HEADER CHAPERONE 11-MAR-22 7X89 TITLE TID1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNAJ PROTEIN TID-1,HTID-1,HEPATOCELLULAR CARCINOMA- COMPND 5 ASSOCIATED ANTIGEN 57,TUMOROUS IMAGINAL DISCS PROTEIN TID56 HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNAJA3, HCA57, TID1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT SHOCK PROTEIN, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.JANG,S.H.LEE,D.H.KANG,D.W.SIM,K.S.JO,H.RYU,E.H.KIM,K.S.RYU,J.H.LEE, AUTHOR 2 J.H.KIM,H.S.WON REVDAT 1 22-MAR-23 7X89 0 JRNL AUTH J.JANG,S.H.LEE,D.H.KANG,J.H.KIM,D.W.SIM,K.S.JO,H.S.WON, JRNL AUTH 2 K.S.RYU,E.H.KIM,H.RYU,J.H.LEE JRNL TITL STRUCTURAL STUDIES ON THE J-DOMAIN AND GF-MOTIF OF THE JRNL TITL 2 MITOCHONDRIAL HSP40, TID1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CHARMM REMARK 3 AUTHORS : B. R. BROOKS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1365 NOE DISTANCES WERE USED AND 62 REMARK 3 DIHEDRAL ANGLES WERE USED REMARK 4 REMARK 4 7X89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300027321. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-13C; U-15N] DNAJ REMARK 210 HOMOLOG SUBFAMILY A MEMBER 3, REMARK 210 MITOCHONDRIAL, 200 UM [U-15N] REMARK 210 DNAJ HOMOLOG SUBFAMILY A MEMBER REMARK 210 3, MITOCHONDRIAL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D CCH- REMARK 210 TOCSY; 3D HNCACB; 3D HNCACO; 3D REMARK 210 CBCA(CO)NH; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LYS A 25 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 1 TYR A 34 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 1 LYS A 48 N - CA - CB ANGL. DEV. = -14.6 DEGREES REMARK 500 1 LEU A 52 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 1 LYS A 66 N - CA - CB ANGL. DEV. = -16.1 DEGREES REMARK 500 2 LYS A 25 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 2 TYR A 34 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 2 LYS A 48 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 2 LEU A 52 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 2 LYS A 66 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 3 LYS A 25 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 3 TYR A 34 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 3 LYS A 48 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 3 LEU A 52 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 3 LYS A 66 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 4 LYS A 25 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 4 TYR A 34 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 4 LYS A 66 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 5 LYS A 25 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 5 TYR A 34 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 5 LYS A 48 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 5 LYS A 66 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 6 LYS A 25 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 6 TYR A 34 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 6 LYS A 48 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 6 LYS A 66 N - CA - CB ANGL. DEV. = -16.3 DEGREES REMARK 500 7 LYS A 25 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 7 TYR A 34 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 7 LYS A 48 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 7 LYS A 66 N - CA - CB ANGL. DEV. = -16.6 DEGREES REMARK 500 8 LYS A 25 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 8 TYR A 34 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 8 LYS A 48 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 8 LEU A 52 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 8 LYS A 66 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 8 TYR A 71 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 