HEADER STRUCTURAL PROTEIN 22-FEB-22 7X0Z TITLE CRYO-EM STRUCTURE OF HUMAN ABCD1 E630Q IN THE PRESENCE OF ATP AND TITLE 2 MAGNESIUM IN OUTWARD-FACING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADRENOLEUKODYSTROPHY PROTEIN,ALDP; COMPND 5 EC: 3.1.2.-,7.6.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABCD1, ALD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX, MEMBRANE PROTEIN, LIGAND, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.CHAO,J.LI-NA,T.LIN REVDAT 1 22-MAR-23 7X0Z 0 JRNL AUTH C.XIONG,L.N.JIA,W.X.XIONG,X.T.WU,L.L.XIONG,T.H.WANG,D.ZHOU, JRNL AUTH 2 Z.HONG,Z.LIU,L.TANG JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION AND JRNL TITL 2 TRANSLOCATION OF HUMAN PEROXISOMAL ABC TRANSPORTER ALDP. JRNL REF SIGNAL TRANSDUCT TARGET THER V. 8 74 2023 JRNL REFN ESSN 2059-3635 JRNL PMID 36810450 JRNL DOI 10.1038/S41392-022-01280-9 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.960 REMARK 3 NUMBER OF PARTICLES : 636384 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7X0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027848. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 3D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF HUMAN REMARK 245 ABCD1 E630Q IN THE PRESENCE OF REMARK 245 ATP IN OUTWARD-FACING STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI EAGLE (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6650.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ASP A -16 REMARK 465 TYR A -15 REMARK 465 LYS A -14 REMARK 465 ASP A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 LYS A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 9 REMARK 465 TRP A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 ASN A 13 REMARK 465 THR A 14 REMARK 465 LEU A 15 REMARK 465 LYS A 16 REMARK 465 ARG A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 HIS A 30 REMARK 465 LYS A 31 REMARK 465 VAL A 32 REMARK 465 TYR A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 VAL A 36 REMARK 465 ARG A 37 REMARK 465 GLN A 38 REMARK 465 CYS A 39 REMARK 465 LEU A 40 REMARK 465 ALA A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 LEU A 46 REMARK 465 GLN A 47 REMARK 465 ALA A 48 REMARK 465 PRO A 49 REMARK 465 ALA A 50 REMARK 465 GLY A 51 REMARK 465 GLU A 52 REMARK 465 PRO A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 57 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 465 VAL A 60 REMARK 465 ALA A 61 REMARK 465 ALA A 62 REMARK 465 ALA A 63 REMARK 465 ILE A 352 REMARK 465 THR A 353 REMARK 465 ALA A 354 REMARK 465 THR A 355 REMARK 465 GLY A 356 REMARK 465 TYR A 357 REMARK 465 SER A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 465 ASP A 361 REMARK 465 ALA A 362 REMARK 465 GLU A 363 REMARK 465 ALA A 364 REMARK 465 VAL A 365 REMARK 465 LYS A 366 REMARK 465 LYS A 367 REMARK 465 ALA A 368 REMARK 465 ALA A 369 REMARK 