HEADER HYDROLASE 21-MAR-22 7XBB
TITLE CRYSTAL STRUCTURE OF PDE4D CATALYTIC DOMAIN COMPLEXED WITH COMPOUND
TITLE 2 23A
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ISOFORM 3 OF CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE
COMPND 3 4D;
COMPND 4 CHAIN: A, B;
COMPND 5 SYNONYM: DPDE3,PDE43;
COMPND 6 EC: 3.1.4.53;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PDE4D, DPDE3;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693
KEYWDS PDE4 INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.-Y.HUANG,H.-B.LUO
REVDAT 2 29-NOV-23 7XBB 1 REMARK
REVDAT 1 06-JUL-22 7XBB 0
JRNL AUTH F.ZHOU,Y.HUANG,L.LIU,Z.SONG,K.Q.HOU,Y.YANG,H.B.LUO,
JRNL AUTH 2 Y.Y.HUANG,X.F.XIONG
JRNL TITL STRUCTURE-BASED OPTIMIZATION OF TODDACOUMALONE AS HIGHLY
JRNL TITL 2 POTENT AND SELECTIVE PDE4 INHIBITORS WITH ANTI-INFLAMMATORY
JRNL TITL 3 EFFECTS.
JRNL REF BIOCHEM PHARMACOL V. 202 15123 2022
JRNL REFN ISSN 1873-2968
JRNL PMID 35688178
JRNL DOI 10.1016/J.BCP.2022.115123
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.10_2155
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.34
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.366
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 45271
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.213
REMARK 3 R VALUE (WORKING SET) : 0.211
REMARK 3 FREE R VALUE : 0.244
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.917
REMARK 3 FREE R VALUE TEST SET COUNT : 2226
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.3360 - 5.2748 0.97 2809 140 0.1845 0.2206
REMARK 3 2 5.2748 - 4.1937 1.00 2769 146 0.1711 0.2091
REMARK 3 3 4.1937 - 3.6657 1.00 2706 149 0.1891 0.2129
REMARK 3 4 3.6657 - 3.3314 1.00 2716 147 0.1981 0.2160
REMARK 3 5 3.3314 - 3.0931 1.00 2669 151 0.2095 0.2077
REMARK 3 6 3.0931 - 2.9111 1.00 2687 136 0.2164 0.2420
REMARK 3 7 2.9111 - 2.7655 1.00 2680 128 0.2206 0.2689
REMARK 3 8 2.7655 - 2.6453 1.00 2698 154 0.2246 0.2777
REMARK 3 9 2.6453 - 2.5436 1.00 2652 138 0.2279 0.2864
REMARK 3 10 2.5436 - 2.4559 1.00 2695 136 0.2358 0.2560
REMARK 3 11 2.4559 - 2.3791 1.00 2688 118 0.2257 0.2769
REMARK 3 12 2.3791 - 2.3112 1.00 2635 126 0.2421 0.2711
REMARK 3 13 2.3112 - 2.2504 1.00 2656 139 0.2451 0.2795
REMARK 3 14 2.2504 - 2.1955 1.00 2678 131 0.2467 0.2998
REMARK 3 15 2.1955 - 2.1456 1.00 2644 148 0.2544 0.2902
REMARK 3 16 2.1456 - 2.1000 1.00 2663 139 0.2629 0.3056
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.212
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.781
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.36
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 5394
REMARK 3 ANGLE : 1.027 7334
REMARK 3 CHIRALITY : 0.042 842
REMARK 3 PLANARITY : 0.006 938
REMARK 3 DIHEDRAL : 15.373 3244
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7XBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-22.
