HEADER TRANSFERASE 10-MAR-22 7X7S TITLE SOLUTION STRUCTURE OF HUMAN ADENYLATE KINASE 1 (HAK1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE ISOENZYME 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AK 1,ATP-AMP TRANSPHOSPHORYLASE 1,ATP:AMP COMPND 5 PHOSPHOTRANSFERASE,ADENYLATE MONOPHOSPHATE KINASE,MYOKINASE; COMPND 6 EC: 2.7.4.3,2.7.4.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENYLATE KINASE, ADP, ATP, LID DOMAIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ZHANG REVDAT 4 15-MAY-24 7X7S 1 REMARK REVDAT 3 14-JUN-23 7X7S 1 REMARK REVDAT 2 23-NOV-22 7X7S 1 JRNL REVDAT 1 11-MAY-22 7X7S 0 JRNL AUTH C.GUO,H.ZHANG,W.LIN,H.CHEN,T.CHANG,Z.WU,J.YU,D.LIN JRNL TITL ADP-INDUCED CONFORMATIONAL TRANSITION OF HUMAN ADENYLATE JRNL TITL 2 KINASE 1 IS TRIGGERED BY SUPPRESSING INTERNAL MOTION OF JRNL TITL 3 ALPHA 3 ALPHA 4 AND ALPHA 7 ALPHA 8 FRAGMENTS ON THE PS-NS JRNL TITL 4 TIMESCALE. JRNL REF BIOMOLECULES V. 12 2022 JRNL REFN ESSN 2218-273X JRNL PMID 35625598 JRNL DOI 10.3390/BIOM12050671 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA2ALPHA REMARK 3 AUTHORS : RIEPING W., LINGE, J. P., ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7X7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300028258. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 15N] HAK1, 10 MM REMARK 210 NA2HPO4, 50 MM NACL, 100 MM REMARK 210 NA2SO4, 90% H2O/10% D2O; 1.0 MM REMARK 210 [U-100% 13C; U-100% 15N] HAK1, REMARK 210 10 MM NA2HPO4, 50 MM NACL, 100 REMARK 210 MM NA2SO4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D 1H-15N TOCSY; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D C(CO)NH; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 32 -17.89 -49.86 REMARK 500 1 PRO A 101 175.97 -49.57 REMARK 500 1 SER A 141 -77.03 -147.02 REMARK 500 1 ARG A 143 -176.08 -60.60 REMARK 500 1 GLU A 181 9.25 -65.18 REMARK 500 1 LEU A 198 -18.83 -43.92 REMARK 500 2 PRO A 101 176.27 -46.00 REMARK 500 2 ARG A 113 -55.13 -121.15 REMARK 500 2 LEU A 119 141.74 -170.96 REMARK 500 2 ARG A 143 175.46 -52.77 REMARK 500 2 VAL A 144 -70.90 -48.32 REMARK 500 2 GLU A 181 8.16 -66.66 REMARK 500 3 VAL A 86 -19.53 -47.23 REMARK 500 3 VAL A 89 -30.90 -39.86 REMARK 500 3 PRO A 101 176.70 -47.62 REMARK 500 3 LEU A 119 140.60 -170.53 REMARK 500 3 SER A 141 -79.28 -155.60 REMARK 500 3 GLU A 181 6.52 -62.43 REMARK 500 4 SER A 56 -169.61 -74.68 REMARK 500 4 PRO A 101 176.70 -48.56 REMARK 500 4 LEU A 119 139.68 -171.28 REMARK 500 4 SER A 141 -63.75 -150.67 REMARK 500 4 ARG A 143 -177.90 -60.92 REMARK 500 4 GLU A 181 2.34 -61.91 REMARK 500 4 LEU A 198 -19.81 -48.31 REMARK 500 5 VAL A 89 -30.20 -39.10 REMARK 500 5 PRO A 101 176.53 -48.44 REMARK 500 5 LEU A 119 139.53 -170.17 REMARK 500 5 SER A 141 -145.40 -148.13 REMARK 500 5 ARG A 143 175.63 -54.82 REMARK 500 5 VAL A 144 -70.02 -50.68 