2 111 LEU n 2 112 ASP n 2 113 SER n 2 114 LYS n 2 115 VAL n 2 116 GLY n 2 117 GLY n 2 118 ASN n 2 119 TYR n 2 120 ASN n 2 121 TYR n 2 122 LEU n 2 123 TYR n 2 124 ARG n 2 125 LEU n 2 126 PHE n 2 127 ARG n 2 128 LYS n 2 129 SER n 2 130 ASN n 2 131 LEU n 2 132 LYS n 2 133 PRO n 2 134 PHE n 2 135 GLU n 2 136 ARG n 2 137 ASP n 2 138 ILE n 2 139 SER n 2 140 THR n 2 141 GLU n 2 142 ILE n 2 143 TYR n 2 144 GLN n 2 145 ALA n 2 146 GLY n 2 147 SER n 2 148 THR n 2 149 PRO n 2 150 CYS n 2 151 ASN n 2 152 GLY n 2 153 VAL n 2 154 GLU n 2 155 GLY n 2 156 PHE n 2 157 ASN n 2 158 CYS n 2 159 TYR n 2 160 PHE n 2 161 PRO n 2 162 LEU n 2 163 GLN n 2 164 SER n 2 165 TYR n 2 166 GLY n 2 167 PHE n 2 168 GLN n 2 169 PRO n 2 170 THR n 2 171 ASN n 2 172 GLY n 2 173 VAL n 2 174 GLY n 2 175 TYR n 2 176 GLN n 2 177 PRO n 2 178 TYR n 2 179 ARG n 2 180 VAL n 2 181 VAL n 2 182 VAL n 2 183 LEU n 2 184 SER n 2 185 PHE n 2 186 GLU n 2 187 LEU n 2 188 LEU n 2 189 HIS n 2 190 ALA n 2 191 PRO n 2 192 ALA n 2 193 THR n 2 194 VAL n 2 195 CYS n 2 196 GLY n 2 197 PRO n 2 198 LYS n 2 199 LYS n 2 200 SER n 3 1 GLU n 3 2 VAL n 3 3 GLN n 3 4 LEU n 3 5 VAL n 3 6 GLU n 3 7 SER n 3 8 GLY n 3 9 GLY n 3 10 GLY n 3 11 LEU n 3 12 VAL n 3 13 GLN n 3 14 PRO n 3 15 GLY n 3 16 ARG n 3 17 SER n 3 18 LEU n 3 19 ARG n 3 20 LEU n 3 21 SER n 3 22 CYS n 3 23 ALA n 3 24 ALA n 3 25 SER n 3 26 GLY n 3 27 PHE n 3 28 THR n 3 29 PHE n 3 30 ASP n 3 31 ASP n 3 32 TYR n 3 33 ALA n 3 34 MET n 3 35 HIS n 3 36 TRP n 3 37 VAL n 3 38 ARG n 3 39 GLN n 3 40 ALA n 3 41 PRO n 3 42 GLY n 3 43 LYS n 3 44 GLY n 3 45 LEU n 3 46 GLU n 3 47 TRP n 3 48 VAL n 3 49 SER n 3 50 GLY n 3 51 ILE n 3 52 SER n 3 53 TRP n 3 54 ASN n 3 55 SER n 3 56 ASP n 3 57 SER n 3 58 ILE n 3 59 ASP n 3 60 TYR n 3 61 ALA n 3 62 ASP n 3 63 SER n 3 64 VAL n 3 65 LYS n 3 66 GLY n 3 67 ARG n 3 68 PHE n 3 69 THR n 3 70 ILE n 3 71 SER n 3 72 ARG n 3 73 ASP n 3 74 ASN n 3 75 ALA n 3 76 LYS n 3 77 ASN n 3 78 SER n 3 79 LEU n 3 80 TYR n 3 81 LEU n 3 82 GLN n 3 83 MET n 3 84 ASN n 3 85 SER n 3 86 LEU n 3 87 ARG n 3 88 ALA n 3 89 GLU n 3 90 ASP n 3 91 THR n 3 92 ALA n 3 93 LEU n 3 94 TYR n 3 95 TYR n 3 96 CYS n 3 97 ALA n 3 98 LYS n 3 99 ASP n 3 100 ARG n 3 101 GLY n 3 102 TYR n 3 103 GLU n 3 104 ILE n 3 105 LEU n 3 106 THR n 3 107 PRO n 3 108 ALA n 3 109 SER n 3 110 PHE n 3 111 ASP n 3 112 TYR n 3 113 TRP n 3 114 GLY n 3 115 GLN n 3 116 GLY n 3 117 THR n 3 118 LEU n 3 119 VAL n 3 120 THR n 3 121 VAL n 3 122 SER n 3 123 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 108 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 200 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 123 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7WS2 7WS2 ? 1 ? 1 2 UNP SPIKE_SARS2 P0DTC2 ? 2 ;NITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQI APGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYF PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 331 3 PDB 7WS2 7WS2 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7WS2 D 1 ? 108 ? 7WS2 1 ? 108 ? 1 108 2 2 7WS2 A 1 ? 200 ? P0DTC2 331 ? 530 ? 331 530 3 3 7WS2 E 1 ? 123 ? 7WS2 1 ? 123 ? 1 123 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7WS2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7WS2 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3439 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.512 ? 