9 LYS A 25 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 9 TYR A 34 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 9 LYS A 48 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 9 LYS A 66 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 10 LYS A 25 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 10 TYR A 34 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 10 LYS A 48 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 10 LYS A 66 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 11 LYS A 25 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 11 TYR A 34 N - CA - CB ANGL. DEV. = -16.3 DEGREES REMARK 500 11 LYS A 48 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 11 LYS A 66 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 12 LYS A 25 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 12 TYR A 34 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 86 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 38 ASN A 39 1 -138.44 REMARK 500 THR A 38 ASN A 39 2 -135.02 REMARK 500 THR A 38 ASN A 39 3 -139.30 REMARK 500 THR A 38 ASN A 39 4 -133.04 REMARK 500 THR A 38 ASN A 39 5 -141.80 REMARK 500 THR A 38 ASN A 39 6 -131.37 REMARK 500 THR A 38 ASN A 39 7 -138.15 REMARK 500 THR A 38 ASN A 39 8 -135.82 REMARK 500 THR A 38 ASN A 39 9 -140.13 REMARK 500 THR A 38 ASN A 39 10 -134.43 REMARK 500 THR A 38 ASN A 39 11 -142.01 REMARK 500 THR A 38 ASN A 39 12 -133.60 REMARK 500 THR A 38 ASN A 39 13 -140.41 REMARK 500 THR A 38 ASN A 39 14 -135.03 REMARK 500 THR A 38 ASN A 39 15 -133.60 REMARK 500 THR A 38 ASN A 39 16 -142.58 REMARK 500 THR A 38 ASN A 39 17 -137.52 REMARK 500 ALA A 70 TYR A 71 17 -148.09 REMARK 500 THR A 38 ASN A 39 18 -142.28 REMARK 500 THR A 38 ASN A 39 19 -137.39 REMARK 500 THR A 38 ASN A 39 20 -136.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 28 0.08 SIDE CHAIN REMARK 500 2 TYR A 28 0.07 SIDE CHAIN REMARK 500 2 ARG A 65 0.09 SIDE CHAIN REMARK 500 7 TYR A 56 0.07 SIDE CHAIN REMARK 500 10 ARG A 65 0.10 SIDE CHAIN REMARK 500 11 TYR A 28 0.07 SIDE CHAIN REMARK 500 13 TYR A 56 0.09 SIDE CHAIN REMARK 500 14 TYR A 28 0.06 SIDE CHAIN REMARK 500 15 TYR A 28 0.07 SIDE CHAIN REMARK 500 20 TYR A 56 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36474 RELATED DB: BMRB REMARK 900 TID1 DBREF 7X89 A 3 73 UNP Q96EY1 DNJA3_HUMAN 89 159 SEQADV 7X89 HIS A 1 UNP Q96EY1 EXPRESSION TAG SEQADV 7X89 MET A 2 UNP Q96EY1 EXPRESSION TAG SEQRES 1 A 73 HIS MET LEU ALA LYS GLU ASP TYR TYR GLN ILE LEU GLY SEQRES 2 A 73 VAL PRO ARG ASN ALA SER GLN LYS GLU ILE LYS LYS ALA SEQRES 3 A 73 TYR TYR GLN LEU ALA LYS LYS TYR HIS PRO ASP THR ASN SEQRES 4 A 73 LYS ASP ASP PRO LYS ALA LYS GLU LYS PHE SER GLN LEU SEQRES 5 A 73 ALA GLU ALA TYR GLU VAL LEU SER ASP GLU VAL LYS ARG SEQRES 6 A 73 LYS GLN TYR ASP ALA TYR GLY SER HELIX 1 AA1 ASP A 7 GLY A 13 1 7 HELIX 2 AA2 SER A 19 HIS A 35 1 17 HELIX 3 AA3 ASP A 37 ASP A 41 5 5 HELIX 4 AA4 LYS A 44 SER A 60 1 17 HELIX 5 AA5 ASP A 61 GLY A 72 1 12 CISPEP 1 PRO A 36 ASP A 37 1 18.78 CISPEP 2 PRO A 36 ASP A 37 2 20.31 CISPEP 3 PRO A 36 ASP A 37 3 18.11 CISPEP 4 PRO A 36 ASP A 37 4 22.35 CISPEP 5 PRO A 36 ASP A 37 5 19.00 CISPEP 6 PRO A 36 ASP A 37 6 21.50 CISPEP 7 PRO A 36 ASP A 37 7 22.01 CISPEP 8 PRO A 36 ASP A 37 8 20.54 CISPEP 9 PRO A 36 ASP A 37 9 19.18 CISPEP 10 PRO A 36 ASP A 37 10 21.13 CISPEP 11 PRO A 36 ASP A 37 11 14.39 CISPEP 12 PRO A 36 ASP A 37 12 23.76 CISPEP 13 PRO A 36 ASP A 37 13 18.78 CISPEP 14 PRO A 36 ASP A 37 14 16.00 CISPEP 15 PRO A 36 ASP A 37 15 24.21 CISPEP 16 PRO A 36 ASP A 37 16 17.84 CISPEP 17 PRO A 36 ASP A 37 17 16.45 CISPEP 18 PRO A 36 ASP A 37 18 19.97 CISPEP 19 PRO A 36 ASP A 37 19 20.92 CISPEP 20 PRO A 36 ASP A 37 20 18.50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1