HEADER MEMBRANE PROTEIN 15-MAR-22 7X9G TITLE CRYSTAL STRUCTURE OF HUMAN EDA AND EDAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTODYSPLASIN-A, SECRETED FORM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER EDAR; COMPND 7 CHAIN: C; COMPND 8 SYNONYM: ANHIDROTIC ECTODYSPLASIN RECEPTOR 1,DOWNLESS HOMOLOG,EDA-A1 COMPND 9 RECEPTOR,ECTODERMAL DYSPLASIA RECEPTOR,ECTODYSPLASIN-A RECEPTOR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EDA, ED1, EDA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: EDAR, DL; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE KEYWDS LIGAND-RECEPTOR COMPLEX, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YU,F.WAN,C.HUANG,J.WU,M.LEI REVDAT 2 29-NOV-23 7X9G 1 REMARK REVDAT 1 22-FEB-23 7X9G 0 JRNL AUTH K.YU,C.HUANG,F.WAN,C.JIANG,J.CHEN,X.LI,F.WANG,J.WU,M.LEI, JRNL AUTH 2 Y.WU JRNL TITL STRUCTURAL INSIGHTS INTO PATHOGENIC MECHANISM OF JRNL TITL 2 HYPOHIDROTIC ECTODERMAL DYSPLASIA CAUSED BY ECTODYSPLASIN A JRNL TITL 3 VARIANTS. JRNL REF NAT COMMUN V. 14 767 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36765055 JRNL DOI 10.1038/S41467-023-36367-6 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 9892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.110 REMARK 3 FREE R VALUE TEST SET COUNT : 407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7100 - 4.0400 1.00 3492 130 0.2282 0.2266 REMARK 3 2 4.0400 - 3.2100 1.00 3426 175 0.2550 0.3000 REMARK 3 3 3.2100 - 2.8000 0.73 2567 102 0.2967 0.4058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8065 13.6707 -22.1209 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.1908 REMARK 3 T33: 0.1046 T12: -0.0257 REMARK 3 T13: -0.0580 T23: 0.1720 REMARK 3 L TENSOR REMARK 3 L11: 0.1016 L22: 0.0704 REMARK 3 L33: 0.0345 L12: -0.0544 REMARK 3 L13: -0.0402 L23: 0.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.0818 S13: -0.0593 REMARK 3 S21: 0.2156 S22: 0.0789 S23: 0.0007 REMARK 3 S31: -0.1007 S32: -0.0234 S33: -0.0259 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.3898 3.7561 -42.0308 REMARK 3 T TENSOR REMARK 3 T11: 0.6866 T22: 0.5954 REMARK 3 T33: 0.5939 T12: 0.0321 REMARK 3 T13: -0.0055 T23: -0.3555 REMARK 3 L TENSOR REMARK 3 L11: 0.0509 L22: 0.0430 REMARK 3 L33: 0.0310 L12: -0.0464 REMARK 3 L13: 0.0408 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0136 S13: -0.0258 REMARK 3 S21: -0.0521 S22: 0.0250 S23: 0.0554 REMARK 3 S31: 0.0965 S32: 0.0464 S33: 0.0671 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0268 6.3398 -25.2308 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.2135 REMARK 3 T33: 0.2386 T12: -0.0913 REMARK 3 T13: 0.0881 T23: 0.2656 REMARK 3 L TENSOR REMARK 3 L11: 0.2561 L22: 0.1713 REMARK 3 L33: 0.3947 L12: -0.0768 REMARK 3 L13: 0.0423 L23: 0.