HEADER OXIDOREDUCTASE 26-FEB-22 7X2Y TITLE CRYSTAL STRUCTURE OF CIS-4,5-DIHYDRODIOL PHTHALATE DEHYDROGENASE IN TITLE 2 COMPLEX WITH NAD+ AND 3-HYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4,5-DIHYDROXYPHTHALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI KF-1; SOURCE 3 ORGANISM_TAXID: 399795; SOURCE 4 GENE: O987_21845; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDROGENASE, BACTERIAL PROTEIN, NAD COFACTOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,J.K.MAHTO,P.KUMAR REVDAT 2 29-NOV-23 7X2Y 1 REMARK REVDAT 1 14-SEP-22 7X2Y 0 JRNL AUTH J.K.MAHTO,M.SHARMA,N.NEETU,A.KAYASTHA,S.AGGARWAL,P.KUMAR JRNL TITL CONFORMATIONAL FLEXIBILITY ENABLES CATALYSIS OF PHTHALATE JRNL TITL 2 CIS-4,5-DIHYDRODIOL DEHYDROGENASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 727 09314 2022 JRNL REFN ESSN 1096-0384 JRNL PMID 35667443 JRNL DOI 10.1016/J.ABB.2022.109314 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1937 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : 3.72000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.646 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.844 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7674 ; 1.643 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 678 ; 7.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;28.851 ;20.440 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;18.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;20.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4364 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 391 B 4 391 11307 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7X2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 27.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC, AND REMARK 280 20 % POLYETHYLENE GLYCOL 3350, 100 MM TRIS BUFFER PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.78950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.15750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.78950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.15750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 169 REMARK 465 ARG A 170 REMARK 465 THR A 171 REMARK 465 GLU A 172 REMARK 465 GLU A 173 REMARK 465 PRO A 257 REMARK 465 GLU A 258 REMARK 465 ALA A 259 REMARK 465 TYR A 260 REMARK 465 GLY A 261 REMARK 465 ALA A 262 REMARK 465 ALA A 263 REMARK 465 ARG A 264 REMARK 465 ARG A 265 REMARK 465 LYS A 266 REMARK 465 LEU A 267 REMARK 465 ALA A 268 REMARK 465 THR A 269 REMARK 465 VAL A 270 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 ALA A 273 REMARK 465 GLN A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 ASN A 278 REMARK 465 LEU A 279 REMARK 465 LYS A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 THR A 284 REMARK 465 TYR A 285 REMARK 465 GLY A 286 REMARK 465 GLY A 287 REMARK 465 PRO A 288 REMARK 465 GLY A 289 REMARK 465 TYR A 290 REMARK 465 VAL A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 THR A 295 REMARK 465 ASP A 296 REMARK 465 ALA A 297 REMARK 465 ARG A 392 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 169 REMARK 465 ARG B 170 REMARK 465 THR B 171 REMARK 