465 LEU A 370 REMARK 465 GLU A 371 REMARK 465 LYS A 372 REMARK 465 LYS A 373 REMARK 465 GLU A 374 REMARK 465 GLU A 375 REMARK 465 GLU A 376 REMARK 465 LEU A 377 REMARK 465 VAL A 378 REMARK 465 ARG A 438 REMARK 465 GLU A 439 REMARK 465 LEU A 440 REMARK 465 GLU A 441 REMARK 465 ASP A 442 REMARK 465 ALA A 443 REMARK 465 GLN A 444 REMARK 465 ALA A 445 REMARK 465 GLY A 446 REMARK 465 SER A 447 REMARK 465 GLY A 448 REMARK 465 THR A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 ARG A 452 REMARK 465 SER A 453 REMARK 465 GLY A 454 REMARK 465 VAL A 455 REMARK 465 ARG A 456 REMARK 465 SER A 686 REMARK 465 ALA A 687 REMARK 465 ALA A 688 REMARK 465 ARG A 689 REMARK 465 LEU A 690 REMARK 465 SER A 691 REMARK 465 LEU A 692 REMARK 465 THR A 693 REMARK 465 GLU A 694 REMARK 465 GLU A 695 REMARK 465 LYS A 696 REMARK 465 GLN A 697 REMARK 465 ARG A 698 REMARK 465 LEU A 699 REMARK 465 GLU A 700 REMARK 465 GLN A 701 REMARK 465 GLN A 702 REMARK 465 LEU A 703 REMARK 465 ALA A 704 REMARK 465 GLY A 705 REMARK 465 ILE A 706 REMARK 465 PRO A 707 REMARK 465 LYS A 708 REMARK 465 MET A 709 REMARK 465 GLN A 710 REMARK 465 ARG A 711 REMARK 465 ARG A 712 REMARK 465 LEU A 713 REMARK 465 GLN A 714 REMARK 465 GLU A 715 REMARK 465 LEU A 716 REMARK 465 CYS A 717 REMARK 465 GLN A 718 REMARK 465 ILE A 719 REMARK 465 LEU A 720 REMARK 465 GLY A 721 REMARK 465 GLU A 722 REMARK 465 ALA A 723 REMARK 465 VAL A 724 REMARK 465 ALA A 725 REMARK 465 PRO A 726 REMARK 465 ALA A 727 REMARK 465 HIS A 728 REMARK 465 VAL A 729 REMARK 465 PRO A 730 REMARK 465 ALA A 731 REMARK 465 PRO A 732 REMARK 465 SER A 733 REMARK 465 PRO A 734 REMARK 465 GLN A 735 REMARK 465 GLY A 736 REMARK 465 PRO A 737 REMARK 465 GLY A 738 REMARK 465 GLY A 739 REMARK 465 LEU A 740 REMARK 465 GLN A 741 REMARK 465 GLY A 742 REMARK 465 ALA A 743 REMARK 465 SER A 744 REMARK 465 THR A 745 REMARK 465 MET B -17 REMARK 465 ASP B -16 REMARK 465 TYR B -15 REMARK 465 LYS B -14 REMARK 465 ASP B -13 REMARK 465 ASP B -12 REMARK 465 ASP B -11 REMARK 465 ASP B -10 REMARK 465 LYS B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 PRO B 9 REMARK 465 TRP B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 ASN B 13 REMARK 465 THR B 14 REMARK 465 LEU B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 THR B 18 REMARK 465 ALA B 19 REMARK 465 VAL B 20 REMARK 465 LEU B 21 REMARK 465 LEU B 22 REMARK 465 ALA B 23 REMARK 465 LEU B 24 REMARK 465 ALA B 25 REMARK 465 ALA B 26 REMARK 465 TYR B 27 REMARK 465 GLY B 28 REMARK 465 ALA B 29 REMARK 465 HIS B 30 REMARK 465 LYS B 31 REMARK 465 VAL B 32 REMARK 465 TYR B 33 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 VAL B 36 REMARK 465 ARG B 37 REMARK 465 GLN B 38 REMARK 465 CYS B 39 REMARK 465 LEU B 40 REMARK 465 ALA B 41 REMARK 465 PRO B 42 REMARK 465 ALA B 43 REMARK 465 ARG B 44 REMARK 465 GLY B 45 REMARK 465 LEU B 46 REMARK 465 