HEADER ANTIMICROBIAL PROTEIN 09-FEB-22 7WUO TITLE UNRAVELLING STRUCTURE OF RIBOFLAVIN SYNTHASE FOR DESIGNING OF TITLE 2 POTENTIAL ANTI-BACTERIAL DRUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.5.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA KMETYI SEROVAR MALAYSIA STR. BEJO- SOURCE 3 ISO9; SOURCE 4 ORGANISM_TAXID: 1049970; SOURCE 5 GENE: EHQ67_13285; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOFLAVIN, ANTIBACTERIAL, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.N.A.M.ARIS,A.T.C.LEOW,T.MOTOMURA,M.A.JONET REVDAT 2 29-NOV-23 7WUO 1 REMARK REVDAT 1 15-JUN-22 7WUO 0 JRNL AUTH S.N.A.M.ARIS,R.N.Z.R.A.RAHMAN,M.S.M.ALI,M.A.JONET, JRNL AUTH 2 T.MOTOMURA,N.D.M.NOOR,F.M.SHARIFF,K.C.HSU,L.T.CHOR JRNL TITL UNRAVELING THE CRYSTAL STRUCTURE OF LEPTOSPIRA KMETYI JRNL TITL 2 RIBOFLAVIN SYNTHASE AND COMPUTATIONAL ANALYSES FOR POTENTIAL JRNL TITL 3 DEVELOPMENT OF NEW ANTIBACTERIALS JRNL REF J.MOL.STRUCT. 33420 2022 JRNL REFN ISSN 0022-2860 JRNL DOI 10.1016/J.MOLSTRUC.2022.133420 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 12554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 636 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 949 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -2.54000 REMARK 3 B33 (A**2) : 2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.526 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.401 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4688 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4392 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6349 ; 1.615 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10168 ; 1.251 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 8.193 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;33.415 ;22.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;18.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5219 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 201 B 1 201 5512 0.150 0.050 REMARK 3 2 A 1 201 C 1 201 5446 0.170 0.050 REMARK 3 3 B 1 201 C 1 201 5312 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : DEXTRIS 200K REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 V714N REMARK 200 DATA SCALING SOFTWARE : HKL-3000 V714N REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13224 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1I8D REMARK 200 REMARK 200 REMARK: BULLET SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1M MES REMARK 280 MONOHYDRATE (PH 6.5), 10% W/V PEG MME 5000, PH 8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 288.