HEADER BIOSYNTHETIC PROTEIN 25-FEB-22 7X2N TITLE CRYSTAL STRUCTURE OF DIELS-ALDERASE PYCR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYCR1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOBACILLIUM SP.; SOURCE 3 ORGANISM_TAXID: 2011797; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIELS-ALDERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHOU,J.LU REVDAT 2 29-NOV-23 7X2N 1 REMARK REVDAT 1 05-APR-23 7X2N 0 JRNL AUTH J.ZHOU,J.LU JRNL TITL CRYSTAL STRUCTURE OF HETERO-DIELS-ALDERASE PYCR1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8300 - 4.6700 1.00 2870 148 0.1526 0.1564 REMARK 3 2 4.6700 - 3.7100 1.00 2721 119 0.1275 0.1564 REMARK 3 3 3.7000 - 3.2400 1.00 2646 164 0.1535 0.1597 REMARK 3 4 3.2400 - 2.9400 1.00 2667 132 0.1590 0.2001 REMARK 3 5 2.9400 - 2.7300 1.00 2625 148 0.1643 0.1790 REMARK 3 6 2.7300 - 2.5700 1.00 2604 135 0.1636 0.2219 REMARK 3 7 2.5700 - 2.4400 1.00 2602 151 0.1664 0.1896 REMARK 3 8 2.4400 - 2.3300 1.00 2602 132 0.1691 0.1850 REMARK 3 9 2.3300 - 2.2400 1.00 2597 123 0.1612 0.2228 REMARK 3 10 2.2400 - 2.1700 1.00 2625 114 0.1658 0.1933 REMARK 3 11 2.1700 - 2.1000 1.00 2610 134 0.1721 0.2054 REMARK 3 12 2.1000 - 2.0400 1.00 2582 137 0.1733 0.2241 REMARK 3 13 2.0400 - 1.9900 1.00 2585 129 0.1736 0.1838 REMARK 3 14 1.9900 - 1.9400 1.00 2563 146 0.1876 0.2487 REMARK 3 15 1.9400 - 1.8900 1.00 2571 133 0.1954 0.2208 REMARK 3 16 1.8900 - 1.8500 1.00 2577 133 0.1868 0.2402 REMARK 3 17 1.8500 - 1.8200 1.00 2544 144 0.1946 0.2268 REMARK 3 18 1.8200 - 1.7800 1.00 2549 150 0.2143 0.2608 REMARK 3 19 1.7800 - 1.7500 1.00 2580 136 0.2425 0.2673 REMARK 3 20 1.7500 - 1.7200 1.00 2579 130 0.2731 0.3007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.179 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2974 REMARK 3 ANGLE : 1.471 4067 REMARK 3 CHIRALITY : 0.107 483 REMARK 3 PLANARITY : 0.010 503 REMARK 3 DIHEDRAL : 14.114 498 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7X2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300027882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 45.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.70 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2P4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-SODIUM CITRATE, 20% REMARK 280 (W/V)PEG4000, 5% (W/V)ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.00050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.16050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.16050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.00075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.16050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.16050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.00025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.16050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.16050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.00075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.16050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.16050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.00025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.00050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 909 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1114 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ILE A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 ILE A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ASP A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 96 -98.35 -118.01 REMARK 500 THR A 101 -108.25 -105.01 REMARK 500 HIS A 155 -72.95 -97.51 REMARK 500 GLN A 158 -77.07 -128.83 REMARK 500 ASP A 166 75.71 -160.33 REMARK 500 TYR A 176 -152.24 -175.27 REMARK 500 ASP A 224 -167.31 -169.20 REMARK 500 ASN A 228 -108.09 -124.92 REMARK 500 ARG A 234 -129.47 53.16 REMARK 500 ASP A 275 -68.05 -132.33 REMARK 500 GLU A 282 -114.07 43.72 REMARK 500 ASN A 315 -132.58 55.84 REMARK 500 ASP A 332 26.52 -142.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1168 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1170 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1171 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1172 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1173 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1176 DISTANCE = 6.94 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 602 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 EDO A 603 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE1 REMARK 620 2 GLN A 158 OE1 82.6 REMARK 620 3 ASN A 228 OD1 160.1 78.5 REMARK 620 4 ASP A 275 OD1 112.0 156.7 84.2 REMARK 620 N 1 2 3 DBREF 7X2N A -19 368 PDB 7X2N 7X2N -19 368 SEQRES 1 A 388 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 388 LEU VAL PRO ARG GLY SER HIS MET LYS LEU LEU ALA THR SEQRES 3 A 388 ALA ILE ALA GLY LEU ALA ILE VAL GLY GLN PRO LEU ALA SEQRES 4 A 388 SER ALA SER PRO THR ALA ARG THR ASP VAL LYS LEU PRO SEQRES 5 A 388 LEU PRO GLN ARG LEU LEU HIS ASP TRP ALA ASN GLY SER SEQRES 6 A 388 TRP VAL GLU ASN ILE SER VAL ARG PRO ASN GLY ASN LEU SEQRES 7 A 388 LEU VAL SER THR SER THR PRO ASP GLY SER VAL TRP GLN SEQRES 8 A 388 ILE LYS GLU PRO TRP LYS ASP GLN PRO GLU VAL GLU LEU SEQRES 9 A 388 VAL TYR ASN PHE ASP GLN TRP VAL ASP ARG LEU ILE GLY SEQRES 10 A 388 ILE GLY GLU THR THR PRO ASP LYS TYR VAL VAL VAL GLY SEQRES 11 A 388 SER ARG PHE TYR SER THR ASP PRO MET SER SER HIS VAL SEQRES 12 A 388 ASP ARG THR PHE ALA ALA MET GLU LEU ASP PHE SER GLY SEQRES 13 A 388 SER ALA ASN LYS ASP LYS PRO ALA VAL ARG LEU ILE ALA SEQRES 14 A 388 TRP PHE PRO ASP ALA HIS LEU LEU GLN GLY VAL ALA ALA SEQRES 15 A 388 LEU PRO TRP ASP ARG THR LYS VAL LEU ILE SER ASP GLN SEQRES 16 A 388 TYR LEU LEU ARG PRO ARG ALA ALA PRO GLN LYS ASP TRP SEQRES 17 A 388 THR PRO ALA ARG GLY GLN VAL TRP THR LEU ASP THR VAL SEQRES 18 A 388 THR GLY ALA HIS GLU VAL VAL PHE ALA ASN ASP THR ALA SEQRES 19 A 388 LEU ASP THR THR TYR ARG HIS GLY TYR ASP VAL GLY ILE SEQRES 20 A 388 ASN GLY ILE LYS ILE ARG ARG ASP TRP LEU TYR TRP VAL SEQRES 21 A 388 ASN SER ASP ASP GLY ASN ILE TYR ARG LEU LYS ILE ASP SEQRES 22 A 388 LYS THR GLY HIS ALA VAL PRO PRO ALA LYS PRO GLU VAL SEQRES 23 A 388 VAL ALA PHE GLN ASP THR ILE TRP ASP ASP PHE THR PHE SEQRES 24 A 388 GLY PRO GLU HIS GLU ASP THR ILE TRP ALA THR GLY PHE SEQRES 25 A 388 ASN ALA ILE PHE ALA ALA SER PRO GLN GLY LYS VAL VAL SEQRES 26 A 388 THR VAL ASN GLY VAL GLY THR SER ASP ASN GLY ILE MET SEQRES 27 A 388 PRO GLY PRO THR ALA CYS ALA PHE GLY ARG SER PRO HIS SEQRES 28 A 388 ASP ARG ASN ILE LEU TYR VAL THR GLY ASN MET GLY GLU SEQRES 29 A 388 ILE PRO VAL ASP ILE GLU HIS VAL HIS LEU LYS GLY TRP SEQRES 30 A 388 VAL ARG ALA ILE ASP THR THR GLY PHE HIS PHE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET GOL A 601 6 HET MAN A 602 11 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET CA A 606 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 8(C6 H12 O6) FORMUL 4 GOL C3 H8 O3 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 CA CA 2+ FORMUL 10 HOH *476(H2 O) HELIX 1 AA1 ASP A 212 ASP A 216 5 5 SHEET 1 AA1 4 GLN A 35 ASN A 43 0 SHEET 2 AA1 4 LEU A 354 ASP A 362 -1 O GLY A 356 N TRP A 41 SHEET 3 AA1 4 ILE A 335 MET A 342 -1 N VAL A 338 O ARG A 359 SHEET 4 AA1 4 PRO A 321 PHE A 326 -1 N THR A 322 O THR A 339 SHEET 1 AA2 4 TRP A 46 VAL A 52 0 SHEET 2 AA2 4 LEU A 58 THR A 64 -1 O SER A 61 N GLU A 48 SHEET 3 AA2 4 SER A 68 LYS A 73 -1 O TRP A 70 N VAL A 60 SHEET 4 AA2 4 GLU A 81 ASN A 87 -1 O GLU A 83 N GLN A 71 SHEET 1 AA3 4 ARG A 94 GLU A 100 0 SHEET 2 AA3 4 LYS A 105 SER A 111 -1 O VAL A 109 N ILE A 96 SHEET 3 AA3 4 ALA A 128 ASP A 133 -1 O MET A 130 N VAL A 108 SHEET 4 AA3 4 ALA A 144 TRP A 150 -1 O ARG A 146 N GLU A 131 SHEET 1 AA4 4 LEU A 157 LEU A 163 0 SHEET 2 AA4 4 ASP A 166 ASP A 174 -1 O LEU A 171 N ALA A 161 SHEET 3 AA4 4 GLN A 194 ASP A 199 -1 O TRP A 196 N ILE A 172 SHEET 4 AA4 4 HIS A 205 ALA A 210 -1 O VAL A 208 N VAL A 195 SHEET 1 AA5 4 ILE A 227 ARG A 233 0 SHEET 2 AA5 4 TRP A 236 ASN A 241 -1 O TYR A 238 N LYS A 231 SHEET 3 AA5 4 ASN A 246 LYS A 251 -1 O TYR A 248 N TRP A 239 SHEET 4 AA5 4 GLU A 265 PHE A 269 -1 O VAL A 267 N ILE A 247 SHEET 1 AA6 4 PHE A 277 PHE A 279 0 SHEET 2 AA6 4 ILE A 287 GLY A 291 -1 O TRP A 288 N THR A 278 SHEET 3 AA6 4 ALA A 294 ALA A 298 -1 O ALA A 298 N ILE A 287 SHEET 4 AA6 4 VAL A 304 GLY A 309 -1 O VAL A 305 N ALA A 297 LINK ND2 ASN A 43 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 211 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.43 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O6 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O6 MAN C 4 C1 MAN C 6 1555 1555 1.44 LINK OE1 GLU A 48 CA CA A 606 1555 1555 2.34 LINK OE1 GLN A 158 CA CA A 606 1555 1555 2.35 LINK OD1 ASN A 228 CA CA A 606 1555 1555 2.42 LINK OD1 ASP A 275 CA CA A 606 1555 1555 2.41 CISPEP 1 LEU A 31 PRO A 32 0 2.62 CISPEP 2 THR A 64 PRO A 65 0 -4.85 CISPEP 3 ALA A 183 PRO A 184 0 2.37 CISPEP 4 PRO A 260 PRO A 261 0 10.26 CISPEP 5 GLY A 280 PRO A 281 0 -2.19 CRYST1 78.321 78.321 164.001 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012768 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006098 0.00000