GLN B 47 REMARK 465 ALA B 48 REMARK 465 PRO B 49 REMARK 465 ALA B 50 REMARK 465 GLY B 51 REMARK 465 GLU B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 GLU B 56 REMARK 465 ALA B 57 REMARK 465 SER B 58 REMARK 465 GLY B 59 REMARK 465 VAL B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 ALA B 63 REMARK 465 THR B 355 REMARK 465 GLY B 356 REMARK 465 TYR B 357 REMARK 465 SER B 358 REMARK 465 GLU B 359 REMARK 465 SER B 360 REMARK 465 ASP B 361 REMARK 465 ALA B 362 REMARK 465 GLU B 363 REMARK 465 ALA B 364 REMARK 465 VAL B 365 REMARK 465 LYS B 366 REMARK 465 LYS B 367 REMARK 465 ALA B 368 REMARK 465 ALA B 369 REMARK 465 LEU B 370 REMARK 465 GLU B 371 REMARK 465 LYS B 372 REMARK 465 LYS B 373 REMARK 465 GLU B 374 REMARK 465 GLU B 375 REMARK 465 GLU B 376 REMARK 465 LEU B 377 REMARK 465 ARG B 438 REMARK 465 GLU B 439 REMARK 465 LEU B 440 REMARK 465 GLU B 441 REMARK 465 ASP B 442 REMARK 465 ALA B 443 REMARK 465 GLN B 444 REMARK 465 ALA B 445 REMARK 465 GLY B 446 REMARK 465 SER B 447 REMARK 465 GLY B 448 REMARK 465 THR B 449 REMARK 465 ILE B 450 REMARK 465 GLY B 451 REMARK 465 ARG B 452 REMARK 465 SER B 453 REMARK 465 GLY B 454 REMARK 465 VAL B 455 REMARK 465 ARG B 456 REMARK 465 SER B 686 REMARK 465 ALA B 687 REMARK 465 ALA B 688 REMARK 465 ARG B 689 REMARK 465 LEU B 690 REMARK 465 SER B 691 REMARK 465 LEU B 692 REMARK 465 THR B 693 REMARK 465 GLU B 694 REMARK 465 GLU B 695 REMARK 465 LYS B 696 REMARK 465 GLN B 697 REMARK 465 ARG B 698 REMARK 465 LEU B 699 REMARK 465 GLU B 700 REMARK 465 GLN B 701 REMARK 465 GLN B 702 REMARK 465 LEU B 703 REMARK 465 ALA B 704 REMARK 465 GLY B 705 REMARK 465 ILE B 706 REMARK 465 PRO B 707 REMARK 465 LYS B 708 REMARK 465 MET B 709 REMARK 465 GLN B 710 REMARK 465 ARG B 711 REMARK 465 ARG B 712 REMARK 465 LEU B 713 REMARK 465 GLN B 714 REMARK 465 GLU B 715 REMARK 465 LEU B 716 REMARK 465 CYS B 717 REMARK 465 GLN B 718 REMARK 465 ILE B 719 REMARK 465 LEU B 720 REMARK 465 GLY B 721 REMARK 465 GLU B 722 REMARK 465 ALA B 723 REMARK 465 VAL B 724 REMARK 465 ALA B 725 REMARK 465 PRO B 726 REMARK 465 ALA B 727 REMARK 465 HIS B 728 REMARK 465 VAL B 729 REMARK 465 PRO B 730 REMARK 465 ALA B 731 REMARK 465 PRO B 732 REMARK 465 SER B 733 REMARK 465 PRO B 734 REMARK 465 GLN B 735 REMARK 465 GLY B 736 REMARK 465 PRO B 737 REMARK 465 GLY B 738 REMARK 465 GLY B 739 REMARK 465 LEU B 740 REMARK 465 GLN B 741 REMARK 465 GLY B 742 REMARK 465 ALA B 743 REMARK 465 SER B 744 REMARK 465 THR B 745 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 548 NH1 ARG B 285 2.18 REMARK 500 O THR B 632 NH1 ARG B 660 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 178 31.16 -146.76 REMARK 500 THR A 198 -61.00 -95.31 REMARK 500 ALA A 241 -5.32 67.90 REMARK 500 ARG A 538 -3.00 68.15 REMARK 500 HIS A 586 0.25 -69.35 REMARK 500 TRP A 595 -3.36 77.37 REMARK 500 ARG A 622 107.96 -57.31 REMARK 500 HIS A 659 79.96 -103.48 REMARK 500 MET B 67 37.01 -97.31 REMARK 500 GLN B 178 36.41 -145.49 REMARK 500 THR B 198 -60.67 -93.95 REMARK 500 ILE B 351 -58.82 -129.87 REMARK 500 PRO B 484 57.33 -67.77 REMARK 500 PRO B 508 -177.30 -69.71 REMARK 500 ARG B 538 28.58 44.91 REMARK 500 TYR B 571 64.26 39.89 REMARK 500 TRP B 595 -4.84 71.02 REMARK 500 ARG B 622 108.84 -57.