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.2633 S13: -0.3879 REMARK 3 S21: 0.1475 S22: -0.2103 S23: -0.1652 REMARK 3 S31: 0.2576 S32: 0.1006 S33: -0.3026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.1659 5.7446 -22.1916 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.4113 REMARK 3 T33: 0.4635 T12: -0.0380 REMARK 3 T13: 0.2860 T23: 0.2031 REMARK 3 L TENSOR REMARK 3 L11: 0.0671 L22: 0.0266 REMARK 3 L33: 0.0192 L12: 0.0279 REMARK 3 L13: -0.0179 L23: -0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0408 S13: -0.0317 REMARK 3 S21: 0.0771 S22: -0.0226 S23: 0.0892 REMARK 3 S31: 0.0106 S32: -0.0577 S33: 0.0969 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.1382 15.7858 -34.9519 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: 0.2730 REMARK 3 T33: -0.2302 T12: 0.0358 REMARK 3 T13: 0.0757 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.0944 L22: 0.0361 REMARK 3 L33: 0.0272 L12: -0.0150 REMARK 3 L13: -0.0098 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: 0.0981 S13: -0.1408 REMARK 3 S21: -0.0710 S22: -0.0273 S23: 0.0276 REMARK 3 S31: 0.0459 S32: 0.0199 S33: -0.0667 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.5350 16.0542 -37.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.3735 REMARK 3 T33: 0.1103 T12: 0.0121 REMARK 3 T13: -0.0777 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.0452 L22: 0.3141 REMARK 3 L33: 0.0423 L12: -0.1097 REMARK 3 L13: 0.0377 L23: -0.0620 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: 0.1681 S13: -0.1309 REMARK 3 S21: -0.2592 S22: -0.0610 S23: 0.1498 REMARK 3 S31: -0.0324 S32: -0.0637 S33: -0.0829 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4789 16.8658 -51.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.8462 T22: 0.7698 REMARK 3 T33: 0.2118 T12: -0.1268 REMARK 3 T13: 0.2161 T23: -0.2251 REMARK 3 L TENSOR REMARK 3 L11: 0.0081 L22: 0.0257 REMARK 3 L33: 0.0121 L12: -0.0130 REMARK 3 L13: 0.0101 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0154 S13: -0.0163 REMARK 3 S21: -0.0395 S22: -0.0212 S23: 0.0131 REMARK 3 S31: -0.0223 S32: -0.0402 S33: -0.0633 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.2406 20.2770 -29.8326 REMARK 3 T TENSOR REMARK 3 T11: 0.3410 T22: 0.1361 REMARK 3 T33: 0.0492 T12: -0.0283 REMARK 3 T13: 0.3132 T23: -0.0701 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0323 REMARK 3 L33: 0.0409 L12: 0.0110 REMARK 3 L13: 0.0009 L23: -0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0033 S13: -0.0212 REMARK 3 S21: -0.0403 S22: 0.0518 S23: -0.0080 REMARK 3 S31: -0.0222 S32: -0.0042 S33: 0.1176 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.3408 10.1753 -33.9961 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.1616 REMARK 3 T33: 0.0682 T12: -0.1090 REMARK 3 T13: 0.3401 T23: -0.1995 REMARK 3 L TENSOR REMARK 3 L11: 0.0251 L22: 0.0096 REMARK 3 L33: 0.0454 L12: -0.0054 REMARK 3 L13: -0.0218 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.0463 S13: -0.2068 REMARK 3 S21: -0.1251 S22: 0.0135 S23: -0.0162 REMARK 3 S31: -0.0105 S32: 0.0570 S33: 0.1339 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5071 18.1208 -18.2593 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1246 REMARK 3 T33: -0.1494 T12: -0.1245 REMARK 3 T13: 0.1560 T23: 0.3047 REMARK 3 L TENSOR REMARK 3 L11: 0.0241 L22: 0.3835 REMARK 3 L33: 0.0464 L12: -0.0682 REMARK 3 L13: 0.0232 L23: -0.0913 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.2144 S13: -0.0159 REMARK 3 S21: 0.2687 S22: 0.0700 S23: 0.1818 REMARK 3 S31: -0.1057 S32: -0.1738 S33: -0.1189 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0080 3.9024 -10.9405 REMARK 3 T TENSOR REMARK 3 T11: 0.4326 T22: 0.7971 REMARK 3 T33: 0.8438 T12: 0.0691 REMARK 3 T13: 0.4417 T23: -0.1993 REMARK 3 L TENSOR REMARK 3 L11: 0.0282 L22: 0.3379 REMARK 3 L33: 0.0661 L12: -0.0102 REMARK 3 L13: 0.0316 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.6469 S13: 0.4270 REMARK 3 S21: 0.3108 S22: 0.1328 S23: 0.3603 REMARK 3 S31: -0.0928 S32: 0.0425 S33: 0.3528 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2973 6.3835 -23.2305 REMARK 3 T TENSOR REMARK 3 T11: -0.0161 T22: 0.1127 REMARK 3 T33: 0.3407 T12: -0.0198 REMARK 3 T13: -0.0052 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.3675 L22: 0.9193 REMARK 3 L33: 0.5680 L12: 0.2330 REMARK 3 L13: -0.0764 L23: -0.2066 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.0006 S13: 0.3573 REMARK 3 S21: -0.1696 S22: 0.0596 S23: 0.4535 REMARK 3 S31: -0.0913 S32: 0.0509 S33: 0.2935 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 344 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8587 9.0972 -11.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.3101 REMARK 3 T33: 0.4823 T12: 0.0278 REMARK 3 T13: 0.1707 T23: -0.2781 REMARK 3 L TENSOR REMARK 3 L11: 0.1463 L22: 0.4314 REMARK 3 L33: 0.1285 L12: -0.0278 REMARK 3 L13: -0.0107 L23: 0.2359 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: -0.3269 S13: 0.3691 REMARK 3 S21: 0.1561 S22: -0.0058 S23: 0.0887 REMARK 3 S31: -0.0221 S32: 0.1025 S33: 0.0070 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 365 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8196 2.8160 -15.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.3081 REMARK 3 T33: 0.6266 T12: -0.0164 REMARK 3 T13: -0.0088 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.1533 L22: 0.2269 REMARK 3 L33: 0.0195 L12: 0.0423 REMARK 3 L13: -0.0289 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.0781 S13: 0.1633 REMARK 3 S21: 0.1982 S22: -0.0873 S23: 0.4224 REMARK 3 S31: -0.2045 S32: 0.0277 S33: -0.0174 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 44 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7247 -2.7506 -19.7953 REMARK 3 T TENSOR REMARK 3 T11: 0.3847 T22: 0.2650 REMARK 3 T33: 0.6803 T12: -0.0736 REMARK 3 T13: -0.1595 T23: 0.2543 REMARK 3 L TENSOR REMARK 3 L11: 0.1907 L22: 0.5721 REMARK 3 L33: 0.0484 L12: -0.1948 REMARK 3 L13: 0.0926 L23: -0.1362 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: -0.1124 S13: -0.3160 REMARK 3 S21: 0.3947 S22: 0.0529 S23: -0.1856 REMARK 3 S31: 0.0071 S32: 0.0284 S33: 0.1279 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 102 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2220 -12.3740 -35.5825 REMARK 3 T TENSOR REMARK 3 T11: 0.9231 T22: 0.9374 REMARK 3 T33: 1.1562 T12: -0.1417 REMARK 3 T13: -0.4192 T23: -0.3526 REMARK 3 L TENSOR REMARK 3 L11: 0.0954 L22: 0.2642 REMARK 3 L33: 0.2689 L12: 0.0429 REMARK 3 L13: -0.0885 L23: -0.2603 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.1140 S13: -0.0003 REMARK 3 S21: 0.0927 S22: 0.1292 S23: 0.1029 REMARK 3 S31: 0.1038 S32: 0.1764 S33: 0.2045 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT REMARK 4 REMARK 4 7X9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1300024566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE, PH9.0, 25% PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.58450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.16352 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.11800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.58450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.16352 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.11800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.58450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.16352 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.11800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.32705 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 104.23600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.32705 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 104.23600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.32705 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.23600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 233 REMARK 465 PRO A 234 REMARK 465 SER A 235 REMARK 465 GLY A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 ASP A 239 REMARK 465 LYS A 240 REMARK 465 ALA A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 ARG A 244 REMARK 465 GLU A 245 REMARK 465 ASN A 246 REMARK 465 SER A 391 REMARK 465 GLY B 233 REMARK 465 PRO B 234 REMARK 465 SER B 235 REMARK 465 GLY B 236 REMARK 465 ALA B 237 REMARK 465 ALA B 238 REMARK 465 ASP B 239 REMARK 465 LYS B 240 REMARK 465 ALA B 241 REMARK 465 GLY B 242 REMARK 465 THR B 243 REMARK 465 ARG B 244 REMARK 465 GLU B 245 REMARK 465 ASN B 246 REMARK 465 ALA B 390 REMARK 465 SER B 391 REMARK 465 TYR C 28 REMARK 465 SER C 29 REMARK 465 ASN C 30 REMARK 465 CYS C 31 REMARK 465 GLY C 32 REMARK 465 GLU C 33 REMARK 465 ASN C 34 REMARK 465 GLU C 35 REMARK 465 TYR C 36 REMARK 465 TYR C 37 REMARK 465 ASN C 38 REMARK 465 GLN C 39 REMARK 465 THR C 40 REMARK 465 THR C 41 REMARK 465 GLY C 42 REMARK 465 LEU C 43 REMARK 465 CYS C 60 REMARK 465 GLY C 61 REMARK 465 TYR C 62 REMARK 465 GLY C 63 REMARK 465 THR C 64 REMARK 465 LYS C 65 REMARK 465 GLY C 119 REMARK 465 TYR C 120 REMARK 465 TYR C 121 REMARK 465 MET C 122 REMARK 465 LEU C 123 REMARK 465 GLU C 124 REMARK 465 ASN C 125 REMARK 465 ARG C 126 REMARK 465 CYS C 138 REMARK 465 LEU C 139 REMARK 465 LEU C 140 REMARK 465 ALA C 141 REMARK 465 PRO C 142 REMARK 465 PRO C 143 REMARK 465 ASN C 144 REMARK 465 THR C 145 REMARK 465 LYS C 146 REMARK 465 GLU C 147 