4675 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.322 ? 477 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.042 ? 501 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 608 ? f_plane_restr ? ? # _struct.entry_id 7WS2 _struct.title 'Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development' _struct.pdbx_structure_determination_methodology ? _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7WS2 _struct_keywords.text 'COVID-19, spike glycoprotein, virus, VIRAL PROTEIN, antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE B 8 ? ASN B 13 ? PHE A 338 ASN A 343 1 ? 6 HELX_P HELX_P2 AA2 TYR B 35 ? SER B 41 ? TYR A 365 SER A 371 1 ? 7 HELX_P HELX_P3 AA3 SER B 53 ? ASP B 59 ? SER A 383 ASP A 389 5 ? 7 HELX_P HELX_P4 AA4 GLY B 74 ? ILE B 80 ? GLY A 404 ILE A 410 5 ? 7 HELX_P HELX_P5 AA5 GLY B 86 ? ASN B 92 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P6 AA6 GLY B 172 ? GLN B 176 ? GLY A 502 GLN A 506 5 ? 5 HELX_P HELX_P7 AA7 THR C 28 ? TYR C 32 ? THR E 28 TYR E 32 5 ? 5 HELX_P HELX_P8 AA8 ASP C 62 ? LYS C 65 ? ASP E 62 LYS E 65 5 ? 4 HELX_P HELX_P9 AA9 ARG C 87 ? THR C 91 ? ARG E 87 THR E 91 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 88 SG ? ? D CYS 23 D CYS 88 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 31 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf3 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 102 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? B CYS 61 SG ? ? ? 1_555 B CYS 195 SG ? ? A CYS 391 A CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? B CYS 150 SG ? ? ? 1_555 B CYS 158 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf6 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 96 SG ? ? E CYS 22 E CYS 96 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 4 ? AA8 ? 2 ? AA9 ? 5 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 4 ? GLN A 6 ? MET D 4 GLN D 6 AA1 2 VAL A 19 ? ALA A 25 ? VAL D 19 ALA D 25 AA1 3 ASP A 70 ? ILE A 75 ? ASP D 70 ILE D 75 AA1 4 SER A 63 ? SER A 67 ? SER D 63 SER D 67 AA2 1 SER A 10 ? LEU A 11 ? SER D 10 LEU D 11 AA2 2 LYS A 104 ? LEU A 105 ? LYS D 104 LEU D 105 AA3 1 SER A 53 ? LEU A 54 ? SER D 53 LEU D 54 AA3 2 LYS A 45 ? TYR A 49 ? LYS D 45 TYR D 49 AA3 3 LEU A 33 ? HIS A 38 ? LEU D 33 HIS D 38 AA3 4 THR A 85 ? GLN A 90 ? THR D 85 GLN D 90 AA3 5 THR A 98 ? PHE A 99 ? THR D 98 PHE D 99 AA4 1 LYS B 26 ? ILE B 28 ? LYS A 356 ILE A 358 AA4 2 ASN B 64 ? ILE B 72 ? ASN A 394 ILE A 402 AA4 3 TYR B 178 ? GLU B 186 ? TYR A 508 GLU A 516 AA4 4 GLY B 101 ? ASN B 107 ? GLY A 431 ASN A 437 AA4 5 THR B 46 ? TYR B 50 ? THR A 376 TYR A 380 AA5 1 CYS B 31 ? VAL B 32 ? CYS A 361 VAL A 362 AA5 2 VAL B 194 ? CYS B 195 ? VAL A 524 CYS A 525 AA6 1 LEU B 122 ? ARG B 124 ? LEU A 452 ARG A 454 AA6 2 LEU B 162 ? SER B 164 ? LEU A 492 SER A 494 AA7 1 LEU C 4 ? SER C 7 ? LEU E 4 SER E 7 AA7 2 LEU C 18 ? ALA C 24 ? LEU E 18 ALA E 24 AA7 3 SER C 78 ? MET C 83 ? SER E 78 MET E 83 AA7 4 PHE C 68 ? ASP C 73 ? PHE E 68 ASP E 73 AA8 1 LEU C 11 ? VAL C 12 ? LEU E 11 VAL E 12 AA8 2 THR C 120 ? VAL C 121 ? THR E 120 VAL E 121 AA9 1 ILE C 58 ? TYR C 60 ? ILE E 58 TYR E 60 AA9 2 LEU C 45 ? ILE C 51 ? LEU E 45 ILE E 51 