465 GLU B 172 REMARK 465 PRO B 257 REMARK 465 GLU B 258 REMARK 465 ALA B 259 REMARK 465 TYR B 260 REMARK 465 GLY B 261 REMARK 465 ALA B 262 REMARK 465 ALA B 263 REMARK 465 ARG B 264 REMARK 465 ARG B 265 REMARK 465 LYS B 266 REMARK 465 LEU B 267 REMARK 465 ALA B 268 REMARK 465 THR B 269 REMARK 465 VAL B 270 REMARK 465 GLY B 271 REMARK 465 SER B 272 REMARK 465 ALA B 273 REMARK 465 GLN B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 ALA B 277 REMARK 465 ASN B 278 REMARK 465 LEU B 279 REMARK 465 LYS B 280 REMARK 465 ALA B 281 REMARK 465 ALA B 282 REMARK 465 ALA B 283 REMARK 465 THR B 284 REMARK 465 TYR B 285 REMARK 465 GLY B 286 REMARK 465 GLY B 287 REMARK 465 PRO B 288 REMARK 465 GLY B 289 REMARK 465 TYR B 290 REMARK 465 VAL B 291 REMARK 465 ALA B 292 REMARK 465 ALA B 293 REMARK 465 ALA B 294 REMARK 465 THR B 295 REMARK 465 ASP B 296 REMARK 465 ALA B 297 REMARK 465 GLN B 298 REMARK 465 ARG B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 97 CD GLU A 97 OE2 0.075 REMARK 500 GLU B 97 CD GLU B 97 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 124 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 164 N - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 ARG B 40 CB - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG B 40 CG - CD - NE ANGL. DEV. = -15.4 DEGREES REMARK 500 GLY B 124 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 52.29 -94.82 REMARK 500 PRO A 212 63.49 -69.49 REMARK 500 HIS A 238 -86.14 -103.13 REMARK 500 PHE A 305 49.60 -141.24 REMARK 500 LEU B 14 53.86 -96.98 REMARK 500 PRO B 212 63.73 -68.44 REMARK 500 HIS B 238 -84.28 -103.02 REMARK 500 PHE B 305 47.81 -140.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 164 ARG B 165 -148.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 7X2Y A 1 392 PDB 7X2Y 7X2Y 1 392 DBREF 7X2Y B 1 392 PDB 7X2Y 7X2Y 1 392 SEQRES 1 A 392 MET ASN ALA GLY HIS GLN LEU ARG LEU GLY VAL ALA GLY SEQRES 2 A 392 LEU GLY ARG ALA PHE THR LEU MET LEU PRO THR LEU GLN SEQRES 3 A 392 GLN ASP PRO ARG ILE LYS LEU VAL ALA ALA CYS ASP PRO SEQRES 4 A 392 ARG GLY SER ALA ARG ALA GLN PHE ALA SER ASP PHE ARG SEQRES 5 A 392 ALA PRO VAL TYR PRO ASP ILE GLU GLY LEU ALA SER ASN SEQRES 6 A 392 PRO ASP VAL GLU ALA ILE TYR ILE ALA SER PRO HIS GLN SEQRES 7 A 392 PHE HIS ALA GLN GLN ALA ARG ILE ALA ALA ARG HIS GLY SEQRES 8 A 392 LYS HIS VAL LEU VAL GLU LYS PRO MET ALA LEU SER LEU SEQRES 9 A 392 GLY ASP CYS ASP GLU MET ILE GLN HIS CYS ARG ASP ALA SEQRES 10 A 392 GLY VAL HIS LEU ILE VAL GLY HIS CYS HIS SER PHE ASP SEQRES 11 A 392 THR PRO TYR LEU SER ALA ARG GLU ILE VAL GLN SER GLY SEQRES 12 A 392 GLU LEU GLY PRO VAL ARG MET VAL HIS ALA LEU ASN TYR SEQRES 13 A 392 THR ASP PHE LEU TYR ARG PRO ARG ARG PRO GLU GLU LEU SEQRES 14 A 392 ARG THR GLU GLU GLY GLY GLY VAL VAL PHE SER GLN ALA SEQRES 15 A 392 ALA HIS GLN VAL ASP ILE VAL ARG LEU LEU VAL GLY THR SEQRES 16 A 392 ARG VAL ARG ARG VAL ARG ALA ILE THR GLY ASP TRP ASP SEQRES 17 A 392 PRO MET ARG PRO THR GLN GLY ALA TYR SER ALA LEU LEU SEQRES 18 A 392 TRP PHE GLU GLY GLY ALA PHE ALA SER ILE SER TYR ASN SEQRES 19 A 392 GLY TYR GLY HIS PHE ASP SER