REMARK 100 THE DEPOSITION ID IS D_1300028472.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-JAN-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-3000
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO
REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45273
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 24.340
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 4.800
REMARK 200 R MERGE (I) : 0.08400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.30
REMARK 200 R MERGE FOR SHELL (I) : 0.29300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5WQA
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.4), 0.1 M MGCL2, 15%
REMARK 280 PEG 3350, 10% ISOPROPANOL, 25% ETHYLENE GLYCOL, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.02850
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.45900
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.20800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.45900
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.02850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.20800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 27540 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 SER A 3
REMARK 465 ASN A 4
REMARK 465 LYS A 5
REMARK 465 PHE A 6
REMARK 465 LYS A 7
REMARK 465 ARG A 8
REMARK 465 MET A 9
REMARK 465 LEU A 10
REMARK 465 ASN A 11
REMARK 465 ARG A 12
REMARK 465 GLU A 13
REMARK 465 LEU A 14
REMARK 465 THR A 15
REMARK 465 HIS A 16
REMARK 465 LEU A 17
REMARK 465 SER A 18
REMARK 465 GLU A 19
REMARK 465 MET A 20
REMARK 465 SER A 21
REMARK 465 ARG A 22
REMARK 465 SER A 23
REMARK 465 GLY A 24
REMARK 465 ASN A 25
REMARK 465 GLN A 26
REMARK 465 VAL A 27
REMARK 465 SER A 28
REMARK 465 GLU A 29
REMARK 465 PHE A 30
REMARK 465 ILE A 31
REMARK 465 SER A 32
REMARK 465 ASN A 33
REMARK 465 THR A 34
REMARK 465 PHE A 35
REMARK 465 LEU A 36
REMARK 465 ASP A 37
REMARK 465 LYS A 38
REMARK 465 GLN A 39
REMARK 465 HIS A 40
REMARK 465 GLU A 41
REMARK 465 VAL A 42
REMARK 465 GLU A 43
REMARK 465 ILE A 44
REMARK 465 PRO A 45
REMARK 465 SER A 46
REMARK 465 PRO A 47
REMARK 465 THR A 48
REMARK 465 GLN A 49
REMARK 465 LYS A 50
REMARK 465 GLU A 51
REMARK 465 LYS A 52
REMARK 465 GLU A 53
REMARK 465 LYS A 54
REMARK 465 LYS A 55
REMARK 465 LYS A 56
REMARK 465 ARG A 57
REMARK 465 PRO A 58
REMARK 465 MET A 59
REMARK 465 SER A 60
REMARK 465 GLN A 61
REMARK 465 ILE A 62
REMARK 465 SER A 63
REMARK 465 GLY A 64
REMARK 465 VAL A 65
REMARK 465 LYS A 66
REMARK 465 LYS A 67
REMARK 465 LEU A 68
REMARK 465 MET A 69
REMARK 465 HIS A 70
REMARK 465 SER A 71
REMARK 465 SER A 72
REMARK 465 SER A 73
REMARK 465 LEU A 74
REMARK 465 THR A 75
REMARK 465 ASN A 76
REMARK 465 SER A 77
REMARK 465 SER A 78
REMARK 465 ILE A 79
REMARK 465 PRO A 80
REMARK 465 ARG A 81
REMARK 465 PHE A 82
REMARK 465 GLY A 83
REMARK 465 VAL A 84
REMARK 465 LYS A 85
REMARK 465 THR A 86
REMARK 465 GLU A 87
REMARK 465 PRO A 411
REMARK 465 GLN A 412
REMARK 465 SER A 413
REMARK 465 PRO A 414
REMARK 465 SER A 415
REMARK 465 PRO A 416
REMARK 465 ALA A 417
REMARK 465 PRO A 418
REMARK 465 ASP A 419
REMARK 465 ASP A 420