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 514 OG REMARK 620 2 GLN A 544 OE1 92.6 REMARK 620 3 ASP A 629 OD1 83.6 92.7 REMARK 620 4 ATP A 802 O1B 63.9 101.7 144.8 REMARK 620 5 ATP A 802 O1G 118.1 75.9 155.4 59.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 514 OG REMARK 620 2 GLN B 544 OE1 101.7 REMARK 620 3 ATP B 802 O3B 95.6 107.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32930 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ABCD1 E630Q IN THE PRESENCE OF ATP AND REMARK 900 MAGNESIUM IN OUTWARD-FACING STATE DBREF 7X0Z A 1 745 UNP P33897 ABCD1_HUMAN 1 745 DBREF 7X0Z B 1 745 UNP P33897 ABCD1_HUMAN 1 745 SEQADV 7X0Z MET A -17 UNP P33897 INITIATING METHIONINE SEQADV 7X0Z ASP A -16 UNP P33897 EXPRESSION TAG SEQADV 7X0Z TYR A -15 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LYS A -14 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP A -13 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP A -12 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP A -11 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP A -10 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LYS A -9 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLY A -8 UNP P33897 EXPRESSION TAG SEQADV 7X0Z SER A -7 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLU A -6 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASN A -5 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LEU A -4 UNP P33897 EXPRESSION TAG SEQADV 7X0Z TYR A -3 UNP P33897 EXPRESSION TAG SEQADV 7X0Z PHE A -2 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLN A -1 UNP P33897 EXPRESSION TAG SEQADV 7X0Z SER A 0 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLN A 630 UNP P33897 GLU 630 ENGINEERED MUTATION SEQADV 7X0Z MET B -17 UNP P33897 INITIATING METHIONINE SEQADV 7X0Z ASP B -16 UNP P33897 EXPRESSION TAG SEQADV 7X0Z TYR B -15 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LYS B -14 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP B -13 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP B -12 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP B -11 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASP B -10 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LYS B -9 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLY B -8 UNP P33897 EXPRESSION TAG SEQADV 7X0Z SER B -7 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLU B -6 UNP P33897 EXPRESSION TAG SEQADV 7X0Z ASN B -5 UNP P33897 