AA9 3 MET C 34 ? GLN C 39 ? MET E 34 GLN E 39 AA9 4 LEU C 93 ? ASP C 99 ? LEU E 93 ASP E 99 AA9 5 PHE C 110 ? TYR C 112 ? PHE E 110 TYR E 112 AB1 1 ILE C 58 ? TYR C 60 ? ILE E 58 TYR E 60 AB1 2 LEU C 45 ? ILE C 51 ? LEU E 45 ILE E 51 AB1 3 MET C 34 ? GLN C 39 ? MET E 34 GLN E 39 AB1 4 LEU C 93 ? ASP C 99 ? LEU E 93 ASP E 99 AB1 5 THR C 117 ? LEU C 118 ? THR E 117 LEU E 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 5 ? N THR D 5 O ARG A 24 ? O ARG D 24 AA1 2 3 N ILE A 21 ? N ILE D 21 O LEU A 73 ? O LEU D 73 AA1 3 4 O THR A 72 ? O THR D 72 N SER A 65 ? N SER D 65 AA2 1 2 N LEU A 11 ? N LEU D 11 O LYS A 104 ? O LYS D 104 AA3 1 2 O SER A 53 ? O SER D 53 N TYR A 49 ? N TYR D 49 AA3 2 3 O LYS A 45 ? O LYS D 45 N GLN A 37 ? N GLN D 37 AA3 3 4 N HIS A 38 ? N HIS D 38 O THR A 85 ? O THR D 85 AA3 4 5 N GLN A 90 ? N GLN D 90 O THR A 98 ? O THR D 98 AA4 1 2 N ILE B 28 ? N ILE A 358 O VAL B 65 ? O VAL A 395 AA4 2 3 N PHE B 70 ? N PHE A 400 O VAL B 180 ? O VAL A 510 AA4 3 4 O VAL B 181 ? O VAL A 511 N ILE B 104 ? N ILE A 434 AA4 4 5 O VAL B 103 ? O VAL A 433 N LYS B 48 ? N LYS A 378 AA5 1 2 N CYS B 31 ? N CYS A 361 O CYS B 195 ? O CYS A 525 AA6 1 2 N TYR B 123 ? N TYR A 453 O GLN B 163 ? O GLN A 493 AA7 1 2 N VAL C 5 ? N VAL E 5 O ALA C 23 ? O ALA E 23 AA7 2 3 N LEU C 20 ? N LEU E 20 O LEU C 81 ? O LEU E 81 AA7 3 4 O SER C 78 ? O SER E 78 N ASP C 73 ? N ASP E 73 AA8 1 2 N VAL C 12 ? N VAL E 12 O THR C 120 ? O THR E 120 AA9 1 2 O ASP C 59 ? O ASP E 59 N GLY C 50 ? N GLY E 50 AA9 2 3 O GLU C 46 ? O GLU E 46 N ARG C 38 ? N ARG E 38 AA9 3 4 N GLN C 39 ? N GLN E 39 O LEU C 93 ? O LEU E 93 AA9 4 5 N LYS C 98 ? N LYS E 98 O TYR C 112 ? O TYR E 112 AB1 1 2 O ASP C 59 ? O ASP E 59 N GLY C 50 ? N GLY E 50 AB1 2 3 O GLU C 46 ? O GLU E 46 N ARG C 38 ? N ARG E 38 AB1 3 4 N GLN C 39 ? N GLN E 39 O LEU C 93 ? O LEU E 93 AB1 4 5 N TYR C 94 ? N TYR E 94 O THR C 117 ? O THR E 117 # _atom_sites.entry_id 7WS2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP D . n A 1 2 ILE 2 2 2 ILE ILE D . n A 1 3 GLN 3 3 3 GLN GLN D . n A 1 4 MET 4 4 4 MET MET D . n A 1 5 THR 5 5 5 THR THR D . n A 1 6 GLN 6 6 6 GLN GLN D . n A 1 7 SER 7 7 7 SER SER D . n A 1 8 PRO 8 8 8 PRO PRO D . n A 1 9 SER 9 9 9 SER SER D . n A 1 10 SER 10 10 10 SER SER D . n A 1 11 LEU 11 11 11 LEU LEU D . n A 1 12 SER 12 12 12 SER SER D . n A 1 13 ALA 13 13 13 ALA ALA D . n A 1 14 SER 14 14 14 SER SER D . n A 1 15 VAL 15 15 15 VAL VAL D . n A 1 16 GLY 16 16 16 GLY GLY D . n A 1 17 ASP 17 17 17 ASP ASP D . n A 1 18 ARG 18 18 18 ARG ARG D . n A 1 19 VAL 19 19 19 VAL VAL D . n A 1 20 THR 20 20 20 THR THR D . n A 1 21 ILE 21 21 21 ILE ILE D . n A 1 22 THR 22 22 22 THR THR D . n A 1 23 CYS 23 23 23 CYS CYS D . n A 1 24 ARG 24 24 24 ARG ARG D . n A 1 25 ALA 25 25 25 ALA ALA D . n A 1 26 SER 26 26 26 SER SER D . n A 1 27 GLN 27 27 27 GLN GLN D . n A 1 28 SER 28 28 28 SER SER D . n A 1 29 ILE 29 29 29 ILE ILE D . n A 1 30 SER 30 30 30 SER SER D . n A 1 31 SER 31 31 31 SER SER D . n A 1 32 TYR 32 32 32 TYR TYR D . n A 1 33 LEU 33 33 33 LEU LEU D . n A 1 34 ASN 34 34 34 ASN ASN D . n A 1 35 TRP 35 35 35 TRP TRP D . n A 1 36 PHE 36 36 36 PHE PHE D . n A 1 37 GLN 37 37 37 GLN GLN D . n A 1 38 HIS 38 38 38 HIS HIS D . n A 1 39 LYS 39 39 39 LYS LYS D . n A 1 40 PRO 