HEADER TRANSCRIPTION/DNA 24-FEB-22 7X1N TITLE CRYSTAL STRUCTURE OF MEF2D-MRE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*G)-3'); COMPND 3 CHAIN: K, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*T)-3'); COMPND 7 CHAIN: L, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MYOCYTE ENHANCER FACTOR 2D/DELETED IN AZOOSPERMIA COMPND 11 ASSOCIATED PROTEIN 1 FUSION PROTEIN; COMPND 12 CHAIN: B, C, A, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: MEF2D/DAZAP1 FUSION; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACUTE LYMPHOBLASTIC LEUKEMIA, MEF2D-FUSIONS, MEF2D-HNRNPUL1, MEF2D- KEYWDS 2 DNA INTERACTION, LEUKEMOGENESIS, PROGNOSTIC MARKERS, TRANSCRIPTION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,M.ZHANG,Q.Q.WANG,Z.CHEN,S.J.CHEN,G.MENG REVDAT 3 29-NOV-23 7X1N 1 REMARK REVDAT 2 05-OCT-22 7X1N 1 JRNL REVDAT 1 25-MAY-22 7X1N 0 JRNL AUTH M.ZHANG,H.ZHANG,Z.LI,L.BAI,Q.WANG,J.LI,M.JIANG,Q.XUE, JRNL AUTH 2 N.CHENG,W.ZHANG,D.MAO,Z.CHEN,J.HUANG,G.MENG,Z.CHEN,S.J.CHEN JRNL TITL FUNCTIONAL, STRUCTURAL, AND MOLECULAR CHARACTERIZATIONS OF JRNL TITL 2 THE LEUKEMOGENIC DRIVER MEF2D-HNRNPUL1 FUSION. JRNL REF BLOOD V. 140 1390 2022 JRNL REFN ESSN 1528-0020 JRNL PMID 35544603 JRNL DOI 10.1182/BLOOD.2022016241 REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 9415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9920 - 4.7806 1.00 3187 189 0.2166 0.2383 REMARK 3 2 4.7806 - 3.7950 1.00 3072 166 0.2365 0.2967 REMARK 3 3 3.7950 - 3.3154 0.87 2694 107 0.2920 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'K' AND RESID 2 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2352 13.0592 6.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: 0.6201 REMARK 3 T33: 0.4255 T12: 0.1072 REMARK 3 T13: -0.3332 T23: -0.1417 REMARK 3 L TENSOR REMARK 3 L11: 0.0556 L22: 0.0083 REMARK 3 L33: 0.0701 L12: 0.0193 REMARK 3 L13: 0.0193 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0634 S13: -0.0139 REMARK 3 S21: 0.0531 S22: -0.0656 S23: -0.0359 REMARK 3 S31: -0.0647 S32: 0.0490 S33: 0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'L' AND RESID 2 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5023 8.0206 7.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.5782 T22: 0.8641 REMARK 3 T33: 0.6635 T12: 0.0719 REMARK 3 T13: -0.3419 T23: -0.1679 REMARK 3 L TENSOR REMARK 3 L11: 0.0711 L22: 0.0218 REMARK 3 L33: 0.0276 L12: -0.0011 REMARK 3 L13: 0.0410 L23: -0.0015 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.1021 S13: -0.0094 REMARK 3 S21: 0.0895 S22: -0.0791 S23: -0.0006 REMARK 3 S31: 0.0239 S32: 0.0118 S33: -0.0487 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 2 THROUGH 15) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5759 24.3837 -62.1280 REMARK 3 T TENSOR REMARK 3 T11: 1.0335 T22: 0.8180 REMARK 3 T33: 0.5862 T12: 0.1518 REMARK 3 T13: -0.1675 T23: 0.3555 REMARK 3 L TENSOR REMARK 3 L11: 0.0108 L22: 0.0456 REMARK 3 L33: 0.1054 L12: -0.0117 REMARK 3 L13: 0.0239 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.0088 S13: 0.0694 REMARK 3 S21: -0.0091 S22: 0.0359 S23: 0.0091 REMARK 3 S31: -0.0317 S32: 0.0351 S33: 0.0169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 2 THROUGH 15) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2881 22.0851 -62.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.7488 T22: 0.5147 REMARK 3 T33: 0.4034 T12: 0.0021 REMARK 3 T13: 0.0139 T23: 0.2848 REMARK 3 L TENSOR REMARK 3 L11: 0.0589 L22: 0.0977 REMARK 3 L33: 0.0173 L12: 0.0129 REMARK 3 L13: -0.0175 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: 0.0523 S13: 0.0375 REMARK 3 S21: -0.0345 S22: 0.0626 S23: 0.0954 REMARK 3 S31: -0.0751 S32: -0.0261 S33: -0.1121 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 5 THROUGH 92) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7973 16.6392 -43.1751 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.2001 REMARK 3 T33: 0.1934 T12: -0.0334 REMARK 3 T13: -0.0817 T23: 0.1859 REMARK 3 L TENSOR REMARK 3 L11: 0.0273 L22: 0.0196 REMARK 3 L33: 0.2309 L12: -0.0069 REMARK 3 L13: -0.0561 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.0251 S13: 0.0246 REMARK 3 S21: -0.0494 S22: -0.0063 S23: 0.0157 REMARK 3 S31: -0.1004 S32: 0.0390 S33: 0.2758 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 93) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6715 11.4642 -47.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.2705 REMARK 3 T33: 0.2337 T12: -0.0942 REMARK 3 T13: -0.0086 T23: 0.1649 REMARK 3 L TENSOR REMARK 3 L11: 0.0299 L22: 0.0327 REMARK 3 L33: 0.0440 L12: 0.0143 REMARK 3 L13: -0.0071 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.0089 S13: -0.0242 REMARK 3 S21: -0.0617 S22: -0.0696 S23: -0.0326 REMARK 3 S31: 0.0066 S32: 0.1277 S33: -0.2321 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 5 THROUGH 93) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0839 11.1371 -7.9741 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.1654 REMARK 3 T33: 0.2778 T12: -0.0549 REMARK 3 T13: -0.2463 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.3443 L22: 0.0076 REMARK 3 L33: 0.0777 L12: 0.0124 REMARK 3 L13: 0.1633 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.2110 S12: -0.0995 S13: 0.3369 REMARK 3 S21: 0.1184 S22: 0.0303 S23: -0.1217 REMARK 3 S31: -0.1855 S32: -0.0527 S33: -0.1569 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 4 THROUGH 92) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1227 10.0100 -11.3056 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.1547 REMARK 3 T33: 0.1734 T12: 0.0456 REMARK 3 T13: -0.3849 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 0.0914 L22: 0.0711 REMARK 3 L33: 0.3433 L12: -0.0557 REMARK 3 L13: -0.0204 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.1235 S12: -0.1311 S13: 0.2716 REMARK 3 S21: 0.1166 S22: 0.1147 S23: -0.1598 REMARK 3 S31: -0.1529 S32: 0.1545 S33: 0.2083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7X1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9418 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.315 REMARK 200 RESOLUTION RANGE LOW (A) : 47.992 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BYY REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, EVAPORATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.43150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.43150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.82550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA K 15 REMARK 465 DT L 1 REMARK 465 DT L 15 REMARK 465 DT F 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLU B 0 REMARK 465 PHE B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 93 REMARK 465 ASN B 94 REMARK 465 GLY B 95 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLU C 0 REMARK 465 PHE C 1 REMARK 465 ASN C 94 REMARK 465 GLY C 95 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLU A 0 REMARK 465 PHE A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 94 REMARK 465 GLY A 95 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 GLU D 0 REMARK 465 PHE D 1 REMARK 465 GLY D 2 REMARK 465 ARG D 3 REMARK 465 PHE D 93 REMARK 465 ASN D 94 REMARK 465 GLY D 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 81 HH TYR D 57 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 89 CZ ARG A 89 NH1 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 CB - CG - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 11 109.10 -59.24 REMARK 500 ASP B 40 79.93 51.81 REMARK 500 ASN B 49 -172.31 -69.78 REMARK 500 THR B 60 -135.87 -124.44 REMARK 500 LYS B 68 -37.62 -34.16 REMARK 500 LYS B 91 80.97 -169.16 REMARK 500 ASP C 40 81.18 48.80 REMARK 500 THR C 60 -126.68 -123.23 REMARK 500 LYS C 68 -38.53 -34.14 REMARK 500 LYS C 91 72.68 -166.80 REMARK 500 ASP A 40 79.69 55.38 REMARK 500 ASN A 49 -169.47 -75.82 REMARK 500 THR A 60 -129.02 -126.59 REMARK 500 LYS A 68 -39.39 -34.46 REMARK 500 LYS A 91 72.03 -168.17 REMARK 500 ASP D 40 84.29 50.62 REMARK 500 THR D 60 -121.52 -124.11 REMARK 500 LYS D 91 89.69 -166.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7X1N K 2 15 PDB 7X1N 7X1N 2 15 DBREF 7X1N L 1 15 PDB 7X1N 7X1N 1 15 DBREF 7X1N E 2 15 PDB 7X1N 7X1N 2 15 DBREF 7X1N F 1 15 PDB 7X1N 7X1N 1 15 DBREF 7X1N B 2 95 UNP Q5IRN4 Q5IRN4_HUMAN 2 95 DBREF 7X1N C 2 95 UNP Q5IRN4 Q5IRN4_HUMAN 2 95 DBREF 7X1N A 2 95 UNP Q5IRN4 Q5IRN4_HUMAN 2 95 DBREF 7X1N D 2 95 UNP Q5IRN4 Q5IRN4_HUMAN 2 95 SEQADV 7X1N GLY B -2 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N SER B -1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLU B 0 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N PHE B 1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLY C -2 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N SER C -1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLU C 0 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N PHE C 1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLY A -2 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N SER A -1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLU A 0 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N PHE A 1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLY D -2 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N SER D -1 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N GLU D 0 UNP Q5IRN4 EXPRESSION TAG SEQADV 7X1N PHE D 1 UNP Q5IRN4 EXPRESSION TAG SEQRES 1 K 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 K 14 DA SEQRES 1 L 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 L 15 DT DT SEQRES 1 E 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 E 14 DA SEQRES 1 F 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 F 15 DT DT SEQRES 1 B 98 GLY SER GLU PHE GLY ARG LYS LYS ILE GLN ILE GLN ARG SEQRES 2 B 98 ILE THR ASP GLU ARG ASN ARG GLN VAL THR PHE THR LYS SEQRES 3 B 98 ARG LYS PHE GLY LEU MET LYS LYS ALA TYR GLU LEU SER SEQRES 4 B 98 VAL LEU CYS ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SEQRES 5 B 98 HIS SER ASN LYS LEU PHE GLN TYR ALA SER THR ASP MET SEQRES 6 B 98 ASP LYS VAL LEU LEU LYS TYR THR GLU TYR ASN GLU PRO SEQRES 7 B 98 HIS GLU SER ARG THR ASN ALA ASP ILE ILE GLU THR LEU SEQRES 8 B 98 ARG LYS LYS GLY PHE ASN GLY SEQRES 1 C 98 GLY SER GLU PHE GLY ARG LYS LYS ILE GLN ILE GLN ARG SEQRES 2 C 98 ILE THR ASP GLU ARG ASN ARG GLN VAL THR PHE THR LYS SEQRES 3 C 98 ARG LYS PHE GLY LEU MET LYS LYS ALA TYR GLU LEU SER SEQRES 4 C 98 VAL LEU CYS ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SEQRES 5 C 98 HIS SER ASN LYS LEU PHE GLN TYR ALA SER THR ASP MET SEQRES 6 C 98 ASP LYS VAL LEU LEU LYS TYR THR GLU TYR ASN GLU PRO SEQRES 7 C 98 HIS GLU SER ARG THR ASN ALA ASP ILE ILE GLU THR LEU SEQRES 8 C 98 ARG LYS LYS GLY PHE ASN GLY SEQRES 1 A 98 GLY SER GLU PHE GLY ARG LYS LYS ILE GLN ILE GLN ARG SEQRES 2 A 98 ILE THR ASP GLU ARG ASN ARG GLN VAL THR PHE THR LYS SEQRES 3 A 98 ARG LYS PHE GLY LEU MET LYS LYS ALA TYR GLU LEU SER SEQRES 4 A 98 VAL LEU CYS ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SEQRES 5 A 98 HIS SER ASN LYS LEU PHE GLN TYR ALA SER THR ASP MET SEQRES 6 A 98 ASP LYS VAL LEU LEU LYS TYR THR GLU TYR ASN GLU PRO SEQRES 7 A 98 HIS GLU SER ARG THR ASN ALA ASP ILE ILE GLU THR LEU SEQRES 8 A 98 ARG LYS LYS GLY PHE ASN GLY SEQRES 1 D 98 GLY SER GLU PHE GLY ARG LYS LYS ILE GLN ILE GLN ARG SEQRES 2 D 98 ILE THR ASP GLU ARG ASN ARG GLN VAL THR PHE THR LYS SEQRES 3 D 98 ARG LYS PHE GLY LEU MET LYS LYS ALA TYR GLU LEU SER SEQRES 4 D 98 VAL LEU CYS ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SEQRES 5 D 98 HIS SER ASN LYS LEU PHE GLN TYR ALA SER THR ASP MET SEQRES 6 D 98 ASP LYS VAL LEU LEU LYS TYR THR GLU TYR ASN GLU PRO SEQRES 7 D 98 HIS GLU SER ARG THR ASN ALA ASP ILE ILE GLU THR LEU SEQRES 8 D 98 ARG LYS LYS GLY PHE ASN GLY FORMUL 9 HOH *6(H2 O) HELIX 1 AA1 ASP B 13 CYS B 39 1 27 HELIX 2 AA2 ASP B 61 TYR B 72 1 12 HELIX 3 AA3 ASN B 81 ARG B 89 1 9 HELIX 4 AA4 ASP C 13 CYS C 39 1 27 HELIX 5 AA5 ASP C 61 TYR C 72 1 12 HELIX 6 AA6 ASN C 81 ARG C 89 1 9 HELIX 7 AA7 ASP A 13 CYS A 39 1 27 HELIX 8 AA8 ASP A 61 TYR A 72 1 12 HELIX 9 AA9 THR A 80 ARG A 89 1 10 HELIX 10 AB1 ASP D 13 CYS D 39 1 27 HELIX 11 AB2 ASP D 61 TYR D 72 1 12 HELIX 12 AB3 THR D 80 ARG D 89 1 10 SHEET 1 AA1 6 GLU B 77 THR B 80 0 SHEET 2 AA1 6 LEU C 54 ALA C 58 1 O GLN C 56 N ARG B 79 SHEET 3 AA1 6 GLU C 42 PHE C 48 -1 N LEU C 45 O TYR C 57 SHEET 4 AA1 6 GLU B 42 PHE B 48 -1 N PHE B 48 O GLU C 42 SHEET 5 AA1 6 LEU B 54 ALA B 58 -1 O TYR B 57 N LEU B 45 SHEET 6 AA1 6 GLU C 77 THR C 80 1 O ARG C 79 N GLN B 56 SHEET 1 AA2 6 GLU A 77 ARG A 79 0 SHEET 2 AA2 6 LEU D 54 ALA D 58 1 O GLN D 56 N ARG A 79 SHEET 3 AA2 6 GLU D 42 PHE D 48 -1 N LEU D 45 O TYR D 57 SHEET 4 AA2 6 GLU A 42 PHE A 48 -1 N PHE A 48 O GLU D 42 SHEET 5 AA2 6 LEU A 54 ALA A 58 -1 O TYR A 57 N LEU A 45 SHEET 6 AA2 6 GLU D 77 ARG D 79 1 O ARG D 79 N GLN A 56 CRYST1 74.863 75.651 111.102 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009001 0.00000