REMARK 465 PRO A 421
REMARK 465 GLU A 422
REMARK 465 GLU A 423
REMARK 465 GLY A 424
REMARK 465 ARG A 425
REMARK 465 GLN A 426
REMARK 465 GLY A 427
REMARK 465 GLN A 428
REMARK 465 THR A 429
REMARK 465 GLU A 430
REMARK 465 LYS A 431
REMARK 465 PHE A 432
REMARK 465 GLN A 433
REMARK 465 PHE A 434
REMARK 465 GLU A 435
REMARK 465 LEU A 436
REMARK 465 THR A 437
REMARK 465 LEU A 438
REMARK 465 GLU A 439
REMARK 465 GLU A 440
REMARK 465 ASP A 441
REMARK 465 GLY A 442
REMARK 465 GLU A 443
REMARK 465 SER A 444
REMARK 465 ASP A 445
REMARK 465 THR A 446
REMARK 465 GLU A 447
REMARK 465 LYS A 448
REMARK 465 ASP A 449
REMARK 465 SER A 450
REMARK 465 GLY A 451
REMARK 465 SER A 452
REMARK 465 GLN A 453
REMARK 465 VAL A 454
REMARK 465 GLU A 455
REMARK 465 GLU A 456
REMARK 465 ASP A 457
REMARK 465 THR A 458
REMARK 465 SER A 459
REMARK 465 CYS A 460
REMARK 465 SER A 461
REMARK 465 ASP A 462
REMARK 465 SER A 463
REMARK 465 LYS A 464
REMARK 465 THR A 465
REMARK 465 LEU A 466
REMARK 465 CYS A 467
REMARK 465 THR A 468
REMARK 465 GLN A 469
REMARK 465 ASP A 470
REMARK 465 SER A 471
REMARK 465 GLU A 472
REMARK 465 SER A 473
REMARK 465 THR A 474
REMARK 465 GLU A 475
REMARK 465 ILE A 476
REMARK 465 PRO A 477
REMARK 465 LEU A 478
REMARK 465 ASP A 479
REMARK 465 GLU A 480
REMARK 465 GLN A 481
REMARK 465 VAL A 482
REMARK 465 GLU A 483
REMARK 465 GLU A 484
REMARK 465 GLU A 485
REMARK 465 ALA A 486
REMARK 465 VAL A 487
REMARK 465 GLY A 488
REMARK 465 GLU A 489
REMARK 465 GLU A 490
REMARK 465 GLU A 491
REMARK 465 GLU A 492
REMARK 465 SER A 493
REMARK 465 GLN A 494
REMARK 465 PRO A 495
REMARK 465 GLU A 496
REMARK 465 ALA A 497
REMARK 465 CYS A 498
REMARK 465 VAL A 499
REMARK 465 ILE A 500
REMARK 465 ASP A 501
REMARK 465 ASP A 502
REMARK 465 ARG A 503
REMARK 465 SER A 504
REMARK 465 PRO A 505
REMARK 465 ASP A 506
REMARK 465 THR A 507
REMARK 465 MET B 1
REMARK 465 ALA B 2
REMARK 465 SER B 3
REMARK 465 ASN B 4
REMARK 465 LYS B 5
REMARK 465 PHE B 6
REMARK 465 LYS B 7
REMARK 465 ARG B 8
REMARK 465 MET B 9
REMARK 465 LEU B 10
REMARK 465 ASN B 11
REMARK 465 ARG B 12
REMARK 465 GLU B 13
REMARK 465 LEU B 14
REMARK 465 THR B 15
REMARK 465 HIS B 16
REMARK 465 LEU B 17
REMARK 465 SER B 18
REMARK 465 GLU B 19
REMARK 465 MET B 20
REMARK 465 SER B 21
REMARK 465 ARG B 22
REMARK 465 SER B 23
REMARK 465 GLY B 24
REMARK 465 ASN B 25
REMARK 465 GLN B 26
REMARK 465 VAL B 27
REMARK 465 SER B 28
REMARK 465 GLU B 29
REMARK 465 PHE B 30
REMARK 465 ILE B 31
REMARK 465 SER B 32
REMARK 465 ASN B 33
REMARK 465 THR B 34
REMARK 465 PHE B 35
REMARK 465 LEU B 36
REMARK 465 ASP B 37
REMARK 465 LYS B 38
REMARK 465 GLN B 39
REMARK 465 HIS B 40
REMARK 465 GLU B 41
REMARK 465 VAL B 42
REMARK 465 GLU B 43
REMARK 465 ILE B 44
REMARK 465 PRO B 45
REMARK 465 SER B 46
REMARK 465 PRO B 47
REMARK 465 THR B 48
REMARK 465 GLN B 49
REMARK 465 LYS B 50
REMARK 465 GLU B 51
REMARK 465 LYS B 52
REMARK 465 GLU B 53
REMARK 465 LYS B 54
REMARK 465 LYS B 55
REMARK 465 LYS B 56
REMARK 465 ARG B 57
REMARK 465 PRO B 58
REMARK 465 MET B 59
REMARK 465 SER B 60
REMARK 465 GLN B 61
REMARK 465 ILE B 62
REMARK 465 SER B 63