40 40 40 PRO PRO D . n A 1 41 GLY 41 41 41 GLY GLY D . n A 1 42 LYS 42 42 42 LYS LYS D . n A 1 43 ALA 43 43 43 ALA ALA D . n A 1 44 PRO 44 44 44 PRO PRO D . n A 1 45 LYS 45 45 45 LYS LYS D . n A 1 46 LEU 46 46 46 LEU LEU D . n A 1 47 LEU 47 47 47 LEU LEU D . n A 1 48 ILE 48 48 48 ILE ILE D . n A 1 49 TYR 49 49 49 TYR TYR D . n A 1 50 GLY 50 50 50 GLY GLY D . n A 1 51 ALA 51 51 51 ALA ALA D . n A 1 52 SER 52 52 52 SER SER D . n A 1 53 SER 53 53 53 SER SER D . n A 1 54 LEU 54 54 54 LEU LEU D . n A 1 55 GLN 55 55 55 GLN GLN D . n A 1 56 SER 56 56 56 SER SER D . n A 1 57 GLY 57 57 57 GLY GLY D . n A 1 58 VAL 58 58 58 VAL VAL D . n A 1 59 PRO 59 59 59 PRO PRO D . n A 1 60 SER 60 60 60 SER SER D . n A 1 61 ARG 61 61 61 ARG ARG D . n A 1 62 PHE 62 62 62 PHE PHE D . n A 1 63 SER 63 63 63 SER SER D . n A 1 64 GLY 64 64 64 GLY GLY D . n A 1 65 SER 65 65 65 SER SER D . n A 1 66 GLY 66 66 66 GLY GLY D . n A 1 67 SER 67 67 67 SER SER D . n A 1 68 GLY 68 68 68 GLY GLY D . n A 1 69 THR 69 69 69 THR THR D . n A 1 70 ASP 70 70 70 ASP ASP D . n A 1 71 PHE 71 71 71 PHE PHE D . n A 1 72 THR 72 72 72 THR THR D . n A 1 73 LEU 73 73 73 LEU LEU D . n A 1 74 THR 74 74 74 THR THR D . n A 1 75 ILE 75 75 75 ILE ILE D . n A 1 76 SER 76 76 76 SER SER D . n A 1 77 SER 77 77 77 SER SER D . n A 1 78 LEU 78 78 78 LEU LEU D . n A 1 79 GLN 79 79 79 GLN GLN D . n A 1 80 PRO 80 80 80 PRO PRO D . n A 1 81 GLU 81 81 81 GLU GLU D . n A 1 82 ASP 82 82 82 ASP ASP D . n A 1 83 PHE 83 83 83 PHE PHE D . n A 1 84 ALA 84 84 84 ALA ALA D . n A 1 85 THR 85 85 85 THR THR D . n A 1 86 TYR 86 86 86 TYR TYR D . n A 1 87 TYR 87 87 87 TYR TYR D . n A 1 88 CYS 88 88 88 CYS CYS D . n A 1 89 GLN 89 89 89 GLN GLN D . n A 1 90 GLN 90 90 90 GLN GLN D . n A 1 91 SER 91 91 91 SER SER D . n A 1 92 TYR 92 92 92 TYR TYR D . n A 1 93 SER 93 93 93 SER SER D . n A 1 94 THR 94 94 94 THR THR D . n A 1 95 PRO 95 95 95 PRO PRO D . n A 1 96 PRO 96 96 96 PRO PRO D . n A 1 97 TYR 97 97 97 TYR TYR D . n A 1 98 THR 98 98 98 THR THR D . n A 1 99 PHE 99 99 99 PHE PHE D . n A 1 100 GLY 100 100 100 GLY GLY D . n A 1 101 GLN 101 101 101 GLN GLN D . n A 1 102 GLY 102 102 102 GLY GLY D . n A 1 103 THR 103 103 103 THR THR D . n A 1 104 LYS 104 104 104 LYS LYS D . n A 1 105 LEU 105 105 105 LEU LEU D . n A 1 106 GLU 106 106 106 GLU GLU D . n A 1 107 ILE 107 107 107 ILE ILE D . n A 1 108 LYS 108 108 108 LYS LYS D . n B 2 1 ASN 1 331 331 ASN ASN A . n B 2 2 ILE 2 332 332 ILE ILE A . n B 2 3 THR 3 333 333 THR THR A . n B 2 4 ASN 4 334 334 ASN ASN A . n B 2 5 LEU 5 335 335 LEU LEU A . n B 2 6 CYS 6 336 336 CYS CYS A . n B 2 7 PRO 7 337 337 PRO PRO A . n B 2 8 PHE 8 338 338 PHE PHE A . n B 2 9 GLY 9 339 339 GLY GLY A . n B 2 10 GLU 10 340 340 GLU GLU A . n B 2 11 VAL 11 341 341 VAL VAL A . n B 2 12 PHE 12 342 342 PHE PHE A . n B 2 13 ASN 13 343 343 ASN ASN A . n B 2 14 ALA 14 344 344 ALA ALA A . n B 2 15 THR 15 345 345 THR THR A . n B 2 16 ARG 16 346 346 ARG ARG A . n B 2 17 PHE 17 347 347 PHE PHE A . n B 2 18 ALA 18 348 348 ALA ALA A . n B 2 19 SER 19 349 349 SER SER A . n B 2 20 VAL 20 350 350 VAL VAL A . n B 2 21 TYR 21 351 351 TYR TYR A . n B 2 22 ALA 22 352 352 ALA ALA A . n B 2 23 TRP 23 353 353 TRP TRP A . n B 2 24 ASN 24 354 354 ASN ASN A . n B 2 25 ARG 25 355 355 ARG