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.31600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.31600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.25000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.31600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.25000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.77950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.31600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 202 REMARK 465 VAL A 203 REMARK 465 PRO A 204 REMARK 465 ARG A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 LEU A 208 REMARK 465 GLU A 209 REMARK 465 LEU B 202 REMARK 465 VAL B 203 REMARK 465 PRO B 204 REMARK 465 ARG B 205 REMARK 465 GLY B 206 REMARK 465 SER B 207 REMARK 465 LEU B 208 REMARK 465 GLU B 209 REMARK 465 LEU C 202 REMARK 465 VAL C 203 REMARK 465 PRO C 204 REMARK 465 ARG C 205 REMARK 465 GLY C 206 REMARK 465 SER C 207 REMARK 465 LEU C 208 REMARK 465 GLU C 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 19 CG OD1 ND2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 109 CE NZ REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 117 CG CD OE1 OE2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ILE A 186 CD1 REMARK 470 LYS A 198 CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 GLU A 201 CB CG CD OE1 OE2 REMARK 470 ILE B 12 CD1 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 VAL B 31 CG1 CG2 REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 ASP B 34 CG OD1 OD2 REMARK 470 LEU B 35 CG CD1 CD2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 GLN B 195 OE1 NE2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS C 11 CD CE NZ REMARK 470 GLN C 16 CG CD OE1 NE2 REMARK 470 LYS C 29 CE NZ REMARK 470 LYS C 75 CD CE NZ REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 ARG C 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 117 CG CD OE1 OE2 REMARK 470 VAL C 121 CG1 CG2 REMARK 470 LYS C 157 CD CE NZ REMARK 470 GLU C 166 CG CD OE1 OE2 REMARK 470 LYS C 198 CD CE NZ REMARK 470 GLU C 201 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 92 65.09 -103.80 REMARK 500 HIS A 98 -156.02 -159.27 REMARK 500 LYS A 157 -0.01 80.19 REMARK 500 HIS B 98 -158.44 -145.72 REMARK 500 ASP B 179 2.55 88.63 REMARK 500 LYS B 200 38.21 -88.26 REMARK 500 ASN C 55 49.00 -164.61 REMARK 500 LYS C 157 2.19 83.09 REMARK 500 SER C 178 -119.65 45.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 180 ILE C 181 -144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND SHOULD BE POLYETHYLENEGLYCOL, BECAUSE POLYETHYLENEGLYCOL REMARK 600 HAS BEEN USED IN BOTH CRYSTALLIZATION FORMULATION AND AS A REMARK 600 CRYOPROTECTANT. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 301 DBREF1 7WUO A 1 201 UNP A0A7I0ICZ8_9LEPT DBREF2 7WUO A A0A7I0ICZ8 1 201 DBREF1 7WUO B 1 201 UNP A0A7I0ICZ8_9LEPT DBREF2 7WUO B A0A7I0ICZ8 1 201 DBREF1 7WUO C 1 201 UNP A0A7I0ICZ8_9LEPT DBREF2 7WUO C A0A7I0ICZ8 1 201 SEQADV 7WUO VAL A 31 UNP A0A7I0ICZ PHE 31 CONFLICT SEQADV 7WUO ALA A 120 UNP A0A7I0ICZ THR 120 CONFLICT SEQADV 7WUO PRO A 130 UNP A0A7I0ICZ SER 130 CONFLICT SEQADV 7WUO LEU A 202 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO VAL A 203 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO PRO A 204 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO ARG A 205 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLY A 206 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO SER A 207 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO LEU A 208 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLU A 209 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO VAL B 31 UNP A0A7I0ICZ PHE 31 CONFLICT SEQADV 7WUO ALA B 120 UNP A0A7I0ICZ THR 120 CONFLICT SEQADV 7WUO PRO B 130 UNP A0A7I0ICZ SER 130 CONFLICT SEQADV 7WUO LEU B 202 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO VAL B 203 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO PRO B 204 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO ARG B 205 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLY B 206 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO SER B 207 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO LEU B 208 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLU B 209 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO VAL C 31 UNP A0A7I0ICZ PHE 31 CONFLICT SEQADV 7WUO ALA C 120 UNP A0A7I0ICZ THR 120 CONFLICT SEQADV 7WUO PRO C 130 UNP A0A7I0ICZ SER 130 CONFLICT SEQADV 7WUO LEU C 202 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO VAL C 203 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO PRO C 204 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO ARG C 205 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLY C 206 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO SER C 207 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO LEU C 208 UNP A0A7I0ICZ EXPRESSION TAG SEQADV 7WUO GLU C 209 UNP A0A7I0ICZ EXPRESSION TAG SEQRES 1 A 209 MET PHE THR GLY LEU VAL GLU THR THR GLY LYS ILE LEU SEQRES 2 A 209 GLU ILE GLN GLU THR ASN GLU GLY ARG GLY PHE LEU VAL SEQRES 3 A 209 GLU THR LYS TRP VAL GLN PRO ASP LEU LYS LEU GLY ASP SEQRES 4 A 209 SER ILE SER VAL ASN GLY CYS CYS GLN THR VAL THR GLU SEQRES 5 A 209 PHE THR ASN GLU GLY SER ARG PHE ARG PHE TYR ALA SER SEQRES 6 A 209 PHE LYS THR LEU GLU LEU THR ASN PHE LYS PHE LEU LYS SEQRES 7 A 209 VAL GLY GLU GLU VAL ASN LEU GLU ARG SER ALA LEU PRO SEQRES 8 A 209 THR THR ARG LEU GLY GLY HIS LEU VAL SER GLY HIS VAL SEQRES 9 A 209 ASP GLY THR GLY LYS ILE LEU SER LYS GLU GLU ARG GLU SEQRES 10 A 209 GLY GLY ALA VAL ILE CYS TYR THR VAL GLN ASN ASP PRO SEQRES 11 A 209 SER LEU SER ARG TYR ILE ALA PRO ARG GLY SER ILE THR SEQRES 12 A 209 VAL ASP GLY ILE SER LEU THR VAL VAL ASP SER ARG PRO SEQRES 13 A 209 LYS GLU PHE ASP LEU VAL LEU ILE PRO GLU THR LEU LYS SEQRES 14 A 209 LYS THR ASN ALA LYS SER TRP ASN SER ASP THR ILE LEU SEQRES 15 A 209 ASN LEU GLU ILE ASP LEU VAL ALA ARG TYR LEU GLU GLN SEQRES 16 A 209 LEU LEU LYS SER LYS GLU LEU VAL PRO ARG GLY SER LEU SEQRES 17 A 209 GLU SEQRES 1 B 209 MET PHE THR GLY LEU VAL GLU THR THR GLY LYS ILE LEU SEQRES 2 B 209 GLU ILE GLN GLU THR ASN GLU GLY ARG GLY PHE LEU VAL SEQRES 3 B 209 GLU THR LYS TRP VAL GLN PRO