HEADER VIRAL PROTEIN 27-FEB-22 7X31 TITLE SOLUTION STRUCTURE OF AN ANTI-CRISPR PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CRISPR PROTEIN (ACRIIC1); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-CRISPR, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ZHAO,F.YANG REVDAT 3 15-MAY-24 7X31 1 REMARK REVDAT 2 25-JAN-23 7X31 1 JRNL REVDAT 1 26-OCT-22 7X31 0 JRNL AUTH Y.ZHAO,J.HU,S.S.YANG,J.ZHONG,J.LIU,S.WANG,Y.JIAO,F.JIANG, JRNL AUTH 2 R.ZHAI,B.REN,H.CONG,Y.ZHU,F.HAN,J.ZHANG,Y.XU,Z.HUANG, JRNL AUTH 3 S.ZHANG,F.YANG JRNL TITL A REDOX SWITCH REGULATES THE ASSEMBLY AND ANTI-CRISPR JRNL TITL 2 ACTIVITY OF ACRIIC1. JRNL REF NAT COMMUN V. 13 7071 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36400778 JRNL DOI 10.1038/S41467-022-34551-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7X31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1300027938. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] PROTEIN, 20 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, 90% REMARK 210 H2O/10% D2O; 1 MM [U-13C; U-15N] REMARK 210 PROTEIN, 20 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 1 MM [U-13C; U-15N] PROTEIN, 20 REMARK 210 MM TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY-HSQC; 3D 1H-13C REMARK 210 NOESY-HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 6 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 53 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 9 ARG A 59 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 13 ARG A 36 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A 53 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 14 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 17 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 18 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 18 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 45 36.42 -145.49 REMARK 500 1 ALA A 71 -153.49 -157.93 REMARK 500 1 SER A 79 128.30 -173.71 REMARK 500 2 ASP A 15 36.55 -141.55 REMARK 500 2 ALA A 71 -158.22 -154.73 REMARK 500 2 SER A 79 136.77 -173.89 REMARK 500 3 ALA A 2 14.41 -145.94 REMARK 500 3 ALA A 71 -155.43 -152.78 REMARK 500 4 ASP A 15 34.99 -141.93 REMARK 500 4 ASP A 43 30.17 -148.59 REMARK 500 4 ALA A 71 -155.39 -156.17 REMARK 500 4 SER A 79 132.15 -172.94 REMARK 500 5 ASP A 15 39.06 -142.91 REMARK 500 5 ASP A 46 70.59 54.01 REMARK 500 5 ALA A 71 -157.09 -152.56 REMARK 500 5 SER A 79 133.97 -173.50 REMARK 500 6 ASP A 43 30.81 -143.76 REMARK 500 6 ALA A 71 -154.34 -153.80 REMARK 500 6 SER A 79 138.46 -172.52 REMARK 500 7 ASP A 15 37.10 -142.86 REMARK 500 7 ASP A 43 -75.02 -107.36 REMARK 500 7 ASP A 45 35.66 -152.75 REMARK 500 7 ALA A 71 -157.35 -154.63 REMARK 500 7 SER A 79 135.82 -174.57 REMARK 500 8 ASP A 15 44.54 -145.54 REMARK 500 8 ASP A 43 32.43 -145.71 REMARK 500 8 ALA A 71 -155.41 -154.71 REMARK 500 8 SER A 79 86.84 -166.75 REMARK 500 8 CYS A 80 75.69 55.93 REMARK 500 9 ALA A 2 30.70 -78.57 REMARK 500 9 SER A 79 128.52 -173.90 REMARK 500 10 ALA A 2 13.55 59.80 REMARK 500 10 ARG A 53 -62.48 -92.40 REMARK 500 10 ALA A 71 -154.42 -153.05 REMARK 500 11 ALA A 2 18.75 -152.16 REMARK 500 11 ALA A 71 -156.10 -155.82 REMARK 500 11 SER A 79 132.96 -172.03 REMARK 500 12 ASN A 3 150.78 -42.15 REMARK 500 12 ASP A 43 33.16 -144.93 REMARK 500 12 ALA A 71 -154.03 -152.13 REMARK 500 12 SER A 79 136.44 -174.80 REMARK 500 13 ALA A 71 -155.57 -153.29 REMARK 500 13 SER A 79 124.70 -170.23 REMARK 500 14 ALA A 2 -117.07 -76.17 REMARK 500 14 ASP A 15 41.59 -144.56 REMARK 500 14 ALA A 71 -155.52 -151.67 REMARK 500 14 SER A 79 105.33 -165.67 REMARK 500 14 CYS A 80 72.44 49.49 REMARK 500 15 ALA A 2 84.14 -157.40 REMARK 500 15 ASP A 15 39.15 -142.74 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 59 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36471 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF AN ANTI-CRISPR PROTEIN DBREF1 7X31 A 1 86 UNP A0A2D0TCG3_NEIME DBREF2 7X31 A A0A2D0TCG3 1 86 SEQRES 1 A 86 MET ALA ASN LYS THR TYR LYS ILE GLY LYS ASN ALA GLY SEQRES 2 A 86 TYR ASP GLY CYS GLY LEU CYS LEU ALA ALA ILE SER GLU SEQRES 3 A 86 ASN GLU ALA ILE LYS VAL LYS TYR LEU ARG ASP ILE CYS SEQRES 4 A 86 PRO ASP TYR ASP GLY ASP ASP LYS ALA GLU ASP TRP LEU SEQRES 5 A 86 ARG TRP GLY THR ASP SER ARG VAL LYS ALA ALA ALA LEU SEQRES 6 A 86 GLU MET GLU GLN TYR ALA TYR THR SER VAL GLY MET ALA SEQRES 7 A 86 SER CYS TRP GLU PHE VAL GLU LEU HELIX 1 AA1 LEU A 35 CYS A 39 1 5 HELIX 2 AA2 ASP A 50 GLY A 55 1 6 HELIX 3 AA3 ASP A 57 GLN A 69 1 13 SHEET 1 AA1 6 LYS A 4 ILE A 8 0 SHEET 2 AA1 6 GLU A 28 TYR A 34 1 O ALA A 29 N LYS A 7 SHEET 3 AA1 6 GLY A 18 SER A 25 -1 N SER A 25 O GLU A 28 SHEET 4 AA1 6 TYR A 72 SER A 79 -1 O TYR A 72 N ILE A 24 SHEET 5 AA1 6 GLU A 82 GLU A 85 -1 O VAL A 84 N MET A 77 SHEET 6 AA1 6 LYS A 4 ILE A 8 -1 N LYS A 4 O GLU A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1