EXPRESSION TAG SEQADV 7X0Z LEU B -4 UNP P33897 EXPRESSION TAG SEQADV 7X0Z TYR B -3 UNP P33897 EXPRESSION TAG SEQADV 7X0Z PHE B -2 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLN B -1 UNP P33897 EXPRESSION TAG SEQADV 7X0Z SER B 0 UNP P33897 EXPRESSION TAG SEQADV 7X0Z GLN B 630 UNP P33897 GLU 630 ENGINEERED MUTATION SEQRES 1 A 763 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER GLU ASN SEQRES 2 A 763 LEU TYR PHE GLN SER MET PRO VAL LEU SER ARG PRO ARG SEQRES 3 A 763 PRO TRP ARG GLY ASN THR LEU LYS ARG THR ALA VAL LEU SEQRES 4 A 763 LEU ALA LEU ALA ALA TYR GLY ALA HIS LYS VAL TYR PRO SEQRES 5 A 763 LEU VAL ARG GLN CYS LEU ALA PRO ALA ARG GLY LEU GLN SEQRES 6 A 763 ALA PRO ALA GLY GLU PRO THR GLN GLU ALA SER GLY VAL SEQRES 7 A 763 ALA ALA ALA LYS ALA GLY MET ASN ARG VAL PHE LEU GLN SEQRES 8 A 763 ARG LEU LEU TRP LEU LEU ARG LEU LEU PHE PRO ARG VAL SEQRES 9 A 763 LEU CYS ARG GLU THR GLY LEU LEU ALA LEU HIS SER ALA SEQRES 10 A 763 ALA LEU VAL SER ARG THR PHE LEU SER VAL TYR VAL ALA SEQRES 11 A 763 ARG LEU ASP GLY ARG LEU ALA ARG CYS ILE VAL ARG LYS SEQRES 12 A 763 ASP PRO ARG ALA PHE GLY TRP GLN LEU LEU GLN TRP LEU SEQRES 13 A 763 LEU ILE ALA LEU PRO ALA THR PHE VAL ASN SER ALA ILE SEQRES 14 A 763 ARG TYR LEU GLU GLY GLN LEU ALA LEU SER PHE ARG SER SEQRES 15 A 763 ARG LEU VAL ALA HIS ALA TYR ARG LEU TYR PHE SER GLN SEQRES 16 A 763 GLN THR TYR TYR ARG VAL SER ASN MET ASP GLY ARG LEU SEQRES 17 A 763 ARG ASN PRO ASP GLN SER LEU THR GLU ASP VAL VAL ALA SEQRES 18 A 763 PHE ALA ALA SER VAL ALA HIS LEU TYR SER ASN LEU THR SEQRES 19 A 763 LYS PRO LEU LEU ASP VAL ALA VAL THR SER TYR THR LEU SEQRES 20 A 763 LEU ARG ALA ALA ARG SER ARG GLY ALA GLY THR ALA TRP SEQRES 21 A 763 PRO SER ALA ILE ALA GLY LEU VAL VAL PHE LEU THR ALA SEQRES 22 A 763 ASN VAL LEU ARG ALA PHE SER PRO LYS PHE GLY GLU LEU SEQRES 23 A 763 VAL ALA GLU GLU ALA ARG ARG LYS GLY GLU LEU ARG TYR SEQRES 24 A 763 MET HIS SER ARG VAL VAL ALA ASN SER GLU GLU ILE ALA SEQRES 25 A 763 PHE TYR GLY GLY HIS GLU VAL GLU LEU ALA LEU LEU GLN SEQRES 26 A 763 ARG SER TYR GLN ASP LEU ALA SER GLN ILE ASN LEU ILE SEQRES 27 A 763 LEU LEU GLU ARG LEU TRP TYR VAL MET LEU GLU GLN PHE SEQRES 28 A 763 LEU MET LYS TYR VAL TRP SER ALA SER GLY LEU LEU MET SEQRES 29 A 763 VAL ALA VAL PRO ILE ILE THR ALA THR GLY TYR SER GLU SEQRES 30 A 763 SER ASP ALA GLU ALA VAL LYS LYS ALA ALA LEU GLU LYS SEQRES 31 A 763 LYS GLU GLU GLU LEU VAL SER GLU ARG THR GLU ALA PHE SEQRES 32 A 763 THR ILE ALA ARG ASN LEU LEU THR ALA ALA ALA ASP ALA SEQRES 33 A 763 ILE GLU ARG ILE MET SER SER TYR LYS GLU VAL THR GLU SEQRES 34 A 763 LEU ALA GLY TYR THR ALA ARG VAL HIS GLU MET PHE GLN SEQRES 35 A 763 VAL PHE GLU ASP VAL GLN ARG CYS HIS PHE LYS ARG PRO SEQRES 36 A 763 ARG GLU LEU GLU ASP ALA GLN ALA GLY SER GLY THR ILE SEQRES 37 A 763 GLY ARG SER GLY VAL ARG VAL GLU GLY PRO