ARG A . n B 2 26 LYS 26 356 356 LYS LYS A . n B 2 27 ARG 27 357 357 ARG ARG A . n B 2 28 ILE 28 358 358 ILE ILE A . n B 2 29 SER 29 359 359 SER SER A . n B 2 30 ASN 30 360 360 ASN ASN A . n B 2 31 CYS 31 361 361 CYS CYS A . n B 2 32 VAL 32 362 362 VAL VAL A . n B 2 33 ALA 33 363 363 ALA ALA A . n B 2 34 ASP 34 364 364 ASP ASP A . n B 2 35 TYR 35 365 365 TYR TYR A . n B 2 36 SER 36 366 366 SER SER A . n B 2 37 VAL 37 367 367 VAL VAL A . n B 2 38 LEU 38 368 368 LEU LEU A . n B 2 39 TYR 39 369 369 TYR TYR A . n B 2 40 ASN 40 370 370 ASN ASN A . n B 2 41 SER 41 371 371 SER SER A . n B 2 42 ALA 42 372 372 ALA ALA A . n B 2 43 SER 43 373 373 SER SER A . n B 2 44 PHE 44 374 374 PHE PHE A . n B 2 45 SER 45 375 375 SER SER A . n B 2 46 THR 46 376 376 THR THR A . n B 2 47 PHE 47 377 377 PHE PHE A . n B 2 48 LYS 48 378 378 LYS LYS A . n B 2 49 CYS 49 379 379 CYS CYS A . n B 2 50 TYR 50 380 380 TYR TYR A . n B 2 51 GLY 51 381 381 GLY GLY A . n B 2 52 VAL 52 382 382 VAL VAL A . n B 2 53 SER 53 383 383 SER SER A . n B 2 54 PRO 54 384 384 PRO PRO A . n B 2 55 THR 55 385 385 THR THR A . n B 2 56 LYS 56 386 386 LYS LYS A . n B 2 57 LEU 57 387 387 LEU LEU A . n B 2 58 ASN 58 388 388 ASN ASN A . n B 2 59 ASP 59 389 389 ASP ASP A . n B 2 60 LEU 60 390 390 LEU LEU A . n B 2 61 CYS 61 391 391 CYS CYS A . n B 2 62 PHE 62 392 392 PHE PHE A . n B 2 63 THR 63 393 393 THR THR A . n B 2 64 ASN 64 394 394 ASN ASN A . n B 2 65 VAL 65 395 395 VAL VAL A . n B 2 66 TYR 66 396 396 TYR TYR A . n B 2 67 ALA 67 397 397 ALA ALA A . n B 2 68 ASP 68 398 398 ASP ASP A . n B 2 69 SER 69 399 399 SER SER A . n B 2 70 PHE 70 400 400 PHE PHE A . n B 2 71 VAL 71 401 401 VAL VAL A . n B 2 72 ILE 72 402 402 ILE ILE A . n B 2 73 ARG 73 403 403 ARG ARG A . n B 2 74 GLY 74 404 404 GLY GLY A . n B 2 75 ASP 75 405 405 ASP ASP A . n B 2 76 GLU 76 406 406 GLU GLU A . n B 2 77 VAL 77 407 407 VAL VAL A . n B 2 78 ARG 78 408 408 ARG ARG A . n B 2 79 GLN 79 409 409 GLN GLN A . n B 2 80 ILE 80 410 410 ILE ILE A . n B 2 81 ALA 81 411 411 ALA ALA A . n B 2 82 PRO 82 412 412 PRO PRO A . n B 2 83 GLY 83 413 413 GLY GLY A . n B 2 84 GLN 84 414 414 GLN GLN A . n B 2 85 THR 85 415 415 THR THR A . n B 2 86 GLY 86 416 416 GLY GLY A . n B 2 87 LYS 87 417 417 LYS LYS A . n B 2 88 ILE 88 418 418 ILE ILE A . n B 2 89 ALA 89 419 419 ALA ALA A . n B 2 90 ASP 90 420 420 ASP ASP A . n B 2 91 TYR 91 421 421 TYR TYR A . n B 2 92 ASN 92 422 422 ASN ASN A . n B 2 93 TYR 93 423 423 TYR TYR A . n B 2 94 LYS 94 424 424 LYS LYS A . n B 2 95 LEU 95 425 425 LEU LEU A . n B 2 96 PRO 96 426 426 PRO PRO A . n B 2 97 ASP 97 427 427 ASP ASP A . n B 2 98 ASP 98 428 428 ASP ASP A . n B 2 99 PHE 99 429 429 PHE PHE A . n B 2 100 THR 100 430 430 THR THR A . n B 2 101 GLY 101 431 431 GLY GLY A . n B 2 102 CYS 102 432 432 CYS CYS A . n B 2 103 VAL 103 433 433 VAL VAL A . n B 2 104 ILE 104 434 434 ILE ILE A . n B 2 105 ALA 105 435 435 ALA ALA A . n B 2 106 TRP 106 436 436 TRP TRP A . n B 2 107 ASN 107 437 437 ASN ASN A . n B 2 108 SER 108 438 438 SER SER A . n B 2 109 ASN 109 439 439 ASN ASN A . n B 2 110 ASN 110 440 440 ASN ASN A . n B 2 111 LEU 111 441 441 LEU LEU A . n B 2 112 ASP 112 442 442 ASP ASP A . n B 2 113 SER 113 443 443 SER SER A . n B 2 114 LYS 114 444 444 LYS LYS A . n B 