HEADER PROTEIN BINDING 14-FEB-22 7WWP TITLE CRYSTAL STRUCTURE OF HUMAN NPL4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PROTEIN LOCALIZATION PROTEIN 4 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN NPL4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NPLOC4, NPL4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P97, UFD1, NPL4, EDOPLASMID RETICULUM-ASSOCIATED DEGRADATION, KEYWDS 2 UBIQUITIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.Q.NGUYEN,L.T.M.LE,D.H.KIM,K.S.KO,H.T.LEE,Y.T.K.NGUYEN,H.S.KIM, AUTHOR 2 B.W.HAN,W.KANG,J.K.YANG REVDAT 4 29-NOV-23 7WWP 1 REMARK REVDAT 3 16-NOV-22 7WWP 1 JRNL REVDAT 2 28-SEP-22 7WWP 1 JRNL REVDAT 1 21-SEP-22 7WWP 0 JRNL AUTH T.Q.NGUYEN,L.T.MY LE,D.H.KIM,K.S.KO,H.T.LEE,Y.T.KIM NGUYEN, JRNL AUTH 2 H.S.KIM,B.W.HAN,W.KANG,J.K.YANG JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION BETWEEN HUMAN NPL4 AND JRNL TITL 2 NPL4-BINDING MOTIF OF HUMAN UFD1. JRNL REF STRUCTURE V. 30 1530 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 36087575 JRNL DOI 10.1016/J.STR.2022.08.005 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4400 - 5.1200 0.99 2904 147 0.2341 0.2985 REMARK 3 2 5.1200 - 4.0600 0.99 2720 148 0.2048 0.2312 REMARK 3 3 4.0600 - 3.5500 1.00 2728 156 0.2265 0.3228 REMARK 3 4 3.5500 - 3.2300 1.00 2689 149 0.2357 0.3188 REMARK 3 5 3.2300 - 2.9900 0.99 2675 136 0.3004 0.3311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.401 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3439 REMARK 3 ANGLE : 1.058 4672 REMARK 3 CHIRALITY : 0.056 513 REMARK 3 PLANARITY : 0.009 612 REMARK 3 DIHEDRAL : 6.984 455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3080 33.1393 3.5605 REMARK 3 T TENSOR REMARK 3 T11: 0.5512 T22: 0.4686 REMARK 3 T33: 0.4176 T12: 0.1036 REMARK 3 T13: 0.0049 T23: 0.0991 REMARK 3 L TENSOR REMARK 3 L11: 1.7471 L22: 1.7539 REMARK 3 L33: 2.4106 L12: 0.4427 REMARK 3 L13: -0.4068 L23: -0.1704 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.6164 S13: -0.2348 REMARK 3 S21: 0.5712 S22: 0.0290 S23: -0.0129 REMARK 3 S31: 0.2743 S32: 0.1098 S33: -0.0690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9314 35.4739 -11.9141 REMARK 3 T TENSOR REMARK 3 T11: 0.3882 T22: 0.3327 REMARK 3 T33: 0.4016 T12: 0.0551 REMARK 3 T13: 0.0042 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.0239 L22: 2.1785 REMARK 3 L33: 1.6628 L12: 1.9005 REMARK 3 L13: -0.7179 L23: -1.4356 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: 0.1519 S13: -0.2190 REMARK 3 S21: -0.0384 S22: 0.0293 S23: 0.0602 REMARK 3 S31: 0.2496 S32: -0.2858 S33: 0.0639 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 428 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0302 43.6259 -19.