REMARK 500 5 SER A 183 159.69 -49.58 REMARK 500 6 VAL A 89 -30.27 -39.65 REMARK 500 6 PRO A 101 176.70 -48.70 REMARK 500 6 LEU A 119 140.83 -170.76 REMARK 500 6 SER A 141 -150.46 -148.47 REMARK 500 6 ARG A 143 178.29 -54.43 REMARK 500 6 GLU A 181 8.28 -66.56 REMARK 500 6 LEU A 198 -11.69 -48.92 REMARK 500 7 SER A 56 -175.61 -66.21 REMARK 500 7 VAL A 89 -31.34 -38.89 REMARK 500 7 PRO A 101 177.63 -48.02 REMARK 500 7 ARG A 113 -51.05 -121.50 REMARK 500 7 LEU A 119 139.19 -170.53 REMARK 500 7 SER A 141 -79.41 -156.14 REMARK 500 7 ARG A 143 -174.50 -65.24 REMARK 500 8 VAL A 89 -31.74 -39.78 REMARK 500 8 PRO A 101 177.19 -49.62 REMARK 500 8 LEU A 119 138.80 -171.01 REMARK 500 8 SER A 141 -77.24 -139.28 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18133 RELATED DB: BMRB DBREF 7X7S A 6 199 UNP P00568 KAD1_HUMAN 1 194 SEQADV 7X7S GLY A 1 UNP P00568 EXPRESSION TAG SEQADV 7X7S PRO A 2 UNP P00568 EXPRESSION TAG SEQADV 7X7S LEU A 3 UNP P00568 EXPRESSION TAG SEQADV 7X7S GLY A 4 UNP P00568 EXPRESSION TAG SEQADV 7X7S SER A 5 UNP P00568 EXPRESSION TAG SEQRES 1 A 199 GLY PRO LEU GLY SER MET GLU GLU LYS LEU LYS LYS THR SEQRES 2 A 199 LYS ILE ILE PHE VAL VAL GLY GLY PRO GLY SER GLY LYS SEQRES 3 A 199 GLY THR GLN CYS GLU LYS ILE VAL GLN LYS TYR GLY TYR SEQRES 4 A 199 THR HIS LEU SER THR GLY ASP LEU LEU ARG SER GLU VAL SEQRES 5 A 199 SER SER GLY SER ALA ARG GLY LYS LYS LEU SER GLU ILE SEQRES 6 A 199 MET GLU LYS GLY GLN LEU VAL PRO LEU GLU THR VAL LEU SEQRES 7 A 199 ASP MET LEU ARG ASP ALA MET VAL ALA LYS VAL ASN THR SEQRES 8 A 199 SER LYS GLY PHE LEU ILE ASP GLY TYR PRO ARG GLU VAL SEQRES 9 A 199 GLN GLN GLY GLU GLU PHE GLU ARG ARG ILE GLY GLN PRO SEQRES 10 A 199 THR LEU LEU LEU TYR VAL ASP ALA GLY PRO GLU THR MET SEQRES 11 A 199 THR GLN ARG LEU LEU LYS ARG GLY GLU THR SER GLY ARG SEQRES 12 A 199 VAL ASP ASP ASN GLU GLU THR ILE LYS LYS ARG LEU GLU SEQRES 13 A 199 THR TYR TYR LYS ALA THR GLU PRO VAL ILE ALA PHE TYR SEQRES 14 A 199 GLU LYS ARG GLY ILE VAL ARG LYS VAL ASN ALA GLU GLY SEQRES 15 A 199 SER VAL ASP SER VAL PHE SER GLN VAL CYS THR HIS LEU SEQRES 16 A 199 ASP ALA LEU LYS HELIX 1 AA1 MET A 6 LYS A 11 1 6 HELIX 2 AA2 GLY A 25 TYR A 37 1 13 HELIX 3 AA3 THR A 44 SER A 53 1 10 HELIX 4 AA4 SER A 56 MET A 66 1 11 HELIX 5 AA5 PRO A 73 VAL A 86 1 14 HELIX 6 AA6 GLU A 103 GLU A 109 1 7 HELIX 7 AA7 GLU A 109 ILE A 114 1 6 HELIX 8 AA8 GLU A 128 LEU A 134 1 7 HELIX 9 AA9 LEU A 135 THR A 140 5 6 HELIX 10 AB1 ASN A 147 ARG A 172 1 26 HELIX 11 AB2 SER A 183 LEU A 198 1 16 SHEET 1 AA1 5 THR A 40 SER A 43 0 SHEET 2 AA1 5 GLY A 94 TYR A 100 1 O LEU A 96 N LEU A 42 SHEET 3 AA1 5 LYS A 14 GLY A 20 1 N ILE A 16 O ILE A 97 SHEET 4 AA1 5 LEU A 120 ASP A 124 1 O VAL A 123 N VAL A 19 SHEET 5 AA1 5 VAL A 175 ASN A 179 1 O VAL A 178 N ASP A 124 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1