LEU LYS ILE SEQRES 38 A 763 ARG GLY GLN VAL VAL ASP VAL GLU GLN GLY ILE ILE CYS SEQRES 39 A 763 GLU ASN ILE PRO ILE VAL THR PRO SER GLY GLU VAL VAL SEQRES 40 A 763 VAL ALA SER LEU ASN ILE ARG VAL GLU GLU GLY MET HIS SEQRES 41 A 763 LEU LEU ILE THR GLY PRO ASN GLY CYS GLY LYS SER SER SEQRES 42 A 763 LEU PHE ARG ILE LEU GLY GLY LEU TRP PRO THR TYR GLY SEQRES 43 A 763 GLY VAL LEU TYR LYS PRO PRO PRO GLN ARG MET PHE TYR SEQRES 44 A 763 ILE PRO GLN ARG PRO TYR MET SER VAL GLY SER LEU ARG SEQRES 45 A 763 ASP GLN VAL ILE TYR PRO ASP SER VAL GLU ASP MET GLN SEQRES 46 A 763 ARG LYS GLY TYR SER GLU GLN ASP LEU GLU ALA ILE LEU SEQRES 47 A 763 ASP VAL VAL HIS LEU HIS HIS ILE LEU GLN ARG GLU GLY SEQRES 48 A 763 GLY TRP GLU ALA MET CYS ASP TRP LYS ASP VAL LEU SER SEQRES 49 A 763 GLY GLY GLU LYS GLN ARG ILE GLY MET ALA ARG MET PHE SEQRES 50 A 763 TYR HIS ARG PRO LYS TYR ALA LEU LEU ASP GLN CYS THR SEQRES 51 A 763 SER ALA VAL SER ILE ASP VAL GLU GLY LYS ILE PHE GLN SEQRES 52 A 763 ALA ALA LYS ASP ALA GLY ILE ALA LEU LEU SER ILE THR SEQRES 53 A 763 HIS ARG PRO SER LEU TRP LYS TYR HIS THR HIS LEU LEU SEQRES 54 A 763 GLN PHE ASP GLY GLU GLY GLY TRP LYS PHE GLU LYS LEU SEQRES 55 A 763 ASP SER ALA ALA ARG LEU SER LEU THR GLU GLU LYS GLN SEQRES 56 A 763 ARG LEU GLU GLN GLN LEU ALA GLY ILE PRO LYS MET GLN SEQRES 57 A 763 ARG ARG LEU GLN GLU LEU CYS GLN ILE LEU GLY GLU ALA SEQRES 58 A 763 VAL ALA PRO ALA HIS VAL PRO ALA PRO SER PRO GLN GLY SEQRES 59 A 763 PRO GLY GLY LEU GLN GLY ALA SER THR SEQRES 1 B 763 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER GLU ASN SEQRES 2 B 763 LEU TYR PHE GLN SER MET PRO VAL LEU SER ARG PRO ARG SEQRES 3 B 763 PRO TRP ARG GLY ASN THR LEU LYS ARG THR ALA VAL LEU SEQRES 4 B 763 LEU ALA LEU ALA ALA TYR GLY ALA HIS LYS VAL TYR PRO SEQRES 5 B 763 LEU VAL ARG GLN CYS LEU ALA PRO ALA ARG GLY LEU GLN SEQRES 6 B 763 ALA PRO ALA GLY GLU PRO THR GLN GLU ALA SER GLY VAL SEQRES 7 B 763 ALA ALA ALA LYS ALA GLY MET ASN ARG VAL PHE LEU GLN SEQRES 8 B 763 ARG LEU LEU TRP LEU LEU ARG LEU LEU PHE PRO ARG VAL SEQRES 9 B 763 LEU CYS ARG GLU THR GLY LEU LEU ALA LEU HIS SER ALA SEQRES 10 B 763 ALA LEU VAL SER ARG THR PHE LEU SER VAL TYR VAL ALA SEQRES 11 B 763 ARG LEU ASP GLY ARG LEU ALA ARG CYS ILE VAL ARG LYS SEQRES 12 B 763 ASP PRO ARG ALA PHE GLY TRP GLN LEU LEU GLN TRP LEU SEQRES 13 B 763 LEU ILE ALA LEU PRO ALA THR PHE VAL ASN SER ALA ILE SEQRES 14 B 763 ARG TYR LEU GLU GLY GLN LEU ALA LEU SER PHE ARG SER SEQRES 15 B 763 ARG LEU VAL ALA HIS ALA TYR ARG LEU TYR PHE SER GLN SEQRES 16 B 763 GLN THR TYR TYR ARG VAL SER ASN MET ASP GLY ARG LEU SEQRES 17 B 763 ARG ASN PRO ASP GLN SER LEU THR GLU ASP VAL VAL ALA SEQRES 18 B 763 PHE ALA ALA SER VAL ALA HIS LEU TYR SER ASN LEU THR SEQRES 19 B 763 LYS PRO LEU LEU ASP VAL ALA VAL THR SER TYR THR LEU SEQRES 20 B 763 LEU ARG ALA ALA ARG SER ARG GLY ALA GLY THR ALA TRP SEQRES 21 B 763 PRO SER ALA ILE ALA GLY LEU VAL VAL PHE LEU THR ALA SEQRES 22 B 763 ASN VAL LEU ARG ALA PHE SER PRO LYS PHE GLY GLU LEU SEQRES 23 B 763 VAL ALA GLU GLU ALA ARG ARG LYS GLY GLU LEU ARG TYR SEQRES 24 B 763 MET HIS SER ARG VAL VAL ALA ASN SER GLU GLU ILE ALA SEQRES 25 B 763 PHE TYR GLY GLY HIS GLU VAL GLU LEU ALA LEU LEU GLN SEQRES 26 B 763 ARG SER TYR GLN ASP LEU ALA SER GLN ILE ASN LEU ILE SEQRES 27 B 763 LEU LEU GLU ARG LEU TRP TYR VAL MET LEU GLU GLN PHE SEQRES 28 B 763 LEU MET LYS TYR VAL TRP SER ALA SER GLY LEU LEU MET SEQRES 29 B 763 VAL ALA VAL PRO ILE ILE THR ALA THR GLY TYR SER GLU SEQRES 30 B 763 SER ASP ALA GLU ALA VAL LYS LYS ALA ALA LEU GLU LYS SEQRES 31 B 763 LYS GLU GLU GLU LEU VAL SER GLU ARG THR GLU ALA PHE SEQRES 32 B 763 THR ILE ALA ARG ASN LEU LEU THR ALA ALA ALA ASP ALA SEQRES 33 B 763 ILE GLU ARG ILE MET SER SER TYR LYS GLU VAL THR GLU SEQRES 34 B 763 LEU ALA GLY TYR THR ALA ARG VAL HIS GLU MET PHE GLN SEQRES 35 B 763 VAL PHE GLU ASP VAL GLN ARG CYS HIS PHE LYS ARG PRO SEQRES 36 B 763 ARG GLU LEU GLU ASP ALA GLN ALA GLY SER GLY THR ILE SEQRES 37 B 763 GLY ARG SER GLY VAL ARG VAL GLU GLY PRO LEU LYS ILE SEQRES 38 B 763 ARG GLY GLN VAL VAL ASP VAL GLU GLN GLY ILE ILE CYS SEQRES 39 B 763 GLU ASN ILE PRO ILE VAL THR PRO SER GLY GLU VAL VAL SEQRES 40 B 763 VAL ALA SER LEU ASN ILE ARG VAL GLU GLU GLY MET HIS SEQRES 41 B 763 LEU LEU ILE THR GLY PRO ASN GLY CYS GLY LYS SER SER SEQRES 42 B 763 LEU PHE ARG ILE LEU GLY GLY LEU TRP PRO THR TYR GLY SEQRES 43 B 763 GLY VAL LEU TYR LYS PRO PRO PRO GLN ARG MET PHE TYR SEQRES 44 B 763 ILE PRO GLN ARG PRO TYR MET SER VAL GLY SER LEU ARG SEQRES 45 B 763 ASP GLN VAL ILE TYR PRO ASP SER VAL GLU ASP MET GLN SEQRES 46 B 763 ARG LYS GLY TYR SER GLU GLN ASP LEU GLU ALA ILE LEU SEQRES 47 B 763 ASP VAL VAL HIS LEU HIS HIS ILE LEU GLN ARG GLU GLY SEQRES 48 B 763 GLY TRP GLU ALA MET CYS ASP TRP LYS ASP VAL LEU SER SEQRES 49 B 763 GLY GLY GLU LYS GLN ARG ILE GLY MET ALA ARG MET PHE SEQRES 50 B 763 TYR HIS ARG PRO LYS TYR ALA LEU LEU ASP GLN CYS THR SEQRES 51 B 763 SER ALA VAL SER ILE ASP VAL GLU GLY LYS ILE PHE GLN SEQRES 52 B 763 ALA ALA LYS ASP ALA GLY ILE ALA LEU LEU SER ILE THR SEQRES 53 B 763 HIS ARG PRO SER LEU TRP LYS TYR HIS THR HIS LEU LEU SEQRES 54 B 763 GLN PHE ASP GLY GLU GLY GLY TRP LYS PHE GLU LYS LEU SEQRES 55 B 763 ASP SER ALA ALA ARG LEU SER LEU THR GLU GLU LYS GLN SEQRES 56 B 763 ARG LEU GLU GLN GLN LEU ALA GLY ILE PRO LYS MET GLN SEQRES 57 B 763 ARG ARG LEU GLN GLU LEU CYS GLN ILE LEU GLY GLU ALA SEQRES 58 B 763 VAL ALA PRO ALA HIS VAL PRO ALA PRO SER PRO GLN GLY SEQRES 59 B 763 PRO GLY GLY LEU GLN GLY ALA SER THR HET MG A 801 1 HET ATP A 802 31 HET MG B 801 1 HET ATP B 802 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) HELIX 1 AA1 ASN A 68 PHE A 83 1 16 HELIX 2 AA2 CYS A 88 ARG A 124 1 37 HELIX 3 AA3 ARG A 128 PHE A 175 1 48 HELIX 4 AA4 GLN A 178 MET A 186 1 9 HELIX 5 AA5 ASN A 192 ARG A 236 1 45 HELIX 6 AA6 ALA A 241 SER A 262 1 22 HELIX 7 AA7 LYS A 264 ASN A 289 1 26 HELIX 8 AA8 ASN A 289 GLY A 297 1 9 HELIX 9 AA9 GLY A 298 MET A 335 1 38 HELIX 10 AB1 VAL A 338 MET A 346 1 9 HELIX 11 AB2 GLU A 380 SER A 404 1 25 HELIX 12 AB3 SER A 405 ARG A 431 1 27 HELIX 13 AB4 GLY A 512 GLY A 521 1 10 HELIX 14 AB5 SER A 552 ILE A 558 1 7 HELIX 15 AB6 SER A 562 LYS A 569 1 8 HELIX 16 AB7 SER A 572 ASP A 581 1 10 HELIX 17 AB8 HIS A 586 ARG A 591 1 6 HELIX 18 AB9 ASP A 600 LEU A 605 1 6 HELIX 19 AC1 SER A 606 HIS A 621 1 16 HELIX 20 AC2 SER A 636 ALA A 650 1 15 HELIX 21 AC3 ARG A 660 HIS A 667 5 8 HELIX 22 AC4 ASN B 68 PHE B 83 1 16 HELIX 23 AC5 CYS B 88 VAL B 123 1 36 HELIX 24 AC6 ASP B 126 ILE B 140 1 15 HELIX 25 AC7 ALA B 141 PHE B 175 1 35 HELIX 26 AC8 GLN B 178 MET B 186 1 9 HELIX 27 AC9 ASN B 192 SER B 235 1 44 HELIX 28 AD1 THR B 240 SER B 262 1 23 HELIX 29 AD2 LYS B 264 ASN B 289 1 26 HELIX 30 AD3 ASN B 289 GLY B 297 1 9 HELIX 31 AD4 GLY B 298 MET B 335 1 38 HELIX 32 AD5 TYR B 337 VAL B 347 1 11 HELIX 33 AD6 SER B 379 SER B 404 1 26 HELIX 34 AD7 SER B 405 ARG B 431 1 27 HELIX 35 AD8 GLY B 512 GLY B 521 1 10 HELIX 36 AD9 SER B 552 ILE B 558 1 7 HELIX 37 AE1 SER B 562 LYS B 569 1 8 HELIX 38 AE2 SER B 572 VAL B 583 1 12 HELIX 39 AE3 LEU B 585 ARG B 591 5 7 HELIX 40 AE4 ASP B 600 LEU B 605 1 6 HELIX 41 AE5 GLY B 608 HIS B 621 1 14 HELIX 42 AE6 SER B 636 ALA B 650 1 15 HELIX 43 AE7 ARG B 660 HIS B 667 5 8 SHEET 1 AA1 4 GLN A 466 ASP A 469 0 SHEET 2 AA1 4 VAL A 530 LYS A 533 1 O LYS A 533 N VAL A 468 SHEET 3 AA1 4 ILE A 474 VAL A 482 -1 N ILE A 475 O TYR A 532 SHEET 4 AA1 4 VAL A 488 VAL A 497 -1 O ILE A 495 N CYS A 476 SHEET 1 AA2 4 LEU A 503 LEU A 504 0 SHEET 2 AA2 4 ALA A 653 ILE A 657 1 O SER A 656 N LEU A 503 SHEET 3 AA2 4 TYR A 625 ASP A 629 1 N LEU A 628 O ILE A 657 SHEET 4 AA2 4 MET A 539 ILE A 542 1 N PHE A 540 O LEU A 627 SHEET 1 AA3 4 VAL B 467 ASP B 469 0 SHEET 2 AA3 4 LEU B 531 LYS B 533 1 O LYS B 533 N VAL B 468 SHEET 3 AA3 4 ILE B 474 VAL B 482 -1 N ILE B 475 O TYR B 532 SHEET 4 AA3 4 VAL B 488 VAL B 497 -1 O VAL B 489 N ILE B 481 SHEET 1 AA4 4 LEU B 503 LEU B 504 0 SHEET 2 AA4 4 ALA B 653 ILE B 657 1 O SER B 656 N LEU B 503 SHEET 3 AA4 4 TYR B 625 ASP B 629 1 N LEU B 628 O ILE B 657 SHEET 4 AA4 4 MET B 539 ILE B 542 1 N PHE B 540 O LEU B 627 LINK OG SER A 514 MG MG A 801 1555 1555 1.97 LINK OE1 GLN A 544 MG MG A 801 1555 1555 2.69 LINK OD1 ASP A 629 MG MG A 801 1555 1555 2.81 LINK MG MG A 801 O1B ATP A 802 1555 1555 2.87 LINK MG MG A 801 O1G ATP A 802 1555 1555 2.23 LINK OG SER B 514 MG MG B 801 1555 1555 2.05 LINK OE1 GLN B 544 MG MG B 801 1555 1555 2.07 LINK MG MG B 801 O3B ATP B 802 1555 1555 2.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000