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.4378 T22: 0.2796 REMARK 3 T33: 0.4288 T12: 0.1506 REMARK 3 T13: 0.0216 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.2709 L22: 1.8122 REMARK 3 L33: 1.6129 L12: 1.0201 REMARK 3 L13: -0.6344 L23: -0.8584 REMARK 3 S TENSOR REMARK 3 S11: 0.1677 S12: 0.0619 S13: 0.1820 REMARK 3 S21: -0.1638 S22: -0.2141 S23: -0.2280 REMARK 3 S31: -0.0196 S32: 0.2557 S33: 0.0653 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 27.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.12400 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7WWQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH6.5), 16 % (W/V) PEG REMARK 280 3350, AND 5 % (V/V) MPD, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.29167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.58333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.29167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.58333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.29167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 84.58333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.29167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 84.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 91 REMARK 465 SER A 92 REMARK 465 VAL A 93 REMARK 465 PRO A 94 REMARK 465 PRO A 95 REMARK 465 GLY A 96 REMARK 465 PHE A 97 REMARK 465 LYS A 98 REMARK 465 VAL A 99 REMARK 465 PHE A 100 REMARK 465 GLY A 101 REMARK 465 ALA A 102 REMARK 465 PRO A 103 REMARK 465 ASN A 104 REMARK 465 GLY A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 LYS A 177 REMARK 465 GLY A 178 REMARK 465 LYS A 179 REMARK 465 PHE A 180 REMARK 465 VAL A 181 REMARK 465 ALA A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 ILE A 186 REMARK 465 SER A 187 REMARK 465 CYS A 188 REMARK 465 LYS A 189 REMARK 465 ILE A 190 REMARK 465 LYS A 191 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 CYS A 194 REMARK 465 GLU A 195 REMARK 465 GLY A 196 REMARK 465 HIS A 197 REMARK 465 LEU A 198 REMARK 465 PRO A 199 REMARK 465 TRP A 200 REMARK 465 PRO A 201 REMARK 465 ASN A 202 REMARK 465 GLY A 203 REMARK 465 ILE A 204 REMARK 465 CYS A 205 REMARK 465 THR A 206 REMARK 465 LYS A 207 REMARK 465 CYS A 208 REMARK 465 GLN A 209 REMARK 465 SER A 416 REMARK 465 SER A 417 REMARK 465 GLU A 418 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 LEU A 129 CG CD1 CD2 REMARK 470 LEU A 135 CG CD1 CD2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 VAL A 429 CG1 CG2 REMARK 470 ASP A 430 CG OD1 OD2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 141 -30.32 -131.13 REMARK 500 VAL A 142 138.66 -38.79 REMARK 500 PRO A 146 2.30 -67.41 REMARK 500 LEU A 171 76.23 -66.31 REMARK 500 THR A 172 51.50 31.15 