REMARK 465 CYS C 148 REMARK 465 VAL C 149 REMARK 465 GLY C 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 247 CB CG CD OE1 NE2 REMARK 470 GLN B 247 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 261 N - CA - C ANGL. DEV. = -29.1 DEGREES REMARK 500 VAL A 262 N - CA - CB ANGL. DEV. = -16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 256 47.46 -101.36 REMARK 500 SER A 258 155.13 -48.91 REMARK 500 PHE A 314 35.52 36.83 REMARK 500 THR A 315 -33.66 -138.18 REMARK 500 ASP A 316 22.10 48.64 REMARK 500 GLU A 326 -1.97 73.49 REMARK 500 PHE A 329 -51.73 -137.12 REMARK 500 ARG A 357 2.46 82.63 REMARK 500 PHE B 314 30.98 73.67 REMARK 500 THR B 315 -46.48 -139.70 REMARK 500 ASP B 316 -5.72 77.36 REMARK 500 PHE B 329 -63.29 -121.79 REMARK 500 PRO C 48 109.70 -54.02 REMARK 500 ASP C 68 37.78 -91.80 REMARK 500 PRO C 75 173.38 -54.19 REMARK 500 GLU C 77 42.23 -108.14 REMARK 500 LYS C 81 43.68 -94.48 REMARK 500 GLU C 108 29.51 40.13 REMARK 500 PRO C 115 -174.28 -69.79 REMARK 500 MET C 133 -77.04 -106.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 98 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7X9G A 233 391 UNP Q92838 EDA_HUMAN 233 391 DBREF 7X9G B 233 391 UNP Q92838 EDA_HUMAN 233 391 DBREF 7X9G C 28 150 UNP Q9UNE0 EDAR_HUMAN 28 150 SEQRES 1 A 159 GLY PRO SER GLY ALA ALA ASP LYS ALA GLY THR ARG GLU SEQRES 2 A 159 ASN GLN PRO ALA VAL VAL HIS LEU GLN GLY GLN GLY SER SEQRES 3 A 159 ALA ILE GLN VAL LYS ASN ASP LEU SER GLY GLY VAL LEU SEQRES 4 A 159 ASN ASP TRP SER ARG ILE THR MET ASN PRO LYS VAL PHE SEQRES 5 A 159 LYS LEU HIS PRO ARG SER GLY GLU LEU GLU VAL LEU VAL SEQRES 6 A 159 ASP GLY THR TYR PHE ILE TYR SER GLN VAL GLU VAL TYR SEQRES 7 A 159 TYR ILE ASN PHE THR ASP PHE ALA SER TYR GLU VAL VAL SEQRES 8 A 159 VAL ASP GLU LYS PRO PHE LEU GLN CYS THR ARG SER ILE SEQRES 9 A 159 GLU THR GLY LYS THR ASN TYR ASN THR CYS TYR THR ALA SEQRES 10 A 159 GLY VAL CYS LEU LEU LYS ALA ARG GLN LYS ILE ALA VAL SEQRES 11 A 159 LYS MET VAL HIS ALA ASP ILE SER ILE ASN MET SER LYS SEQRES 12 A 159 HIS THR THR PHE PHE GLY ALA ILE ARG LEU GLY GLU ALA SEQRES 13 A 159 PRO ALA SER SEQRES 1 B 159 GLY PRO SER GLY ALA ALA ASP LYS ALA GLY THR ARG GLU SEQRES 2 B 159 ASN GLN PRO ALA VAL VAL HIS LEU GLN GLY GLN GLY SER SEQRES 3 B 159 ALA ILE GLN VAL LYS ASN ASP LEU SER GLY GLY VAL LEU SEQRES 4 B 159 ASN ASP TRP SER ARG ILE THR MET ASN PRO LYS VAL PHE SEQRES 5 B 159 LYS LEU HIS PRO ARG SER GLY GLU LEU GLU VAL LEU VAL SEQRES 6 B 159 ASP GLY THR TYR PHE ILE TYR SER GLN VAL GLU VAL TYR SEQRES 7 B 159 TYR ILE ASN PHE THR ASP PHE ALA SER TYR GLU VAL VAL SEQRES 8 B 159 VAL ASP GLU LYS PRO PHE LEU GLN CYS THR ARG SER ILE SEQRES 9 B 159 GLU THR GLY LYS THR ASN TYR ASN THR CYS TYR THR ALA SEQRES 10 B 159 GLY VAL CYS LEU LEU LYS ALA ARG GLN LYS ILE ALA VAL SEQRES 11 B 159 LYS MET VAL HIS ALA ASP ILE SER ILE ASN MET SER LYS SEQRES 12 B 159 HIS THR THR PHE PHE GLY ALA ILE ARG LEU GLY GLU ALA SEQRES 13 B 159 PRO ALA SER SEQRES 1 C 123 TYR SER ASN CYS GLY GLU ASN GLU TYR