HEADER TRANSLATION/RNA 27-FEB-22 7X34 TITLE CRYO-EM STRUCTURE OF RNC-RAC COMPLEX IN PRESENCE OF SSB FROM S. TITLE 2 CEREVISIAE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZUOTIN; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: DNAJ-RELATED PROTEIN ZUO1,J PROTEIN ZUO1,HEAT SHOCK PROTEIN COMPND 5 40 HOMOLOG ZUO1,RIBOSOME-ASSOCIATED COMPLEX SUBUNIT ZUO1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (130-MER); COMPND 9 CHAIN: 3; COMPND 10 SYNONYM: H44 OF 18S RRNA; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: ZUO1, YGR285C; SOURCE 7 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS RAC, CO-TRANSLATIONAL FOLDING, TRANSLATION, TRANSLATION-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.CHEN,N.GAO REVDAT 1 29-JUN-22 7X34 0 JRNL AUTH Y.CHEN,B.TSAI,N.LI,N.GAO JRNL TITL STRUCTURAL REMODELING OF RIBOSOME ASSOCIATED HSP40-HSP70 JRNL TITL 2 CHAPERONES DURING CO-TRANSLATIONAL FOLDING. JRNL REF NAT COMMUN V. 13 3410 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35701497 JRNL DOI 10.1038/S41467-022-31127-4 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 65816 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7X34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300027958. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RNC-RAC COMPLEX IN PRESENCE OF REMARK 245 SSB FROM S. CEREVISIAE 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3500.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, 3 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C 3 1637 REMARK 465 G 3 1638 REMARK 465 C 3 1639 REMARK 465 C 3 1640 REMARK 465 C 3 1641 REMARK 465 G 3 1642 REMARK 465 U 3 1643 REMARK 465 C 3 1644 REMARK 465 G 3 1645 REMARK 465 C 3 1646 REMARK 465 U 3 1647 REMARK 465 A 3 1648 REMARK 465 G 3 1649 REMARK 465 U 3 1650 REMARK 465 A 3 1651 REMARK 465 C 3 1652 REMARK 465 C 3 1653 REMARK 465 G 3 1654 REMARK 465 A 3 1655 REMARK 465 U 3 1656 REMARK 465 U 3 1657 REMARK 465 G 3 1658 REMARK 465 A 3 1659 REMARK 465 A 3 1660 REMARK 465 U 3 1661 REMARK 465 G 3 1662 REMARK 465 G 3 1663 REMARK 465 C 3 1664 REMARK 465 U 3 1665 REMARK 465 U 3 1666 REMARK 465 A 3 1667 REMARK 465 G 3 1668 REMARK 465 U 3 1669 REMARK 465 G 3 1670 REMARK 465 A 3 1671 REMARK 465 G 3 1672 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 425 CG PRO C 425 CD -0.459 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 425 CA - N - CD ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO C 425 CA - CB - CG ANGL. DEV. = -20.0 DEGREES REMARK 500 PRO C 425 N - CD - CG ANGL. DEV. = -25.9 DEGREES REMARK 500 U 31676 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 G 31695 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 U 31708 N1 - C2 - O2 ANGL. DEV. = 5.5 DEGREES REMARK 500 U 31708 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 U 31708 C2 - N1 - C1' ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 366 176.33 66.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32978 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF RNC-RAC COMPLEX IN PRESENCE OF SSB FROM S. REMARK 900 CEREVISIAE 2 DBREF 7X34 C 334 433 UNP P32527 ZUO1_YEAST 334 433 DBREF1 7X34 3 1637 1766 GB CP011821.1 DBREF2 7X34 3 834774822 456070 455941 SEQRES 1 C 100 ALA SER ALA LYS ALA ASP LYS LYS LYS ALA LYS GLU ALA SEQRES 2 C 100 ALA LYS ALA ALA LYS LYS LYS ASN LYS ARG ALA ILE ARG SEQRES 3 C 100 ASN SER ALA LYS GLU ALA ASP TYR PHE GLY ASP ALA ASP SEQRES 4 C 100 LYS ALA THR THR ILE ASP GLU GLN VAL GLY LEU ILE VAL SEQRES 5 C 100 ASP SER LEU ASN ASP GLU GLU LEU VAL SER THR ALA ASP SEQRES 6 C 100 LYS ILE LYS ALA ASN ALA ALA GLY ALA LYS GLU VAL LEU SEQRES 7 C 100 LYS GLU SER ALA LYS THR ILE VAL ASP SER GLY LYS LEU SEQRES 8 C 100 PRO SER SER LEU LEU SER TYR PHE VAL SEQRES 1 3 130 C G C C C G U C G C U A G SEQRES 2 3 130 U A C C G A U U G A A U G SEQRES 3 3 130 G C U U A G U G A G G C C SEQRES 4 3 130 U C A G G A U C U G C U U SEQRES 5 3 130 A G A G A A G G G G G C A SEQRES 6 3 130 A C U C C A U C U C A G A SEQRES 7 3 130 G C G G A G A A U U U G G SEQRES 8 3 130 A C A A A C U U G G U C A SEQRES 9 3 130 U U U A G A G G A A C U A SEQRES 10 3 130 A A A G U C G U A A C A A HELIX 1 AA1 ALA C 334 ALA C 365 1 32 HELIX 2 AA2 LYS C 373 SER C 387 1 15 HELIX 3 AA3 ASN C 389 ASN C 403 1 15 HELIX 4 AA4 ALA C 407 SER C 421 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000