REMARK 465 GLY B 64
REMARK 465 VAL B 65
REMARK 465 LYS B 66
REMARK 465 LYS B 67
REMARK 465 LEU B 68
REMARK 465 MET B 69
REMARK 465 HIS B 70
REMARK 465 SER B 71
REMARK 465 SER B 72
REMARK 465 SER B 73
REMARK 465 LEU B 74
REMARK 465 THR B 75
REMARK 465 ASN B 76
REMARK 465 SER B 77
REMARK 465 SER B 78
REMARK 465 ILE B 79
REMARK 465 PRO B 80
REMARK 465 ARG B 81
REMARK 465 PHE B 82
REMARK 465 GLY B 83
REMARK 465 VAL B 84
REMARK 465 LYS B 85
REMARK 465 THR B 86
REMARK 465 GLU B 87
REMARK 465 PRO B 411
REMARK 465 GLN B 412
REMARK 465 SER B 413
REMARK 465 PRO B 414
REMARK 465 SER B 415
REMARK 465 PRO B 416
REMARK 465 ALA B 417
REMARK 465 PRO B 418
REMARK 465 ASP B 419
REMARK 465 ASP B 420
REMARK 465 PRO B 421
REMARK 465 GLU B 422
REMARK 465 GLU B 423
REMARK 465 GLY B 424
REMARK 465 ARG B 425
REMARK 465 GLN B 426
REMARK 465 GLY B 427
REMARK 465 GLN B 428
REMARK 465 THR B 429
REMARK 465 GLU B 430
REMARK 465 LYS B 431
REMARK 465 PHE B 432
REMARK 465 GLN B 433
REMARK 465 PHE B 434
REMARK 465 GLU B 435
REMARK 465 LEU B 436
REMARK 465 THR B 437
REMARK 465 LEU B 438
REMARK 465 GLU B 439
REMARK 465 GLU B 440
REMARK 465 ASP B 441
REMARK 465 GLY B 442
REMARK 465 GLU B 443
REMARK 465 SER B 444
REMARK 465 ASP B 445
REMARK 465 THR B 446
REMARK 465 GLU B 447
REMARK 465 LYS B 448
REMARK 465 ASP B 449
REMARK 465 SER B 450
REMARK 465 GLY B 451
REMARK 465 SER B 452
REMARK 465 GLN B 453
REMARK 465 VAL B 454
REMARK 465 GLU B 455
REMARK 465 GLU B 456
REMARK 465 ASP B 457
REMARK 465 THR B 458
REMARK 465 SER B 459
REMARK 465 CYS B 460
REMARK 465 SER B 461
REMARK 465 ASP B 462
REMARK 465 SER B 463
REMARK 465 LYS B 464
REMARK 465 THR B 465
REMARK 465 LEU B 466
REMARK 465 CYS B 467
REMARK 465 THR B 468
REMARK 465 GLN B 469
REMARK 465 ASP B 470
REMARK 465 SER B 471
REMARK 465 GLU B 472
REMARK 465 SER B 473
REMARK 465 THR B 474
REMARK 465 GLU B 475
REMARK 465 ILE B 476
REMARK 465 PRO B 477
REMARK 465 LEU B 478
REMARK 465 ASP B 479
REMARK 465 GLU B 480
REMARK 465 GLN B 481
REMARK 465 VAL B 482
REMARK 465 GLU B 483
REMARK 465 GLU B 484
REMARK 465 GLU B 485
REMARK 465 ALA B 486
REMARK 465 VAL B 487
REMARK 465 GLY B 488
REMARK 465 GLU B 489
REMARK 465 GLU B 490
REMARK 465 GLU B 491
REMARK 465 GLU B 492
REMARK 465 SER B 493
REMARK 465 GLN B 494
REMARK 465 PRO B 495
REMARK 465 GLU B 496
REMARK 465 ALA B 497
REMARK 465 CYS B 498
REMARK 465 VAL B 499
REMARK 465 ILE B 500
REMARK 465 ASP B 501
REMARK 465 ASP B 502
REMARK 465 ARG B 503
REMARK 465 SER B 504
REMARK 465 PRO B 505
REMARK 465 ASP B 506
REMARK 465 THR B 507
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP B 301 O HOH B 701 1.57
REMARK 500 OE2 GLU B 189 NH1 ARG B 306 1.60
REMARK 500 O HOH B 855 O HOH B 857 1.87
REMARK 500 O HOH B 706 O HOH B 808 1.88
REMARK 500 N ALA B 392 O HOH B 702 1.91
REMARK 500 NE2 GLN A 308 O HOH A 701 1.91
REMARK 500 O HOH A 899 O HOH A 935 1.92
REMARK 500 NH1 ARG A 108 O HOH A 702 1.93
REMARK 500 O CYS B 358 O HOH B 703 1.94
REMARK 500 O HOH A 727 O HOH A 897 1.94
REMARK 500 O HOH B 778 O HOH B 846 1.94
REMARK 500 O HOH A 944 O HOH A 952 1.96
REMARK 500 O HOH A 894 O HOH A 920 1.96