REMARK 500 HIS A 259 79.54 -114.78 REMARK 500 SER A 284 146.46 -178.54 REMARK 500 GLU A 318 -69.30 -93.67 REMARK 500 TYR A 327 78.43 -105.22 REMARK 500 THR A 333 -93.71 -117.21 REMARK 500 GLU A 339 -70.49 -33.36 REMARK 500 GLU A 414 -68.13 -94.47 REMARK 500 ASP A 430 -146.96 -91.50 REMARK 500 GLU A 435 80.32 -60.35 REMARK 500 ALA A 440 41.53 -75.13 REMARK 500 GLU A 481 86.54 -162.42 REMARK 500 LEU A 521 38.68 -79.55 REMARK 500 GLU A 562 71.39 -107.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 HIS A 132 NE2 113.9 REMARK 620 3 CYS A 138 SG 107.5 95.7 REMARK 620 4 CYS A 141 SG 117.2 106.8 113.8 REMARK 620 N 1 2 3 DBREF 7WWP A 91 560 UNP Q8TAT6 NPL4_HUMAN 91 560 SEQADV 7WWP LEU A 561 UNP Q8TAT6 EXPRESSION TAG SEQADV 7WWP GLU A 562 UNP Q8TAT6 EXPRESSION TAG SEQADV 7WWP ALA A 563 UNP Q8TAT6 EXPRESSION TAG SEQRES 1 A 473 THR SER VAL PRO PRO GLY PHE LYS VAL PHE GLY ALA PRO SEQRES 2 A 473 ASN VAL VAL GLU ASP GLU ILE ASP GLN TYR LEU SER LYS SEQRES 3 A 473 GLN ASP GLY LYS ILE TYR ARG SER ARG ASP PRO GLN LEU SEQRES 4 A 473 CYS ARG HIS GLY PRO LEU GLY LYS CYS VAL HIS CYS VAL SEQRES 5 A 473 PRO LEU GLU PRO PHE ASP GLU ASP TYR LEU ASN HIS LEU SEQRES 6 A 473 GLU PRO PRO VAL LYS HIS MET SER PHE HIS ALA TYR ILE SEQRES 7 A 473 ARG LYS LEU THR GLY GLY ALA ASP LYS GLY LYS PHE VAL SEQRES 8 A 473 ALA LEU GLU ASN ILE SER CYS LYS ILE LYS SER GLY CYS SEQRES 9 A 473 GLU GLY HIS LEU PRO TRP PRO ASN GLY ILE CYS THR LYS SEQRES 10 A 473 CYS GLN PRO SER ALA ILE THR LEU ASN ARG GLN LYS TYR SEQRES 11 A 473 ARG HIS VAL ASP ASN ILE MET PHE GLU ASN HIS THR VAL SEQRES 12 A 473 ALA ASP ARG PHE LEU ASP PHE TRP ARG LYS THR GLY ASN SEQRES 13 A 473 GLN HIS PHE GLY TYR LEU TYR GLY ARG TYR THR GLU HIS SEQRES 14 A 473 LYS ASP ILE PRO LEU GLY ILE ARG ALA GLU VAL ALA ALA SEQRES 15 A 473 ILE TYR GLU PRO PRO GLN ILE GLY THR GLN ASN SER LEU SEQRES 16 A 473 GLU LEU LEU GLU ASP PRO LYS ALA GLU VAL VAL ASP GLU SEQRES 17 A 473 ILE ALA ALA LYS LEU GLY LEU ARG LYS VAL GLY TRP ILE SEQRES 18 A 473 PHE THR ASP LEU VAL SER GLU ASP THR ARG LYS GLY THR SEQRES 19 A 473 VAL ARG TYR SER ARG ASN LYS ASP THR TYR PHE LEU SER SEQRES 20 A 473 SER GLU GLU CYS ILE THR ALA GLY ASP PHE GLN ASN LYS SEQRES 21 A 473 HIS PRO ASN MET CYS ARG LEU SER PRO ASP GLY HIS PHE SEQRES 22 A 473 GLY SER LYS PHE VAL THR ALA VAL ALA THR GLY GLY PRO SEQRES 23 A 473 ASP ASN GLN VAL HIS PHE GLU GLY TYR GLN VAL SER ASN SEQRES 24 A 473 GLN CYS MET ALA LEU VAL ARG ASP GLU CYS LEU LEU PRO SEQRES 25 A 473 CYS LYS ASP ALA PRO GLU LEU GLY TYR ALA LYS GLU SER SEQRES 26 A 473 SER SER GLU GLN TYR VAL PRO ASP VAL PHE TYR LYS ASP SEQRES 27 A 473 VAL ASP LYS PHE GLY ASN GLU ILE THR GLN LEU ALA ARG SEQRES 28 A 473 PRO LEU PRO VAL GLU TYR LEU ILE ILE