HEADER OXIDOREDUCTASE 14-FEB-22 7WWX TITLE CRYSTAL STRUCTURE OF HERBASPIRILLUM HUTTIENSE L-ARABINOSE 1- TITLE 2 DEHYDROGENASE (NAD BOUND FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)-DEPENDENT DEHYDROGENASE (SHORT-SUBUNIT ALCOHOL COMPND 3 DEHYDROGENASE FAMILY); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBASPIRILLUM HUTTIENSE SUBSP. PUTEI IAM SOURCE 3 15032; SOURCE 4 ORGANISM_TAXID: 1235558; SOURCE 5 GENE: DFS02_4196; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS L-ARABINOSE METABOLISM, NAD-DEPENDENT DEHYDROGENASE, SDR PROTEIN KEYWDS 2 FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MATSUBARA,K.YOSHIWARA,Y.WATANABE,S.WATANABE REVDAT 2 29-NOV-23 7WWX 1 REMARK REVDAT 1 30-MAR-22 7WWX 0 JRNL AUTH S.WATANABE,K.YOSHIWARA,R.MATSUBARA,Y.WATANABE JRNL TITL CRYSTAL STRUCTURE OF L-ARABINOSE 1-DEHYDROGENASE AS A JRNL TITL 2 SHORT-CHAIN REDUCTASE/DEHYDROGENASE PROTEIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 604 14 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 35279441 JRNL DOI 10.1016/J.BBRC.2022.03.028 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 108813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 459 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4052 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3690 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5516 ; 1.807 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8511 ; 1.608 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;36.850 ;21.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 618 ;13.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;11.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4624 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 886 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7WWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 42.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.23600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 2.03200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3NUG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.25450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.78100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.25450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.78100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 ASN B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 401 O HOH B 413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 602 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 118 CD GLU A 118 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -151.11 -100.31 REMARK 500 PHE A 165 65.06 -167.82 REMARK 500 ALA A 251 -3.92 78.36 REMARK 500 GLN B 128 -50.90 -123.82 REMARK 500 SER B 154 -149.53 -99.45 REMARK 500 PHE B 165 62.76 -164.46 REMARK 500 ALA B 251 -6.50 81.38 REMARK 500 ASP B 257 10.60 -143.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 668 DISTANCE = 6.09 ANGSTROMS DBREF1 7WWX A 2 261 UNP A0A4R8JL46_9BURK DBREF2 7WWX A A0A4R8JL46 2 261 DBREF1 7WWX B 2 261 UNP A0A4R8JL46_9BURK DBREF2 7WWX B A0A4R8JL46 2 261 SEQADV 7WWX MET A -10 UNP A0A4R8JL4 INITIATING METHIONINE SEQADV 7WWX ARG A -9 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX GLY A -8 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX SER A -7 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -6 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -5 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -4 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -3 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -2 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS A -1 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX GLY A 0 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX SER A 1 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX MET B -10 UNP A0A4R8JL4 INITIATING METHIONINE SEQADV 7WWX ARG B -9 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX GLY B -8 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX SER B -7 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -6 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -5 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -4 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -3 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -2 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX HIS B -1 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX GLY B 0 UNP A0A4R8JL4 EXPRESSION TAG SEQADV 7WWX SER B 1 UNP A0A4R8JL4 EXPRESSION TAG SEQRES 1 A 272 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 272 ASN THR PRO GLN ASN VAL GLN LEU ALA ASN PHE PRO SER SEQRES 3 A 272 LEU LYS GLY LYS ARG VAL PHE ILE THR GLY GLY GLY THR SEQRES 4 A 272 GLY ILE GLY ALA ALA ILE VAL GLU ALA PHE ALA GLN GLN SEQRES 5 A 272 GLY ALA HIS VAL ALA PHE VAL ASP ILE ALA THR GLU ALA SEQRES 6 A 272 SER GLU ALA LEU CYS ASN ASP ILE ALA ALA ALA GLY HIS SEQRES 7 A 272 PRO LYS PRO LEU PHE ARG HIS CYS ASP LEU ARG ASP ILE SEQRES 8 A 272 PRO ALA PHE GLN ALA THR ILE ALA GLU LEU GLN GLY GLN SEQRES 9 A 272 LEU GLY ASP PHE ASP VAL LEU VAL ASN ASN ALA ALA ASN SEQRES 10 A 272 ASP GLN ARG HIS LYS LEU GLU GLU VAL THR LEU GLU TYR SEQRES 11 A 272 TRP ASN ASP ARG ILE ALA ILE ASN GLN ARG PRO SER PHE SEQRES 12 A 272 PHE ALA VAL GLN SER VAL VAL GLU GLY MET LYS ARG ARG SEQRES 13 A 272 GLY GLY GLY SER ILE ILE ASN PHE SER SER ILE SER TRP SEQRES 14 A 272 HIS GLN SER GLY GLY GLY PHE PRO VAL TYR THR THR ALA SEQRES 15 A 272 LYS ALA SER THR LEU GLY LEU THR ARG GLY LEU ALA ARG SEQRES 16 A 272 ASP LEU GLY PRO HIS LYS ILE ARG VAL ASN THR VAL THR SEQRES 17 A 272 PRO GLY TRP VAL MET THR GLU ARG GLN ILE LYS LEU TRP SEQRES 18 A 272 LEU ASP GLU GLU GLY LYS LYS ALA ILE ALA ARG ASN GLN SEQRES 19 A 272 CYS LEU GLN GLY ASP LEU LEU PRO TRP HIS LEU ALA ARG SEQRES 20 A 272 MET VAL LEU PHE LEU ALA ALA ASP ASP SER ALA MET CYS SEQRES 21 A 272 THR ALA GLN GLU PHE ILE VAL ASP ALA GLY TRP VAL SEQRES 1 B 272 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 272 ASN THR PRO GLN ASN VAL GLN LEU ALA ASN PHE PRO SER SEQRES 3 B 272 LEU LYS GLY LYS ARG VAL PHE ILE THR GLY GLY GLY THR SEQRES 4 B 272 GLY ILE GLY ALA ALA ILE VAL GLU ALA PHE ALA GLN GLN SEQRES 5 B 272 GLY ALA HIS VAL ALA PHE VAL ASP ILE ALA THR GLU ALA SEQRES 6 B 272 SER GLU ALA LEU CYS ASN ASP ILE ALA ALA ALA GLY HIS SEQRES 7 B 272 PRO LYS PRO LEU PHE ARG HIS CYS ASP LEU ARG ASP ILE SEQRES 8 B 272 PRO ALA PHE GLN ALA THR ILE ALA GLU LEU GLN GLY GLN SEQRES 9 B 272 LEU GLY ASP PHE ASP VAL LEU VAL ASN ASN ALA ALA ASN SEQRES 10 B 272 ASP GLN ARG HIS LYS LEU GLU GLU VAL THR LEU GLU TYR SEQRES 11 B 272 TRP ASN ASP ARG ILE ALA ILE ASN GLN ARG PRO SER PHE SEQRES 12 B 272 PHE ALA VAL GLN SER VAL VAL GLU GLY MET LYS ARG ARG SEQRES 13 B 272 GLY GLY GLY SER ILE ILE ASN PHE SER SER ILE SER TRP SEQRES 14 B 272 HIS GLN SER GLY GLY GLY PHE PRO VAL TYR THR THR ALA SEQRES 15 B 272 LYS ALA SER THR LEU GLY LEU THR ARG GLY LEU ALA ARG SEQRES 16 B 272 ASP LEU GLY PRO HIS LYS ILE ARG VAL ASN THR VAL THR SEQRES 17 B 272 PRO GLY TRP VAL MET THR GLU ARG GLN ILE LYS LEU TRP SEQRES 18 B 272 LEU ASP GLU GLU GLY LYS LYS ALA ILE ALA ARG ASN GLN SEQRES 19 B 272 CYS LEU GLN GLY ASP LEU LEU PRO TRP HIS LEU ALA ARG SEQRES 20 B 272 MET VAL LEU PHE LEU ALA ALA ASP ASP SER ALA MET CYS SEQRES 21 B 272 THR ALA GLN GLU PHE ILE VAL ASP ALA GLY TRP VAL HET NAD A 301 44 HET PEG A 302 7 HET NAD B 301 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 PEG C4 H10 O3 FORMUL 6 HOH *550(H2 O) HELIX 1 AA1 PHE A 13 LYS A 17 5 5 HELIX 2 AA2 THR A 28 GLN A 41 1 14 HELIX 3 AA3 ALA A 51 ALA A 65 1 15 HELIX 4 AA4 ASP A 79 GLY A 95 1 17 HELIX 5 AA5 LYS A 111 VAL A 115 5 5 HELIX 6 AA6 THR A 116 GLN A 128 1 13 HELIX 7 AA7 GLN A 128 GLY A 146 1 19 HELIX 8 AA8 SER A 155 GLN A 160 1 6 HELIX 9 AA9 PHE A 165 GLY A 187 1 23 HELIX 10 AB1 THR A 203 TRP A 210 1 8 HELIX 11 AB2 ASP A 212 GLN A 223 1 12 HELIX 12 AB3 LEU A 230 ALA A 243 1 14 HELIX 13 AB4 ASP A 244 ALA A 247 5 4 HELIX 14 AB5 PHE B 13 LYS B 17 5 5 HELIX 15 AB6 THR B 28 GLN B 41 1 14 HELIX 16 AB7 ALA B 51 ALA B 65 1 15 HELIX 17 AB8 ASP B 79 GLY B 95 1 17 HELIX 18 AB9 LYS B 111 VAL B 115 5 5 HELIX 19 AC1 THR B 116 GLN B 128 1 13 HELIX 20 AC2 GLN B 128 GLY B 146 1 19 HELIX 21 AC3 SER B 155 GLN B 160 1 6 HELIX 22 AC4 PHE B 165 GLY B 187 1 23 HELIX 23 AC5 THR B 203 LEU B 211 1 9 HELIX 24 AC6 ASP B 212 GLN B 223 1 12 HELIX 25 AC7 LEU B 230 ALA B 243 1 14 HELIX 26 AC8 ASP B 244 ALA B 247 5 4 SHEET 1 AA1 7 LEU A 71 HIS A 74 0 SHEET 2 AA1 7 HIS A 44 ASP A 49 1 N PHE A 47 O LEU A 71 SHEET 3 AA1 7 ARG A 20 THR A 24 1 N VAL A 21 O ALA A 46 SHEET 4 AA1 7 VAL A 99 ASN A 102 1 O VAL A 101 N PHE A 22 SHEET 5 AA1 7 GLY A 148 PHE A 153 1 O ILE A 151 N ASN A 102 SHEET 6 AA1 7 ILE A 191 PRO A 198 1 O ASN A 194 N ASN A 152 SHEET 7 AA1 7 GLU A 253 VAL A 256 1 O PHE A 254 N THR A 195 SHEET 1 AA2 7 LEU B 71 HIS B 74 0 SHEET 2 AA2 7 HIS B 44 ASP B 49 1 N PHE B 47 O LEU B 71 SHEET 3 AA2 7 ARG B 20 THR B 24 1 N VAL B 21 O ALA B 46 SHEET 4 AA2 7 VAL B 99 ASN B 102 1 O VAL B 101 N PHE B 22 SHEET 5 AA2 7 GLY B 148 PHE B 153 1 O ILE B 151 N ASN B 102 SHEET 6 AA2 7 ILE B 191 PRO B 198 1 O ASN B 194 N ASN B 152 SHEET 7 AA2 7 GLU B 253 VAL B 256 1 O PHE B 254 N THR B 195 CRYST1 86.509 83.562 81.927 90.00 113.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011559 0.000000 0.004915 0.00000 SCALE2 0.000000 0.011967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013264 0.00000