2 115 VAL 115 445 445 VAL VAL A . n B 2 116 GLY 116 446 446 GLY GLY A . n B 2 117 GLY 117 447 447 GLY GLY A . n B 2 118 ASN 118 448 448 ASN ASN A . n B 2 119 TYR 119 449 449 TYR TYR A . n B 2 120 ASN 120 450 450 ASN ASN A . n B 2 121 TYR 121 451 451 TYR TYR A . n B 2 122 LEU 122 452 452 LEU LEU A . n B 2 123 TYR 123 453 453 TYR TYR A . n B 2 124 ARG 124 454 454 ARG ARG A . n B 2 125 LEU 125 455 455 LEU LEU A . n B 2 126 PHE 126 456 456 PHE PHE A . n B 2 127 ARG 127 457 457 ARG ARG A . n B 2 128 LYS 128 458 458 LYS LYS A . n B 2 129 SER 129 459 459 SER SER A . n B 2 130 ASN 130 460 460 ASN ASN A . n B 2 131 LEU 131 461 461 LEU LEU A . n B 2 132 LYS 132 462 462 LYS LYS A . n B 2 133 PRO 133 463 463 PRO PRO A . n B 2 134 PHE 134 464 464 PHE PHE A . n B 2 135 GLU 135 465 465 GLU GLU A . n B 2 136 ARG 136 466 466 ARG ARG A . n B 2 137 ASP 137 467 467 ASP ASP A . n B 2 138 ILE 138 468 468 ILE ILE A . n B 2 139 SER 139 469 469 SER SER A . n B 2 140 THR 140 470 470 THR THR A . n B 2 141 GLU 141 471 471 GLU GLU A . n B 2 142 ILE 142 472 472 ILE ILE A . n B 2 143 TYR 143 473 473 TYR TYR A . n B 2 144 GLN 144 474 474 GLN GLN A . n B 2 145 ALA 145 475 475 ALA ALA A . n B 2 146 GLY 146 476 476 GLY GLY A . n B 2 147 SER 147 477 477 SER SER A . n B 2 148 THR 148 478 478 THR THR A . n B 2 149 PRO 149 479 479 PRO PRO A . n B 2 150 CYS 150 480 480 CYS CYS A . n B 2 151 ASN 151 481 481 ASN ASN A . n B 2 152 GLY 152 482 482 GLY GLY A . n B 2 153 VAL 153 483 483 VAL VAL A . n B 2 154 GLU 154 484 484 GLU GLU A . n B 2 155 GLY 155 485 485 GLY GLY A . n B 2 156 PHE 156 486 486 PHE PHE A . n B 2 157 ASN 157 487 487 ASN ASN A . n B 2 158 CYS 158 488 488 CYS CYS A . n B 2 159 TYR 159 489 489 TYR TYR A . n B 2 160 PHE 160 490 490 PHE PHE A . n B 2 161 PRO 161 491 491 PRO PRO A . n B 2 162 LEU 162 492 492 LEU LEU A . n B 2 163 GLN 163 493 493 GLN GLN A . n B 2 164 SER 164 494 494 SER SER A . n B 2 165 TYR 165 495 495 TYR TYR A . n B 2 166 GLY 166 496 496 GLY GLY A . n B 2 167 PHE 167 497 497 PHE PHE A . n B 2 168 GLN 168 498 498 GLN GLN A . n B 2 169 PRO 169 499 499 PRO PRO A . n B 2 170 THR 170 500 500 THR THR A . n B 2 171 ASN 171 501 501 ASN ASN A . n B 2 172 GLY 172 502 502 GLY GLY A . n B 2 173 VAL 173 503 503 VAL VAL A . n B 2 174 GLY 174 504 504 GLY GLY A . n B 2 175 TYR 175 505 505 TYR TYR A . n B 2 176 GLN 176 506 506 GLN GLN A . n B 2 177 PRO 177 507 507 PRO PRO A . n B 2 178 TYR 178 508 508 TYR TYR A . n B 2 179 ARG 179 509 509 ARG ARG A . n B 2 180 VAL 180 510 510 VAL VAL A . n B 2 181 VAL 181 511 511 VAL VAL A . n B 2 182 VAL 182 512 512 VAL VAL A . n B 2 183 LEU 183 513 513 LEU LEU A . n B 2 184 SER 184 514 514 SER SER A . n B 2 185 PHE 185 515 515 PHE PHE A . n B 2 186 GLU 186 516 516 GLU GLU A . n B 2 187 LEU 187 517 517 LEU LEU A . n B 2 188 LEU 188 518 518 LEU LEU A . n B 2 189 HIS 189 519 519 HIS HIS A . n B 2 190 ALA 190 520 520 ALA ALA A . n B 2 191 PRO 191 521 521 PRO PRO A . n B 2 192 ALA 192 522 522 ALA ALA A . n B 2 193 THR 193 523 523 THR THR A . n B 2 194 VAL 194 524 524 VAL VAL A . n B 2 195 CYS 195 525 525 CYS CYS A . n B 2 196 GLY 196 526 526 GLY GLY A . n B 2 197 PRO 197 527 527 PRO PRO A . n B 2 198 LYS 198 528 528 LYS LYS A . n B 2 199 LYS 199 529 529 LYS LYS A . n B 2 200 SER 200 530 