ASP ILE THR THR SEQRES 29 A 473 THR PHE PRO LYS ASP PRO VAL TYR THR PHE SER ILE SER SEQRES 30 A 473 GLN ASN PRO PHE PRO ILE GLU ASN ARG ASP VAL LEU GLY SEQRES 31 A 473 GLU THR GLN ASP PHE HIS SER LEU ALA THR TYR LEU SER SEQRES 32 A 473 GLN ASN THR SER SER VAL PHE LEU ASP THR ILE SER ASP SEQRES 33 A 473 PHE HIS LEU LEU LEU PHE LEU VAL THR ASN GLU VAL MET SEQRES 34 A 473 PRO LEU GLN ASP SER ILE SER LEU LEU LEU GLU ALA VAL SEQRES 35 A 473 ARG THR ARG ASN GLU GLU LEU ALA GLN THR TRP LYS ARG SEQRES 36 A 473 SER GLU GLN TRP ALA THR ILE GLU GLN LEU CYS SER THR SEQRES 37 A 473 VAL GLY LEU GLU ALA HET ZN A 901 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 AA1 ASP A 108 LYS A 116 1 9 HELIX 2 AA2 ASP A 148 HIS A 154 1 7 HELIX 3 AA3 PHE A 164 LEU A 171 1 8 HELIX 4 AA4 ASN A 230 GLY A 245 1 16 HELIX 5 AA5 LYS A 292 LYS A 302 1 11 HELIX 6 AA6 SER A 337 HIS A 351 1 15 HELIX 7 AA7 SER A 388 ASP A 397 1 10 HELIX 8 AA8 ARG A 476 GLY A 480 5 5 HELIX 9 AA9 ASP A 484 ASN A 495 1 12 HELIX 10 AB1 VAL A 499 SER A 505 1 7 HELIX 11 AB2 ASP A 506 ASN A 516 1 11 HELIX 12 AB3 ILE A 525 ARG A 535 1 11 HELIX 13 AB4 ASN A 536 ARG A 545 1 10 HELIX 14 AB5 SER A 546 GLU A 562 1 17 SHEET 1 AA1 2 MET A 162 SER A 163 0 SHEET 2 AA1 2 TYR A 220 ARG A 221 1 O ARG A 221 N MET A 162 SHEET 1 AA2 3 ILE A 213 LEU A 215 0 SHEET 2 AA2 3 VAL A 424 LYS A 427 1 O PHE A 425 N ILE A 213 SHEET 3 AA2 3 THR A 437 LEU A 439 -1 O GLN A 438 N TYR A 426 SHEET 1 AA3 8 ASN A 225 PHE A 228 0 SHEET 2 AA3 8 ILE A 266 TYR A 274 1 O ALA A 268 N ASN A 225 SHEET 3 AA3 8 PHE A 249 GLU A 258 -1 N ARG A 255 O GLU A 269 SHEET 4 AA3 8 ARG A 306 THR A 313 -1 O VAL A 308 N LEU A 252 SHEET 5 AA3 8 VAL A 368 GLY A 374 1 O ALA A 370 N TRP A 310 SHEET 6 AA3 8 VAL A 380 VAL A 387 -1 O TYR A 385 N THR A 369 SHEET 7 AA3 8 ILE A 449 THR A 455 -1 O ILE A 450 N GLN A 386 SHEET 8 AA3 8 ASN A 225 PHE A 228 1 N ILE A 226 O THR A 455 SHEET 1 AA4 2 GLN A 278 THR A 281 0 SHEET 2 AA4 2 SER A 284 LEU A 287 -1 O GLU A 286 N ILE A 279 SHEET 1 AA5 2 PRO A 352 MET A 354 0 SHEET 2 AA5 2 HIS A 362 SER A 365 -1 O GLY A 364 N ASN A 353 SHEET 1 AA6 3 LEU A 400 CYS A 403 0 SHEET 2 AA6 3 ALA A 406 ALA A 412 -1 O TYR A 411 N LEU A 401 SHEET 3 AA6 3 LEU A 443 PRO A 444 -1 O LEU A 443 N GLY A 410 LINK SG CYS A 130 ZN ZN A 901 1555 1555 2.34 LINK NE2 HIS A 132 ZN ZN A 901 1555 1555 2.11 LINK SG CYS A 138 ZN ZN A 901 1555 1555 2.32 LINK SG CYS A 141 ZN ZN A 901 1555 1555 2.33 CISPEP 1 GLU A 156 PRO A 157 0 4.75 CISPEP 2 ARG A 441 PRO A 442 0 3.88 CRYST1 136.325 136.325 126.875 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007335 0.004235 0.000000 0.00000 SCALE2 0.000000 0.008470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007882 0.00000