ASP GLU TRP CYS ASP TRP SEQRES 20 A 392 ILE GLY GLU MET GLY GLY ASP LYS SER PRO GLU ALA TYR SEQRES 21 A 392 GLY ALA ALA ARG ARG LYS LEU ALA THR VAL GLY SER ALA SEQRES 22 A 392 GLN GLU GLU ALA ASN LEU LYS ALA ALA ALA THR TYR GLY SEQRES 23 A 392 GLY PRO GLY TYR VAL ALA ALA ALA THR ASP ALA GLN PRO SEQRES 24 A 392 ILE TRP HIS GLN HIS PHE GLY PRO ILE VAL VAL SER CYS SEQRES 25 A 392 GLU ARG GLY ASP ILE ARG PRO LEU PRO ASP SER VAL CYS SEQRES 26 A 392 VAL TYR ALA ASP LEU ALA LYS GLU ARG ARG SER LEU GLN SEQRES 27 A 392 ARG PRO VAL VAL PRO ARG PHE GLU VAL ILE ASP GLU LEU SEQRES 28 A 392 TYR HIS ALA VAL VAL ASN GLU ILE LYS PRO LEU HIS ASP SEQRES 29 A 392 GLY VAL TRP ALA ARG ALA THR LEU GLU VAL CYS LEU ALA SEQRES 30 A 392 LEU LEU ASP SER ALA GLY SER GLY LYS ASP VAL GLU LEU SEQRES 31 A 392 PRO ARG SEQRES 1 B 392 MET ASN ALA GLY HIS GLN LEU ARG LEU GLY VAL ALA GLY SEQRES 2 B 392 LEU GLY ARG ALA PHE THR LEU MET LEU PRO THR LEU GLN SEQRES 3 B 392 GLN ASP PRO ARG ILE LYS LEU VAL ALA ALA CYS ASP PRO SEQRES 4 B 392 ARG GLY SER ALA ARG ALA GLN PHE ALA SER ASP PHE ARG SEQRES 5 B 392 ALA PRO VAL TYR PRO ASP ILE GLU GLY LEU ALA SER ASN SEQRES 6 B 392 PRO ASP VAL GLU ALA ILE TYR ILE ALA SER PRO HIS GLN SEQRES 7 B 392 PHE HIS ALA GLN GLN ALA ARG ILE ALA ALA ARG HIS GLY SEQRES 8 B 392 LYS HIS VAL LEU VAL GLU LYS PRO MET ALA LEU SER LEU SEQRES 9 B 392 GLY ASP CYS ASP GLU MET ILE GLN HIS CYS ARG ASP ALA SEQRES 10 B 392 GLY VAL HIS LEU ILE VAL GLY HIS CYS HIS SER PHE ASP SEQRES 11 B 392 THR PRO TYR LEU SER ALA ARG GLU ILE VAL GLN SER GLY SEQRES 12 B 392 GLU LEU GLY PRO VAL ARG MET VAL HIS ALA LEU ASN TYR SEQRES 13 B 392 THR ASP PHE LEU TYR ARG PRO ARG ARG PRO GLU GLU LEU SEQRES 14 B 392 ARG THR GLU GLU GLY GLY GLY VAL VAL PHE SER GLN ALA SEQRES 15 B 392 ALA HIS GLN VAL ASP ILE VAL ARG LEU LEU VAL GLY THR SEQRES 16 B 392 ARG VAL ARG ARG VAL ARG ALA ILE THR GLY ASP TRP ASP SEQRES 17 B 392 PRO MET ARG PRO THR GLN GLY ALA TYR SER ALA LEU LEU SEQRES 18 B 392 TRP PHE GLU GLY GLY ALA PHE ALA SER ILE SER TYR ASN SEQRES 19 B 392 GLY TYR GLY HIS PHE ASP SER ASP GLU TRP CYS ASP TRP SEQRES 20 B 392 ILE GLY GLU MET GLY GLY ASP LYS SER PRO GLU ALA TYR SEQRES 21 B 392 GLY ALA ALA ARG ARG LYS LEU ALA THR VAL GLY SER ALA SEQRES 22 B 392 GLN GLU GLU ALA ASN LEU LYS ALA ALA ALA THR TYR GLY SEQRES 23 B 392 GLY PRO GLY TYR VAL ALA ALA ALA THR ASP ALA GLN PRO SEQRES 24 B 392 ILE TRP HIS GLN HIS PHE GLY PRO ILE VAL VAL SER CYS SEQRES 25 B 392 GLU ARG GLY ASP ILE ARG PRO LEU PRO ASP SER VAL CYS SEQRES 26 B 392 VAL TYR ALA ASP LEU ALA LYS GLU ARG ARG SER LEU GLN SEQRES 27 B 392 ARG PRO VAL VAL PRO ARG PHE GLU VAL ILE ASP GLU LEU SEQRES 28 B 392 TYR HIS ALA VAL VAL ASN GLU ILE LYS PRO LEU HIS ASP SEQRES 29 B 392 GLY VAL TRP ALA ARG ALA THR LEU GLU VAL CYS LEU ALA SEQRES 30 B 392 LEU LEU ASP SER ALA GLY SER GLY LYS ASP VAL GLU LEU SEQRES 31 B 392 PRO ARG HET PEG A 601 7 HET GOL A 602 6 HET PEG A 603 7 HET PO4 A 604 5 HET GOL A 605 6 HET 3HB A 606 10 HET NAD A 607 44 HET GOL A 608 6 HET GOL B 601 6 HET PEG B 602 7 HET PO4 B 603 5 HET PEG B 604 7 HET GOL B 605 6 HET PEG B 606 7 HET PEG B 607 7 HET 3HB B 608 10 HET NAD B 609 44 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM 3HB 3-HYDROXYBENZOIC ACID HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PEG 6(C4 H10 O3) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 6 PO4 2(O4 P 3-) FORMUL 8 3HB 2(C7 H6 O3) FORMUL 9 NAD 2(C21 H27 N7 O14 P2) FORMUL 20 HOH *334(H2 O) HELIX 1 AA1 GLY A 15 ASP A 28 1 14 HELIX 2 AA2 ARG A 40 ARG A 52 1 13 HELIX 3 AA3 ASP A 58 ASN A 65 1 8 HELIX 4 AA4 PRO A 76 GLN A 78 5 3 HELIX 5 AA5 PHE A 79 HIS A 90 1 12 HELIX 6 AA6 SER A 103 GLY A 118 1 16 HELIX 7 AA7 CYS A 126 PHE A 129 5 4 HELIX 8 AA8 ASP A 130 GLY A 143 1 14 HELIX 9 AA9 GLY A 175 GLY A 194 1 20 HELIX 10 AB1 ASP A 240 CYS A 245 5 6 HELIX 11 AB2 ARG A 344 ASN A 357 1 14 HELIX 12 AB3 ASP A 364 SER A 384 1 21 HELIX 13 AB4 GLY B 15 ASP B 28 1 14 HELIX 14 AB5 ARG B 40 ARG B 52 1 13 HELIX 15 AB6 ASP B 58 ASN B 65 1 8 HELIX 16 AB7 PRO B 76 GLN B 78 5 3 HELIX 17 AB8 PHE B 79 HIS B 90 1 12 HELIX 18 AB9 SER B 103 GLY B 118 1 16 HELIX 19 AC1 CYS B 126 PHE B 129 5 4 HELIX 20 AC2 ASP B 130 GLY B 143 1 14 HELIX 21 AC3 ARG B 164 GLU B 168 5 5 HELIX 22 AC4 GLY B 175 GLY B 194 1 20 HELIX 23 AC5 ASP B 240 CYS B 245 5 6 HELIX 24 AC6 ARG B 344 GLU B 358 1 15 HELIX 25 AC7 ASP B 364 GLY B 385 1 22 SHEET 1 AA1 6 VAL A 55 TYR A 56 0 SHEET 2 AA1 6 ILE A 31 CYS A 37 1 N ALA A 36 O TYR A 56 SHEET 3 AA1 6 LEU A 7 ALA A 12 1 N LEU A 9 O LYS A 32 SHEET 4 AA1 6 ALA A 70 ILE A 73 1 O TYR A 72 N GLY A 10 SHEET 5 AA1 6 HIS A 93 VAL A 96 1 O HIS A 93 N ILE A 71 SHEET 6 AA1 6 LEU A 121 VAL A 123 1 O ILE A 122 N VAL A 94 SHEET 1 AA2 9 LYS A 332 SER A 336 0 SHEET 2 AA2 9 SER A 323 ALA A 328 -1 N VAL A 326 O GLU A 333 SHEET 3 AA2 9 GLY A 315 LEU A 320 -1 N LEU A 320 O SER A 323 SHEET 4 AA2 9 ILE A 308 CYS A 312 -1 N CYS A 312 O GLY A 315 SHEET 5 AA2 9 VAL A 148 TYR A 156 -1 N MET A 150 O SER A 311 SHEET 6 AA2 9 PHE A 228 ASN A 234 1 O ASN A 234 N ASN A 155 SHEET 7 AA2 9 ALA A 216 PHE A 223 -1 N LEU A 221 O ALA A 229 SHEET 8 AA2 9 VAL A 197 GLY A 205 -1 N ARG A 201 O LEU A 220 SHEET 9 AA2 9 VAL A 388 GLU A 389 -1 O VAL A 388 N VAL A 200 SHEET 1 AA3 6 VAL B 55 TYR B 56 0 SHEET 2 AA3 6 ILE B 31 CYS B 37 1 N ALA B 36 O TYR B 56 SHEET 3 AA3 6 LEU B 7 ALA B 12 1 N LEU B 9 O LYS B 32 SHEET 4 AA3 6 ALA B 70 ILE B 73 1 O ALA B 70 N GLY B 10 SHEET 5 AA3 6 HIS B 93 VAL B 96 1 O HIS B 93 N ILE B 71 SHEET 6 AA3 6 LEU B 121 VAL B 123 1 O ILE B 122 N VAL B 94 SHEET 1 AA4 9 LYS B 332 SER B 336 0 SHEET 2 AA4 9 SER B 323 ALA B 328 -1 N VAL B 326 O GLU B 333 SHEET 3 AA4 9 GLY B 315 LEU B 320 -1 N LEU B 320 O SER B 323 SHEET 4 AA4 9 ILE B 308 CYS B 312 -1 N CYS B 312 O GLY B 315 SHEET 5 AA4 9 VAL B 148 TYR B 156 -1 N MET B 150 O SER B 311 SHEET 6 AA4 9 PHE B 228 ASN B 234 1 O ASN B 234 N ASN B 155 SHEET 7 AA4 9 ALA B 216 PHE B 223 -1 N LEU B 221 O ALA B 229 SHEET 8 AA4 9 VAL B 197 GLY B 205 -1 N ARG B 198 O TRP B 222 SHEET 9 AA4 9 VAL B 388 GLU B 389 -1 O VAL B 388 N VAL B 200 CISPEP 1 LYS A 98 PRO A 99 0 -7.32 CISPEP 2 LYS B 98 PRO B 99 0 -6.82 CRYST1 53.579 88.315 162.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006136 0.00000