530 SER SER A . n C 3 1 GLU 1 1 1 GLU GLU E . n C 3 2 VAL 2 2 2 VAL VAL E . n C 3 3 GLN 3 3 3 GLN GLN E . n C 3 4 LEU 4 4 4 LEU LEU E . n C 3 5 VAL 5 5 5 VAL VAL E . n C 3 6 GLU 6 6 6 GLU GLU E . n C 3 7 SER 7 7 7 SER SER E . n C 3 8 GLY 8 8 8 GLY GLY E . n C 3 9 GLY 9 9 9 GLY GLY E . n C 3 10 GLY 10 10 10 GLY GLY E . n C 3 11 LEU 11 11 11 LEU LEU E . n C 3 12 VAL 12 12 12 VAL VAL E . n C 3 13 GLN 13 13 13 GLN GLN E . n C 3 14 PRO 14 14 14 PRO PRO E . n C 3 15 GLY 15 15 15 GLY GLY E . n C 3 16 ARG 16 16 16 ARG ARG E . n C 3 17 SER 17 17 17 SER SER E . n C 3 18 LEU 18 18 18 LEU LEU E . n C 3 19 ARG 19 19 19 ARG ARG E . n C 3 20 LEU 20 20 20 LEU LEU E . n C 3 21 SER 21 21 21 SER SER E . n C 3 22 CYS 22 22 22 CYS CYS E . n C 3 23 ALA 23 23 23 ALA ALA E . n C 3 24 ALA 24 24 24 ALA ALA E . n C 3 25 SER 25 25 25 SER SER E . n C 3 26 GLY 26 26 26 GLY GLY E . n C 3 27 PHE 27 27 27 PHE PHE E . n C 3 28 THR 28 28 28 THR THR E . n C 3 29 PHE 29 29 29 PHE PHE E . n C 3 30 ASP 30 30 30 ASP ASP E . n C 3 31 ASP 31 31 31 ASP ASP E . n C 3 32 TYR 32 32 32 TYR TYR E . n C 3 33 ALA 33 33 33 ALA ALA E . n C 3 34 MET 34 34 34 MET MET E . n C 3 35 HIS 35 35 35 HIS HIS E . n C 3 36 TRP 36 36 36 TRP TRP E . n C 3 37 VAL 37 37 37 VAL VAL E . n C 3 38 ARG 38 38 38 ARG ARG E . n C 3 39 GLN 39 39 39 GLN GLN E . n C 3 40 ALA 40 40 40 ALA ALA E . n C 3 41 PRO 41 41 41 PRO PRO E . n C 3 42 GLY 42 42 42 GLY GLY E . n C 3 43 LYS 43 43 43 LYS LYS E . n C 3 44 GLY 44 44 44 GLY GLY E . n C 3 45 LEU 45 45 45 LEU LEU E . n C 3 46 GLU 46 46 46 GLU GLU E . n C 3 47 TRP 47 47 47 TRP TRP E . n C 3 48 VAL 48 48 48 VAL VAL E . n C 3 49 SER 49 49 49 SER SER E . n C 3 50 GLY 50 50 50 GLY GLY E . n C 3 51 ILE 51 51 51 ILE ILE E . n C 3 52 SER 52 52 52 SER SER E . n C 3 53 TRP 53 53 53 TRP TRP E . n C 3 54 ASN 54 54 54 ASN ASN E . n C 3 55 SER 55 55 55 SER SER E . n C 3 56 ASP 56 56 56 ASP ASP E . n C 3 57 SER 57 57 57 SER SER E . n C 3 58 ILE 58 58 58 ILE ILE E . n C 3 59 ASP 59 59 59 ASP ASP E . n C 3 60 TYR 60 60 60 TYR TYR E . n C 3 61 ALA 61 61 61 ALA ALA E . n C 3 62 ASP 62 62 62 ASP ASP E . n C 3 63 SER 63 63 63 SER SER E . n C 3 64 VAL 64 64 64 VAL VAL E . n C 3 65 LYS 65 65 65 LYS LYS E . n C 3 66 GLY 66 66 66 GLY GLY E . n C 3 67 ARG 67 67 67 ARG ARG E . n C 3 68 PHE 68 68 68 PHE PHE E . n C 3 69 THR 69 69 69 THR THR E . n C 3 70 ILE 70 70 70 ILE ILE E . n C 3 71 SER 71 71 71 SER SER E . n C 3 72 ARG 72 72 72 ARG ARG E . n C 3 73 ASP 73 73 73 ASP ASP E . n C 3 74 ASN 74 74 74 ASN ASN E . n C 3 75 ALA 75 75 75 ALA ALA E . n C 3 76 LYS 76 76 76 LYS LYS E . n C 3 77 ASN 77 77 77 ASN ASN E . n C 3 78 SER 78 78 78 SER SER E . n C 3 79 LEU 79 79 79 LEU LEU E . n C 3 80 TYR 80 80 80 TYR TYR E . n C 3 81 LEU 81 81 81 LEU LEU E . n C 3 82 GLN 82 82 82 GLN GLN E . n C 3 83 MET 83 83 83 MET MET E . n C 3 84 ASN 84 84 84 ASN ASN E . n C 3 85 SER 85 85 85 SER SER E . n C 3 86 LEU 86 86 86 LEU LEU E . n C 3 87 ARG 87 87 87 ARG ARG E . n C 3 88 ALA 88 88 88 ALA ALA E . n C 3 89 GLU 89 89 89 GLU GLU E . n C 3 90 ASP 90 90 90 ASP ASP E . n C 3 91 THR 91 91 91 THR THR E . n C 3 92 ALA 92 92 92 ALA ALA E . n C 3 93 LEU 93 93 93 LEU LEU E . n C 3 94 TYR 94 94 94 TYR TYR E . n C 3 95 TYR 95 95 95 TYR TYR E . n C 3 96 CYS 96 96 96 CYS CYS E . n C 3 97 ALA 97 97 97 ALA ALA E . n C 3 98 LYS 98 98 98 LYS LYS E . n C 3 99 ASP 99 99 99 ASP ASP E . n C 3 100 ARG 100 100 100 ARG ARG E . n C 3 101 GLY 101 101 101 GLY GLY E . n C 3 102 TYR 102 102 102 TYR TYR E . n C 3 103 GLU 103 103 103 GLU GLU E . n C 3 104 ILE 104 104 104 ILE ILE E . n C 3 105 LEU 105 105 105 LEU LEU E . n C 3 106 THR 106 106 106 THR THR E . n C 3 107 PRO 107 107 107 PRO PRO E . n C 3 108 ALA 108 108 108 ALA ALA E . n C 3 109 SER 109 109 109 SER SER E . n C 3 110 PHE 110 110 110 PHE PHE E . n C 3 111 ASP 111 111 111 ASP ASP E . n C 3 112 TYR 112 112 112 TYR TYR E . n C 3 113 TRP 113 113 113 TRP TRP E . n C 3 114 GLY 114 114 114 GLY GLY E . n C 3 115 GLN 115 115 115 GLN GLN E . n C 3 116 GLY 116 116 116 GLY GLY E . n C 3 117 THR 117 117 117 THR THR E . n C 3 118 LEU 118 118 118 LEU LEU E . n C 3 119 VAL 119 119 119 VAL VAL E . n C 3 120 THR 120 120 120 THR THR E . n C 3 121 VAL 121 121 121 VAL VAL E . n C 3 122 SER 122 122 122 SER SER E . n C 3 123 SER 123 123 123 SER SER E . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 yanght@shanghaitech.edu.cn Haitao Yang ? 'principal investigator/group leader' 0000-0002-1875-3268 4 xiaoyun.ji@nju.edu.cn Xiaoyun Ji ? 'principal investigator/group leader' 0000-0002-0801-8825 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-06-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7WS2 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7WS2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 230655 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'SARS-CoV-2 Spike glycoprotein complex with 510A5 Fab' 'MULTIPLE SOURCES' COMPLEX '1, 2, 3' ? ? 2 1 'SARS-CoV-2 Spike protein ectodomain' 'spike glycoprotein' RECOMBINANT COMPLEX 2 ? ? 3 1 'Fab fragment generated by proteolytic cleavage of IgG antibody' Fab RECOMBINANT COMPLEX 1,3 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7WS2 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7WS2 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7WS2 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER D 52 ? ? -140.77 40.10 2 1 PRO D 80 ? ? -64.48 5.09 3 1 ASN A 487 ? ? 69.76 -4.13 4 1 ASP E 90 ? ? -96.08 31.91 5 1 THR E 91 ? ? -96.22 33.22 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D LYS 108 ? CG ? A LYS 108 CG 2 1 Y 1 D LYS 108 ? CD ? A LYS 108 CD 3 1 Y 1 D LYS 108 ? CE ? A LYS 108 CE 4 1 Y 1 D LYS 108 ? NZ ? A LYS 108 NZ 5 1 Y 1 A HIS 519 ? CG ? B HIS 189 CG 6 1 Y 1 A HIS 519 ? ND1 ? B HIS 189 ND1 7 1 Y 1 A HIS 519 ? CD2 ? B HIS 189 CD2 8 1 Y 1 A HIS 519 ? CE1 ? B HIS 189 CE1 9 1 Y 1 A HIS 519 ? NE2 ? B HIS 189 NE2 10 1 Y 1 E LYS 43 ? CG ? C LYS 43 CG 11 1 Y 1 E LYS 43 ? CD ? C LYS 43 CD 12 1 Y 1 E LYS 43 ? CE ? C LYS 43 CE 13 1 Y 1 E LYS 43 ? NZ ? C LYS 43 NZ 14 1 Y 1 E LYS 76 ? CG ? C LYS 76 CG 15 1 Y 1 E LYS 76 ? CD ? C LYS 76 CD 16 1 Y 1 E LYS 76 ? CE ? C LYS 76 CE 17 1 Y 1 E LYS 76 ? NZ ? C LYS 76 NZ # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 2 ? ? 9606 ? ? 'Homo sapiens' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 HEK293 9606 'Homo sapiens' ? ? 3 2 HEK293 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country China _pdbx_audit_support.grant_number YDZX20213100001556 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #