HEADER VIRAL PROTEIN 16-FEB-22 7WYR TITLE CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA MUTANT FUSED WITH CLN025 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN FUSED WITH CLN025; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-71, UNP RESIDUES 77-248; COMPND 5 SYNONYM: C-POLYHEDRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYPOVIRUS 1, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 110829, 32630; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KOJIMA,S.ABE,K.HIRATA,K.YAMASHITA,T.UENO REVDAT 2 29-NOV-23 7WYR 1 REMARK REVDAT 1 22-FEB-23 7WYR 0 JRNL AUTH M.KOJIMA,S.ABE,T.FURUTA,D.P.TRAN,K.HIRATA,K.YAMASHITA, JRNL AUTH 2 Y.HISHIKAWA,A.KITAO,T.UENO JRNL TITL ENGINEERING OF AN IN-CELL PROTEIN CRYSTAL FOR FASTENING A JRNL TITL 2 METASTABLE CONFORMATION OF A TARGET MINIPROTEIN. JRNL REF BIOMATER SCI V. 11 1350 2023 JRNL REFN ISSN 2047-4849 JRNL PMID 36594419 JRNL DOI 10.1039/D2BM01759H REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.948 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4480 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2111 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1802 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2864 ; 1.544 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4185 ; 1.372 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 7.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;34.174 ;22.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 325 ;11.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2430 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 481 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 315 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 136 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 995 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 0.773 ; 0.899 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1008 ; 0.771 ; 0.898 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1259 ; 1.269 ; 1.344 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1260 ; 1.269 ; 1.345 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1102 ; 1.137 ; 1.048 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1103 ; 1.137 ; 1.048 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1605 ; 1.797 ; 1.523 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1606 ; 1.796 ; 1.523 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7WYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 211.2 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN CELL CRYSTALLIZATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 52.26000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 52.26000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 52.26000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 52.26000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 52.26000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 52.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 80 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 80 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -51.77 75.21 REMARK 500 TYR A 71 -2.61 83.90 REMARK 500 SER A 136 41.04 71.60 REMARK 500 GLU A 140 -58.96 75.54 REMARK 500 ASN A 190 86.54 -152.85 REMARK 500 TYR A 229 -61.63 -121.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 7WYR A 2 71 UNP P11041 PYHD_CPVBM 2 71 DBREF 7WYR A 72 81 PDB 7WYR 7WYR 72 81 DBREF 7WYR A 82 253 UNP P11041 PYHD_CPVBM 77 248 SEQADV 7WYR ACE A 1 UNP P11041 ACETYLATION SEQRES 1 A 253 ACE ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 253 GLY ARG GLU GLN ARG LEU PHE ASN SER GLU GLN TYR ASN SEQRES 3 A 253 TYR ASN ASN SER LEU ASN GLY GLU VAL SER VAL TRP VAL SEQRES 4 A 253 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN SEQRES 5 A 253 LYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE SEQRES 6 A 253 LYS ALA LEU LYS GLU TYR TYR TYR ASP PRO GLU THR GLY SEQRES 7 A 253 THR TRP TYR ASN ASP SER TYR ASP GLU TYR GLU VAL ASN SEQRES 8 A 253 GLN SER ILE TYR TYR PRO ASN GLY GLY ASP ALA ARG LYS SEQRES 9 A 253 PHE HIS SER ASN ALA LYS PRO ARG ALA ILE GLN ILE ILE SEQRES 10 A 253 PHE SER PRO SER VAL ASN VAL ARG THR ILE LYS MET ALA SEQRES 11 A 253 LYS GLY ASN ALA VAL SER VAL PRO ASP GLU TYR LEU GLN SEQRES 12 A 253 ARG SER HIS PRO TRP GLU ALA THR GLY ILE LYS TYR ARG SEQRES 13 A 253 LYS ILE LYS ARG ASP GLY GLU ILE VAL GLY TYR SER HIS SEQRES 14 A 253 TYR PHE GLU LEU PRO HIS GLU TYR ASN SER ILE SER LEU SEQRES 15 A 253 ALA VAL SER GLY VAL HIS LYS ASN PRO SER SER TYR ASN SEQRES 16 A 253 VAL GLY SER ALA HIS ASN VAL MET ASP VAL PHE GLN SER SEQRES 17 A 253 CYS ASP LEU ALA LEU ARG PHE CYS ASN ARG TYR TRP ALA SEQRES 18 A 253 GLU LEU GLU LEU VAL ASN HIS TYR ILE SER PRO ASN ALA SEQRES 19 A 253 TYR PRO TYR LEU ASP ILE ASN ASN HIS SER TYR GLY VAL SEQRES 20 A 253 ALA LEU SER ASN ARG GLN HET ACE A 1 3 HET CL A 301 1 HET EDO A 302 4 HET EDO A 303 4 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ACE C2 H4 O FORMUL 2 CL CL 1- FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 ASP A 11 SER A 30 1 20 HELIX 2 AA2 PHE A 65 LYS A 69 5 5 HELIX 3 AA3 ASP A 74 GLY A 78 5 5 HELIX 4 AA4 ASP A 83 TYR A 96 1 14 HELIX 5 AA5 TYR A 141 SER A 145 5 5 HELIX 6 AA6 THR A 151 TYR A 155 5 5 HELIX 7 AA7 ASN A 201 ALA A 212 1 12 HELIX 8 AA8 ALA A 221 TYR A 229 1 9 SHEET 1 AA1 6 ARG A 156 ARG A 160 0 SHEET 2 AA1 6 GLU A 163 GLU A 172 -1 O VAL A 165 N ILE A 158 SHEET 3 AA1 6 ALA A 113 PHE A 118 -1 N ILE A 116 O HIS A 169 SHEET 4 AA1 6 GLU A 34 TYR A 42 -1 N TYR A 40 O GLN A 115 SHEET 5 AA1 6 VAL A 48 GLN A 56 -1 O ILE A 51 N VAL A 39 SHEET 6 AA1 6 LEU A 213 TYR A 219 -1 O PHE A 215 N ASN A 52 SHEET 1 AA2 3 LYS A 58 GLU A 63 0 SHEET 2 AA2 3 SER A 181 HIS A 188 -1 O LEU A 182 N GLU A 63 SHEET 3 AA2 3 VAL A 122 GLY A 132 -1 N ALA A 130 O ALA A 183 SHEET 1 AA3 2 TYR A 237 LEU A 238 0 SHEET 2 AA3 2 SER A 244 TYR A 245 -1 O TYR A 245 N TYR A 237 LINK C ACE A 1 N ALA A 2 1555 1555 1.33 CRYST1 104.520 104.520 104.520 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009568 0.00000 HETATM 1 C ACE A 1 16.835 -63.294 -42.801 1.00 13.08 C HETATM 2 O ACE A 1 16.238 -63.638 -43.780 1.00 14.57 O HETATM 3 CH3 ACE A 1 17.947 -64.157 -42.219 1.00 13.54 C