REMARK 500 O HOH A 805 O HOH A 847 1.97
REMARK 500 NH2 ARG B 257 O HOH B 704 1.98
REMARK 500 O HOH A 955 O HOH A 957 1.99
REMARK 500 NZ LYS A 254 O HOH A 703 1.99
REMARK 500 O HOH A 843 O HOH A 941 2.02
REMARK 500 O HOH B 832 O HOH B 844 2.02
REMARK 500 OD1 ASP A 140 O HOH A 704 2.02
REMARK 500 OE1 GLN B 327 O HOH B 705 2.03
REMARK 500 O HOH B 799 O HOH B 840 2.06
REMARK 500 O HOH A 849 O HOH A 950 2.07
REMARK 500 OE1 GLU B 189 NH2 ARG B 306 2.07
REMARK 500 O HOH B 839 O HOH B 851 2.07
REMARK 500 ND1 HIS B 378 O HOH B 706 2.10
REMARK 500 OE2 GLU A 218 O HOH A 705 2.10
REMARK 500 O HOH A 724 O HOH A 893 2.11
REMARK 500 OG1 THR B 186 N GLU B 189 2.12
REMARK 500 O HOH A 913 O HOH A 930 2.12
REMARK 500 OE2 GLU B 189 NH2 ARG B 306 2.12
REMARK 500 OG1 THR B 134 O HOH B 707 2.12
REMARK 500 O HOH B 757 O HOH B 808 2.13
REMARK 500 OE2 GLU B 189 CZ ARG B 306 2.13
REMARK 500 O HOH A 901 O HOH A 931 2.14
REMARK 500 OE1 GLN A 308 O HOH A 706 2.14
REMARK 500 ND2 ASN B 216 O HOH B 708 2.15
REMARK 500 O HOH B 719 O HOH B 741 2.16
REMARK 500 O HOH A 770 O HOH A 832 2.16
REMARK 500 SD MET A 277 O HOH A 952 2.16
REMARK 500 OD2 ASP B 282 O HOH B 709 2.16
REMARK 500 O HOH B 817 O HOH B 843 2.18
REMARK 500 O HOH A 774 O HOH A 915 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 731 O HOH A 922 3654 1.96
REMARK 500 O HOH A 860 O HOH B 701 3544 2.12
REMARK 500 O HOH A 810 O HOH B 794 3554 2.12
REMARK 500 O HOH A 904 O HOH B 848 2554 2.14
REMARK 500 NZ LYS A 94 OD1 ASP B 394 2554 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 ARG A 342 CZ ARG A 342 NH2 0.097
REMARK 500 ARG B 108 CD ARG B 108 NE 0.129
REMARK 500 ARG B 108 CZ ARG B 108 NH2 0.123
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG B 108 CB - CG - CD ANGL. DEV. = -17.5 DEGREES
REMARK 500 ASP B 130 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES
REMARK 500 ARG B 342 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 104 142.29 -33.60
REMARK 500 ILE A 376 -62.45 -125.97
REMARK 500 ASN B 161 -166.13 -127.12
REMARK 500 ALA B 180 2.30 -64.91
REMARK 500 THR B 186 177.57 -53.08
REMARK 500 LYS B 290 157.83 -46.41
REMARK 500 LEU B 319 37.64 -99.79
REMARK 500 ILE B 376 -62.81 -120.38
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 PRO B 390 ASP B 391 -143.39
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG B 108 0.08 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 164 NE2
REMARK 620 2 HIS A 200 NE2 92.8
REMARK 620 3 ASP A 201 OD2 89.5 82.7
REMARK 620 4 ASP A 318 OD1 86.0 85.4 167.1
REMARK 620 5 B6V A 603 O27 79.3 169.8 90.7 100.4
REMARK 620 6 HOH A 756 O 170.9 95.9 89.0 97.3 91.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 201 OD1
REMARK 620 2 HOH A 755 O 167.9
REMARK 620 3 HOH A 756 O 92.2 95.8
REMARK 620 4 HOH A 772 O 85.3 84.6 97.9
REMARK 620 5 HOH A 799 O 96.4 93.5 83.9 177.5
REMARK 620 6 HOH A 836 O 86.5 87.3 169.9 91.9 86.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS B 164 NE2
REMARK 620 2 HIS B 200 NE2 92.2
REMARK 620 3 ASP B 201 OD2 92.3 82.3
REMARK 620 4 ASP B 318 OD1 80.0 85.9 165.7
REMARK 620 5 B6V B 603 O27 84.3 175.4 94.7 96.4
REMARK 620 6 HOH B 759 O 173.7 93.2 91.6 97.2 90.4
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 602 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 201 OD1
REMARK 620 2 HOH B 714 O 77.5
REMARK 620 3 HOH B 722 O 163.4 89.1
REMARK 620 4 HOH B 759 O 90.4 96.8 100.8
REMARK 620 5 HOH B 766 O 101.8 176.7 91.0 86.5
REMARK 620 6 HOH B 780 O 87.5 93.2 83.6 169.1 83.5
REMARK 620 N 1 2 3 4 5
DBREF 7XBB A 1 507 UNP Q08499 PDE4D_HUMAN 167 673
DBREF 7XBB B 1 507 UNP Q08499 PDE4D_HUMAN 167 673
SEQRES 1 A 507 MET ALA SER ASN LYS PHE LYS ARG MET LEU ASN ARG GLU
SEQRES 2 A 507 LEU THR HIS LEU SER GLU MET SER ARG SER GLY ASN GLN
SEQRES 3 A 507 VAL SER GLU PHE ILE SER ASN THR PHE LEU ASP LYS GLN
SEQRES 4 A 507 HIS GLU VAL GLU ILE PRO SER PRO THR GLN LYS GLU LYS
SEQRES 5 A 507 GLU LYS LYS LYS ARG PRO MET SER GLN ILE SER GLY VAL
SEQRES 6 A 507 LYS LYS LEU MET HIS SER SER SER LEU THR ASN SER SER
SEQRES 7 A 507 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL
SEQRES 8 A 507 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU
SEQRES 9 A 507 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO
SEQRES 10 A 507 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP
SEQRES 11 A 507 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE
SEQRES 12 A 507 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP
SEQRES 13 A 507 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL
SEQRES 14 A 507 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU
SEQRES 15 A 507 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE
SEQRES 16 A 507 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER
SEQRES 17 A 507 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU
SEQRES 18 A 507 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU
SEQRES 19 A 507 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP
SEQRES 20 A 507 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU
SEQRES 21 A 507 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET
SEQRES 22 A 507 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET
SEQRES 23 A 507 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU
SEQRES 24 A 507 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN
SEQRES 25 A 507 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO
SEQRES 26 A 507 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU
SEQRES 27 A 507 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY
SEQRES 28 A 507 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER
SEQRES 29 A 507 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL
SEQRES 30 A 507 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO
SEQRES 31 A 507 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG
SEQRES 32 A 507 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO
SEQRES 33 A 507 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR
SEQRES 34 A 507 GLU LYS PHE GLN PHE GLU LEU THR LEU GLU GLU ASP GLY
SEQRES 35 A 507 GLU SER ASP THR GLU LYS ASP SER GLY SER GLN VAL GLU
SEQRES 36 A 507 GLU ASP THR SER CYS SER ASP SER LYS THR LEU CYS THR
SEQRES 37 A 507 GLN ASP SER GLU SER THR GLU ILE PRO LEU ASP GLU GLN
SEQRES 38 A 507 VAL GLU GLU GLU ALA VAL GLY GLU GLU GLU GLU SER GLN
SEQRES 39 A 507 PRO GLU ALA CYS VAL ILE ASP ASP ARG SER PRO ASP THR
SEQRES 1 B 507 MET ALA SER ASN LYS PHE LYS ARG MET LEU ASN ARG GLU
SEQRES 2 B 507 LEU THR HIS LEU SER GLU MET SER ARG SER GLY ASN GLN
SEQRES 3 B 507 VAL SER GLU PHE ILE SER ASN THR PHE LEU ASP LYS GLN
SEQRES 4 B 507 HIS GLU VAL GLU ILE PRO SER PRO THR GLN LYS GLU LYS
SEQRES 5 B 507 GLU LYS LYS LYS ARG PRO MET SER GLN ILE SER GLY VAL
SEQRES 6 B 507 LYS LYS LEU MET HIS SER SER SER LEU THR ASN SER SER
SEQRES 7 B 507 ILE PRO ARG PHE GLY VAL LYS THR GLU GLN GLU ASP VAL
SEQRES 8 B 507 LEU ALA LYS GLU LEU GLU ASP VAL ASN LYS TRP GLY LEU
SEQRES 9 B 507 HIS VAL PHE ARG ILE ALA GLU LEU SER GLY ASN ARG PRO
SEQRES 10 B 507 LEU THR VAL ILE MET HIS THR ILE PHE GLN GLU ARG ASP
SEQRES 11 B 507 LEU LEU LYS THR PHE LYS ILE PRO VAL ASP THR LEU ILE
SEQRES 12 B 507 THR TYR LEU MET THR LEU GLU ASP HIS TYR HIS ALA ASP
SEQRES 13 B 507 VAL ALA TYR HIS ASN ASN ILE HIS ALA ALA ASP VAL VAL
SEQRES 14 B 507 GLN SER THR HIS VAL LEU LEU SER THR PRO ALA LEU GLU
SEQRES 15 B 507 ALA VAL PHE THR ASP LEU GLU ILE LEU ALA ALA ILE PHE
SEQRES 16 B 507 ALA SER ALA ILE HIS ASP VAL ASP HIS PRO GLY VAL SER
SEQRES 17 B 507 ASN GLN PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU
SEQRES 18 B 507 MET TYR ASN ASP SER SER VAL LEU GLU ASN HIS HIS LEU
SEQRES 19 B 507 ALA VAL GLY PHE LYS LEU LEU GLN GLU GLU ASN CYS ASP
SEQRES 20 B 507 ILE PHE GLN ASN LEU THR LYS LYS GLN ARG GLN SER LEU
SEQRES 21 B 507 ARG LYS MET VAL ILE ASP ILE VAL LEU ALA THR ASP MET
SEQRES 22 B 507 SER LYS HIS MET ASN LEU LEU ALA ASP LEU LYS THR MET
SEQRES 23 B 507 VAL GLU THR LYS LYS VAL THR SER SER GLY VAL LEU LEU
SEQRES 24 B 507 LEU ASP ASN TYR SER ASP ARG ILE GLN VAL LEU GLN ASN
SEQRES 25 B 507 MET VAL HIS CYS ALA ASP LEU SER ASN PRO THR LYS PRO
SEQRES 26 B 507 LEU GLN LEU TYR ARG GLN TRP THR ASP ARG ILE MET GLU
SEQRES 27 B 507 GLU PHE PHE ARG GLN GLY ASP ARG GLU ARG GLU ARG GLY
SEQRES 28 B 507 MET GLU ILE SER PRO MET CYS ASP LYS HIS ASN ALA SER
SEQRES 29 B 507 VAL GLU LYS SER GLN VAL GLY PHE ILE ASP TYR ILE VAL
SEQRES 30 B 507 HIS PRO LEU TRP GLU THR TRP ALA ASP LEU VAL HIS PRO
SEQRES 31 B 507 ASP ALA GLN ASP ILE LEU ASP THR LEU GLU ASP ASN ARG
SEQRES 32 B 507 GLU TRP TYR GLN SER THR ILE PRO GLN SER PRO SER PRO
SEQRES 33 B 507 ALA PRO ASP ASP PRO GLU GLU GLY ARG GLN GLY GLN THR
SEQRES 34 B 507 GLU LYS PHE GLN PHE GLU LEU THR LEU GLU GLU ASP GLY
SEQRES 35 B 507 GLU SER ASP THR GLU LYS ASP SER GLY SER GLN VAL GLU
SEQRES 36 B 507 GLU ASP THR SER CYS SER ASP SER LYS THR LEU CYS THR
SEQRES 37 B 507 GLN ASP SER GLU SER THR GLU ILE PRO LEU ASP GLU GLN
SEQRES 38 B 507 VAL GLU GLU GLU ALA VAL GLY GLU GLU GLU GLU SER GLN
SEQRES 39 B 507 PRO GLU ALA CYS VAL ILE ASP ASP ARG SER PRO ASP THR
HET ZN A 601 1
HET MG A 602 1
HET B6V A 603 27
HET ZN B 601 1
HET MG B 602 1
HET B6V B 603 27
HETNAM ZN ZINC ION
HETNAM MG MAGNESIUM ION
HETNAM B6V (2~{R},4~{S})-6-ETHYL-2-[(2~{E})-2-HYDROXYIMINOETHYL]-
HETNAM 2 B6V 2,8-DIMETHYL-4-(2-METHYLPROP-1-ENYL)-3,4-
HETNAM 3 B6V DIHYDROPYRANO[3,2-C][1,8]NAPHTHYRIDIN-5-ONE