ASP LEU LYS LEU GLY ASP SEQRES 4 B 209 SER ILE SER VAL ASN GLY CYS CYS GLN THR VAL THR GLU SEQRES 5 B 209 PHE THR ASN GLU GLY SER ARG PHE ARG PHE TYR ALA SER SEQRES 6 B 209 PHE LYS THR LEU GLU LEU THR ASN PHE LYS PHE LEU LYS SEQRES 7 B 209 VAL GLY GLU GLU VAL ASN LEU GLU ARG SER ALA LEU PRO SEQRES 8 B 209 THR THR ARG LEU GLY GLY HIS LEU VAL SER GLY HIS VAL SEQRES 9 B 209 ASP GLY THR GLY LYS ILE LEU SER LYS GLU GLU ARG GLU SEQRES 10 B 209 GLY GLY ALA VAL ILE CYS TYR THR VAL GLN ASN ASP PRO SEQRES 11 B 209 SER LEU SER ARG TYR ILE ALA PRO ARG GLY SER ILE THR SEQRES 12 B 209 VAL ASP GLY ILE SER LEU THR VAL VAL ASP SER ARG PRO SEQRES 13 B 209 LYS GLU PHE ASP LEU VAL LEU ILE PRO GLU THR LEU LYS SEQRES 14 B 209 LYS THR ASN ALA LYS SER TRP ASN SER ASP THR ILE LEU SEQRES 15 B 209 ASN LEU GLU ILE ASP LEU VAL ALA ARG TYR LEU GLU GLN SEQRES 16 B 209 LEU LEU LYS SER LYS GLU LEU VAL PRO ARG GLY SER LEU SEQRES 17 B 209 GLU SEQRES 1 C 209 MET PHE THR GLY LEU VAL GLU THR THR GLY LYS ILE LEU SEQRES 2 C 209 GLU ILE GLN GLU THR ASN GLU GLY ARG GLY PHE LEU VAL SEQRES 3 C 209 GLU THR LYS TRP VAL GLN PRO ASP LEU LYS LEU GLY ASP SEQRES 4 C 209 SER ILE SER VAL ASN GLY CYS CYS GLN THR VAL THR GLU SEQRES 5 C 209 PHE THR ASN GLU GLY SER ARG PHE ARG PHE TYR ALA SER SEQRES 6 C 209 PHE LYS THR LEU GLU LEU THR ASN PHE LYS PHE LEU LYS SEQRES 7 C 209 VAL GLY GLU GLU VAL ASN LEU GLU ARG SER ALA LEU PRO SEQRES 8 C 209 THR THR ARG LEU GLY GLY HIS LEU VAL SER GLY HIS VAL SEQRES 9 C 209 ASP GLY THR GLY LYS ILE LEU SER LYS GLU GLU ARG GLU SEQRES 10 C 209 GLY GLY ALA VAL ILE CYS TYR THR VAL GLN ASN ASP PRO SEQRES 11 C 209 SER LEU SER ARG TYR ILE ALA PRO ARG GLY SER ILE THR SEQRES 12 C 209 VAL ASP GLY ILE SER LEU THR VAL VAL ASP SER ARG PRO SEQRES 13 C 209 LYS GLU PHE ASP LEU VAL LEU ILE PRO GLU THR LEU LYS SEQRES 14 C 209 LYS THR ASN ALA LYS SER TRP ASN SER ASP THR ILE LEU SEQRES 15 C 209 ASN LEU GLU ILE ASP LEU VAL ALA ARG TYR LEU GLU GLN SEQRES 16 C 209 LEU LEU LYS SER LYS GLU LEU VAL PRO ARG GLY SER LEU SEQRES 17 C 209 GLU HET PEG B 301 7 HET PEG C 301 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 HOH *27(H2 O) HELIX 1 AA1 ASN A 55 GLY A 57 5 3 HELIX 2 AA2 SER A 65 THR A 72 1 8 HELIX 3 AA3 ASN A 73 LEU A 77 5 5 HELIX 4 AA4 GLU A 117 ALA A 120 5 4 HELIX 5 AA5 ASP A 129 ARG A 134 1 6 HELIX 6 AA6 ILE A 164 THR A 171 1 8 HELIX 7 AA7 ASN A 172 TRP A 176 5 5 HELIX 8 AA8 ASP A 187 LYS A 200 1 14 HELIX 9 AA9 ASN B 55 GLY B 57 5 3 HELIX 10 AB1 PHE B 66 THR B 72 1 7 HELIX 11 AB2 ASN B 73 LEU B 77 5 5 HELIX 12 AB3 GLU B 117 ALA B 120 5 4 HELIX 13 AB4 ASP B 129 ARG B 134 1 6 HELIX 14 AB5 ILE B 164 THR B 171 1 8 HELIX 15 AB6 ASN B 172 TRP B 176 5 5 HELIX 16 AB7 ASP B 187 SER B 199 1 13 HELIX 17 AB8 PHE C 66 THR C 72 1 7 HELIX 18 AB9 ASN C 73 LEU C 77 5 5 HELIX 19 AC1 LEU C 132 ILE C 136 5 5 HELIX 20 AC2 ILE C 164 LYS C 169 1 6 HELIX 21 AC3 THR C 171 TRP C 176 5 6 HELIX 22 AC4 ASP C 187 SER C 199 1 13 