TYR ASN GLN THR SEQRES 2 C 123 THR GLY LEU CYS GLN GLU CYS PRO PRO CYS GLY PRO GLY SEQRES 3 C 123 GLU GLU PRO TYR LEU SER CYS GLY TYR GLY THR LYS ASP SEQRES 4 C 123 GLU ASP TYR GLY CYS VAL PRO CYS PRO ALA GLU LYS PHE SEQRES 5 C 123 SER LYS GLY GLY TYR GLN ILE CYS ARG ARG HIS LYS ASP SEQRES 6 C 123 CYS GLU GLY PHE PHE ARG ALA THR VAL LEU THR PRO GLY SEQRES 7 C 123 ASP MET GLU ASN ASP ALA GLU CYS GLY PRO CYS LEU PRO SEQRES 8 C 123 GLY TYR TYR MET LEU GLU ASN ARG PRO ARG ASN ILE TYR SEQRES 9 C 123 GLY MET VAL CYS TYR SER CYS LEU LEU ALA PRO PRO ASN SEQRES 10 C 123 THR LYS GLU CYS VAL GLY HELIX 1 AA1 VAL A 262 LEU A 266 1 5 HELIX 2 AA2 VAL B 262 LEU B 266 1 5 HELIX 3 AA3 ASP C 92 PHE C 97 1 6 SHEET 1 AA1 6 ALA A 259 GLN A 261 0 SHEET 2 AA1 6 SER A 370 ASN A 372 -1 O ILE A 371 N ILE A 260 SHEET 3 AA1 6 GLY A 299 TYR A 311 -1 N GLU A 308 O ASN A 372 SHEET 4 AA1 6 PHE A 379 GLY A 386 -1 O PHE A 379 N GLN A 306 SHEET 5 AA1 6 ALA A 249 GLY A 255 -1 N LEU A 253 O PHE A 380 SHEET 6 AA1 6 TRP A 274 MET A 279 -1 O SER A 275 N GLN A 254 SHEET 1 AA2 4 ALA A 259 GLN A 261 0 SHEET 2 AA2 4 SER A 370 ASN A 372 -1 O ILE A 371 N ILE A 260 SHEET 3 AA2 4 GLY A 299 TYR A 311 -1 N GLU A 308 O ASN A 372 SHEET 4 AA2 4 ASN A 344 LEU A 354 -1 O CYS A 352 N TYR A 301 SHEET 1 AA3 5 PHE A 284 LEU A 286 0 SHEET 2 AA3 5 LEU A 293 VAL A 295 -1 O GLU A 294 N LYS A 285 SHEET 3 AA3 5 LYS A 359 MET A 364 -1 O ILE A 360 N LEU A 293 SHEET 4 AA3 5 ALA A 318 VAL A 324 -1 N GLU A 321 O LYS A 363 SHEET 5 AA3 5 LYS A 327 ARG A 334 -1 O LYS A 327 N VAL A 324 SHEET 1 AA4 6 ALA B 259 GLN B 261 0 SHEET 2 AA4 6 ILE B 369 ASN B 372 -1 O ILE B 371 N ILE B 260 SHEET 3 AA4 6 GLY B 299 ILE B 312 -1 N TYR B 310 O SER B 370 SHEET 4 AA4 6 PHE B 379 GLY B 386 -1 O GLY B 381 N TYR B 304 SHEET 5 AA4 6 VAL B 250 GLY B 255 -1 N LEU B 253 O PHE B 380 SHEET 6 AA4 6 TRP B 274 ARG B 276 -1 O SER B 275 N GLN B 254 SHEET 1 AA5 4 ALA B 259 GLN B 261 0 SHEET 2 AA5 4 ILE B 369 ASN B 372 -1 O ILE B 371 N ILE B 260 SHEET 3 AA5 4 GLY B 299 ILE B 312 -1 N TYR B 310 O SER B 370 SHEET 4 AA5 4 ASN B 344 LEU B 354 -1 O LEU B 354 N GLY B 299 SHEET 1 AA6 5 PHE B 284 HIS B 287 0 SHEET 2 AA6 5 GLU B 292 VAL B 295 -1 O GLU B 294 N LYS B 285 SHEET 3 AA6 5 LYS B 359 MET B 364 -1 O ILE B 360 N LEU B 293 SHEET 4 AA6 5 PHE B 317 VAL B 324 -1 N GLU B 321 O LYS B 363 SHEET 5 AA6 5 PRO B 328 SER B 335 -1 O ARG B 334 N ALA B 318 SHEET 1 AA7 2 GLU C 54 TYR C 57 0 SHEET 2 AA7 2 GLY C 70 PRO C 73 -1 O VAL C 72 N GLU C 55 SHEET 1 AA8 2 LYS C 78 PHE C 79 0 SHEET 2 AA8 2 ARG C 88 ARG C 89 -1 O ARG C 88 N PHE C 79 SHEET 1 AA9 2 THR C 100 LEU C 102 0 SHEET 2 AA9 2 GLU C 112 CYS C 113 -1 O GLU C 112 N LEU C 102 SSBOND 1 CYS C 50 CYS C 71 1555 1555 2.04 SSBOND 2 CYS C 74 CYS C 87 1555 1555 2.02 SSBOND 3 CYS C 116 CYS C 135 1555 1555 2.04 CRYST1 87.169 87.169 156.354 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011472 0.006623 0.000000 0.00000 SCALE2 0.000000 0.013247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006396 0.00000