FORMUL 3 ZN 2(ZN 2+)
FORMUL 4 MG 2(MG 2+)
FORMUL 5 B6V 2(C21 H27 N3 O3)
FORMUL 9 HOH *417(H2 O)
HELIX 1 AA1 GLN A 88 LEU A 96 1 9
HELIX 2 AA2 GLU A 97 VAL A 99 5 3
HELIX 3 AA3 HIS A 105 SER A 113 1 9
HELIX 4 AA4 ARG A 116 ARG A 129 1 14
HELIX 5 AA5 ASP A 130 PHE A 135 1 6
HELIX 6 AA6 PRO A 138 HIS A 152 1 15
HELIX 7 AA7 ASN A 161 SER A 177 1 17
HELIX 8 AA8 THR A 178 GLU A 182 5 5
HELIX 9 AA9 THR A 186 HIS A 200 1 15
HELIX 10 AB1 SER A 208 THR A 215 1 8
HELIX 11 AB2 SER A 217 ASN A 224 1 8
HELIX 12 AB3 SER A 227 LEU A 240 1 14
HELIX 13 AB4 LEU A 241 GLU A 243 5 3
HELIX 14 AB5 THR A 253 ALA A 270 1 18
HELIX 15 AB6 THR A 271 SER A 274 5 4
HELIX 16 AB7 LYS A 275 THR A 289 1 15
HELIX 17 AB8 ASN A 302 LEU A 319 1 18
HELIX 18 AB9 SER A 320 LYS A 324 5 5
HELIX 19 AC1 PRO A 325 ARG A 350 1 26
HELIX 20 AC2 SER A 364 ILE A 376 1 13
HELIX 21 AC3 ILE A 376 VAL A 388 1 13
HELIX 22 AC4 ALA A 392 THR A 409 1 18
HELIX 23 AC5 GLU B 89 GLU B 97 1 9
HELIX 24 AC6 HIS B 105 SER B 113 1 9
HELIX 25 AC7 ARG B 116 ARG B 129 1 14
HELIX 26 AC8 ASP B 130 PHE B 135 1 6
HELIX 27 AC9 PRO B 138 HIS B 152 1 15
HELIX 28 AD1 ASN B 161 SER B 177 1 17
HELIX 29 AD2 THR B 178 GLU B 182 5 5
HELIX 30 AD3 THR B 186 HIS B 200 1 15
HELIX 31 AD4 SER B 208 THR B 215 1 8
HELIX 32 AD5 SER B 217 ASN B 224 1 8
HELIX 33 AD6 SER B 227 LEU B 240 1 14
HELIX 34 AD7 LEU B 241 GLU B 243 5 3
HELIX 35 AD8 THR B 253 ALA B 270 1 18
HELIX 36 AD9 THR B 271 SER B 274 5 4
HELIX 37 AE1 LYS B 275 THR B 289 1 15
HELIX 38 AE2 ASN B 302 LEU B 319 1 18
HELIX 39 AE3 SER B 320 LYS B 324 5 5
HELIX 40 AE4 PRO B 325 ARG B 350 1 26
HELIX 41 AE5 SER B 364 ILE B 376 1 13
HELIX 42 AE6 ILE B 376 VAL B 388 1 13
HELIX 43 AE7 ALA B 392 THR B 409 1 18
LINK NE2 HIS A 164 ZN ZN A 601 1555 1555 2.19
LINK NE2 HIS A 200 ZN ZN A 601 1555 1555 2.24
LINK OD2 ASP A 201 ZN ZN A 601 1555 1555 2.11
LINK OD1 ASP A 201 MG MG A 602 1555 1555 2.26
LINK OD1 ASP A 318 ZN ZN A 601 1555 1555 2.19
LINK ZN ZN A 601 O27 B6V A 603 1555 1555 2.18
LINK ZN ZN A 601 O HOH A 756 1555 1555 2.17
LINK MG MG A 602 O HOH A 755 1555 1555 2.23
LINK MG MG A 602 O HOH A 756 1555 1555 1.96
LINK MG MG A 602 O HOH A 772 1555 1555 2.20
LINK MG MG A 602 O HOH A 799 1555 1555 2.02
LINK MG MG A 602 O HOH A 836 1555 1555 2.06
LINK NE2 HIS B 164 ZN ZN B 601 1555 1555 2.29
LINK NE2 HIS B 200 ZN ZN B 601 1555 1555 2.29
LINK OD2 ASP B 201 ZN ZN B 601 1555 1555 2.03
LINK OD1 ASP B 201 MG MG B 602 1555 1555 2.14
LINK OD1 ASP B 318 ZN ZN B 601 1555 1555 2.16
LINK ZN ZN B 601 O27 B6V B 603 1555 1555 2.22
LINK ZN ZN B 601 O HOH B 759 1555 1555 2.01
LINK MG MG B 602 O HOH B 714 1555 1555 2.35
LINK MG MG B 602 O HOH B 722 1555 1555 2.29
LINK MG MG B 602 O HOH B 759 1555 1555 2.05
LINK MG MG B 602 O HOH B 766 1555 1555 2.06
LINK MG MG B 602 O HOH B 780 1555 1555 2.38
CISPEP 1 HIS A 389 PRO A 390 0 5.38
CISPEP 2 HIS B 389 PRO B 390 0 28.88
CRYST1 58.057 80.416 162.918 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017224 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012435 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006138 0.00000