SHEET 1 AA1 6 SER A 40 VAL A 43 0 SHEET 2 AA1 6 CYS A 46 THR A 54 -1 O CYS A 46 N VAL A 43 SHEET 3 AA1 6 ARG A 59 ALA A 64 -1 O ARG A 59 N THR A 54 SHEET 4 AA1 6 GLY A 21 GLU A 27 -1 N VAL A 26 O PHE A 60 SHEET 5 AA1 6 THR A 8 THR A 18 -1 N LEU A 13 O LEU A 25 SHEET 6 AA1 6 GLU A 82 LEU A 85 -1 O VAL A 83 N GLY A 10 SHEET 1 AA2 6 GLU A 115 ARG A 116 0 SHEET 2 AA2 6 VAL A 121 GLN A 127 -1 N VAL A 121 O ARG A 116 SHEET 3 AA2 6 GLY A 106 SER A 112 -1 N LEU A 111 O THR A 125 SHEET 4 AA2 6 ILE A 181 ILE A 186 -1 O LEU A 182 N GLY A 108 SHEET 5 AA2 6 SER A 141 VAL A 144 -1 N THR A 143 O GLU A 185 SHEET 6 AA2 6 ILE A 147 THR A 150 -1 O LEU A 149 N ILE A 142 SHEET 1 AA3 4 GLU A 115 ARG A 116 0 SHEET 2 AA3 4 VAL A 121 GLN A 127 -1 N VAL A 121 O ARG A 116 SHEET 3 AA3 4 GLU A 158 LEU A 163 -1 O LEU A 161 N TYR A 124 SHEET 4 AA3 4 ASP A 153 ARG A 155 -1 N ASP A 153 O ASP A 160 SHEET 1 AA4 6 SER B 40 VAL B 43 0 SHEET 2 AA4 6 CYS B 46 THR B 54 -1 O CYS B 46 N VAL B 43 SHEET 3 AA4 6 ARG B 59 SER B 65 -1 O ARG B 59 N THR B 54 SHEET 4 AA4 6 GLY B 21 GLU B 27 -1 N VAL B 26 O PHE B 60 SHEET 5 AA4 6 THR B 8 GLU B 17 -1 N LEU B 13 O LEU B 25 SHEET 6 AA4 6 GLU B 82 LEU B 85 -1 O LEU B 85 N THR B 8 SHEET 1 AA5 6 GLU B 115 ARG B 116 0 SHEET 2 AA5 6 VAL B 121 GLN B 127 -1 O VAL B 121 N ARG B 116 SHEET 3 AA5 6 GLY B 106 SER B 112 -1 N LEU B 111 O THR B 125 SHEET 4 AA5 6 ILE B 181 ILE B 186 -1 O LEU B 182 N GLY B 108 SHEET 5 AA5 6 SER B 141 VAL B 144 -1 N THR B 143 O GLU B 185 SHEET 6 AA5 6 ILE B 147 THR B 150 -1 O ILE B 147 N VAL B 144 SHEET 1 AA6 4 GLU B 115 ARG B 116 0 SHEET 2 AA6 4 VAL B 121 GLN B 127 -1 O VAL B 121 N ARG B 116 SHEET 3 AA6 4 GLU B 158 LEU B 163 -1 O LEU B 161 N TYR B 124 SHEET 4 AA6 4 ASP B 153 SER B 154 -1 N ASP B 153 O ASP B 160 SHEET 1 AA7 7 THR C 8 THR C 18 0 SHEET 2 AA7 7 GLY C 21 GLU C 27 -1 O LEU C 25 N LEU C 13 SHEET 3 AA7 7 ARG C 59 SER C 65 -1 O PHE C 60 N VAL C 26 SHEET 4 AA7 7 CYS C 46 PHE C 53 -1 N GLU C 52 O ARG C 61 SHEET 5 AA7 7 SER C 40 VAL C 43 -1 N VAL C 43 O CYS C 46 SHEET 6 AA7 7 GLU C 82 ARG C 87 -1 O GLU C 86 N SER C 42 SHEET 7 AA7 7 THR C 8 THR C 18 -1 N THR C 8 O LEU C 85 SHEET 1 AA8 4 THR C 107 GLY C 108 0 SHEET 2 AA8 4 LEU C 182 ILE C 186 -1 O LEU C 182 N GLY C 108 SHEET 3 AA8 4 SER C 141 VAL C 144 -1 N THR C 143 O GLU C 185 SHEET 4 AA8 4 ILE C 147 THR C 150 -1 O ILE C 147 N VAL C 144 SHEET 1 AA9 3 ILE C 110 SER C 112 0 SHEET 2 AA9 3 VAL C 121 VAL C 126 -1 O THR C 125 N LEU C 111 SHEET 3 AA9 3 GLU C 115 ARG C 116 -1 N ARG C 116 O VAL C 121 SHEET 1 AB1 4 ILE C 110 SER C 112 0 SHEET 2 AB1 4 VAL C 121 VAL C 126 -1 O THR C 125 N LEU C 111 SHEET 3 AB1 4 GLU C 158 LEU C 163 -1 O LEU C 161 N TYR C 124 SHEET 4 AB1 4 ASP C 153 ARG C 155 -1 N ASP C 153 O ASP C 160 SITE 1 AC1 3 PHE B 76 ASP B 179 ILE B 181 SITE 1 AC2 4 PRO A 91 MET B 1 THR C 92 THR C 93 CRYST1 59.559 130.632 202.500 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004938 0.00000