HEADER PLANT PROTEIN 29-MAR-22 7XDW TITLE CRYSTAL STRUCTURE OF A RECEPTOR LIKE KINASE FROM ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-LIKE PROTEIN KINASE FERONIA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN SIRENE; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: FER, AAK1, SIR, SRN, AT3G51550, F26O13.190; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RECEPTOR-LIKE KINASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Q.KONG,Z.H.MING REVDAT 3 29-NOV-23 7XDW 1 REMARK REVDAT 2 18-OCT-23 7XDW 1 JRNL REVDAT 1 29-MAR-23 7XDW 0 JRNL AUTH Y.KONG,J.CHEN,L.JIANG,H.CHEN,Y.SHEN,L.WANG,Y.YAN,H.ZHOU, JRNL AUTH 2 H.ZHENG,F.YU,Z.MING JRNL TITL STRUCTURAL AND BIOCHEMICAL BASIS OF ARABIDOPSIS FERONIA JRNL TITL 2 RECEPTOR KINASE-MEDIATED EARLY SIGNALING INITIATION. JRNL REF PLANT COMMUN. V. 4 00559 2023 JRNL REFN ISSN 2590-3462 JRNL PMID 36774537 JRNL DOI 10.1016/J.XPLC.2023.100559 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 42809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7120 - 4.7486 0.98 3000 177 0.1640 0.1640 REMARK 3 2 4.7486 - 3.7692 0.99 3026 138 0.1561 0.1910 REMARK 3 3 3.7692 - 3.2928 0.99 2985 147 0.1735 0.1880 REMARK 3 4 3.2928 - 2.9918 0.99 3019 125 0.1923 0.2298 REMARK 3 5 2.9918 - 2.7773 0.99 2956 201 0.1921 0.2108 REMARK 3 6 2.7773 - 2.6136 0.99 3011 130 0.1942 0.1958 REMARK 3 7 2.6136 - 2.4827 1.00 2947 158 0.1928 0.2718 REMARK 3 8 2.4827 - 2.3746 0.99 2970 169 0.1993 0.2532 REMARK 3 9 2.3746 - 2.2832 1.00 3019 155 0.1961 0.2277 REMARK 3 10 2.2832 - 2.2044 0.54 1607 81 0.2016 0.2815 REMARK 3 11 2.2044 - 2.1355 1.00 2991 158 0.2058 0.2313 REMARK 3 12 2.1355 - 2.0744 0.98 2824 148 0.2059 0.2237 REMARK 3 13 2.0744 - 2.0198 0.93 1199 71 0.2328 0.2764 REMARK 3 14 2.0198 - 1.9705 1.00 3006 148 0.2383 0.2940 REMARK 3 15 1.9705 - 1.9260 0.72 2142 101 0.2889 0.3209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.7122 4.4117 16.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1804 REMARK 3 T33: 0.1666 T12: -0.0056 REMARK 3 T13: 0.0009 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8724 L22: 0.5734 REMARK 3 L33: 0.2120 L12: 0.4051 REMARK 3 L13: -0.0197 L23: 0.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.0805 S13: -0.0005 REMARK 3 S21: -0.0713 S22: 0.0536 S23: -0.0169 REMARK 3 S31: 0.0059 S32: 0.0015 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 522 THROUGH 815 OR REMARK 3 RESID 901 THROUGH 1001)) REMARK 3 SELECTION : (CHAIN B AND (RESID 522 THROUGH 815 OR REMARK 3 RESID 901 THROUGH 1001)) REMARK 3 ATOM PAIRS NUMBER : 1720 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.926 REMARK 200 RESOLUTION RANGE LOW (A) : 61.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M POTASSIUM CHLORIDE, 0.01M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, 0.05M TRIS HYDROCHLORIDE PH 8.5, REMARK 280 30% V/V POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.58150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 504 REMARK 465 GLY A 505 REMARK 465 SER A 506 REMARK 465 SER A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 SER A 514 REMARK 465 GLN A 515 REMARK 465 GLY A 516 REMARK 465 SER A 517 REMARK 465 SER A 518 REMARK 465 ASN A 519 REMARK 465 LEU A 520 REMARK 465 PRO A 687 REMARK 465 THR A 688 REMARK 465 LEU A 689 REMARK 465 ASP A 690 REMARK 465 HIS A 691 REMARK 465 THR A 692 REMARK 465 HIS A 693 REMARK 465 VAL A 694 REMARK 465 SER A 695 REMARK 465 THR A 696 REMARK 465 VAL A 697 REMARK 465 VAL A 698 REMARK 465 LYS A 699 REMARK 465 GLY A 700 REMARK 465 SER A 816 REMARK 465 MET B 504 REMARK 465 GLY B 505 REMARK 465 SER B 506 REMARK 465 SER B 507 REMARK 465 HIS B 508 REMARK 465 HIS B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 SER B 514 REMARK 465 GLN B 515 REMARK 465 GLY B 516 REMARK 465 SER B 517 REMARK 465 SER B 518 REMARK 465 ASN B 519 REMARK 465 LEU B 520 REMARK 465 CYS B 521 REMARK 465 PRO B 687 REMARK 465 THR B 688 REMARK 465 LEU B 689 REMARK 465 ASP B 690 REMARK 465 HIS B 691 REMARK 465 THR B 692 REMARK 465 HIS B 693 REMARK 465 VAL B 694 REMARK 465 SER B 695 REMARK 465 THR B 696 REMARK 465 VAL B 697 REMARK 465 VAL B 698 REMARK 465 LYS B 699 REMARK 465 GLY B 700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1073 O HOH A 1075 1.88 REMARK 500 O HOH B 1050 O HOH B 1085 1.96 REMARK 500 O HOH A 1054 O HOH A 1064 2.01 REMARK 500 NH1 ARG B 644 O HOH B 1001 2.05 REMARK 500 OD2 ASP A 679 O HOH A 1001 2.07 REMARK 500 OD1 ASP A 763 O HOH A 1002 2.09 REMARK 500 O GLU B 601 O HOH B 1002 2.09 REMARK 500 OE2 GLU A 808 O HOH A 1003 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 711 NZ LYS B 744 1655 1.29 REMARK 500 NH2 ARG A 711 CE LYS B 744 1655 1.65 REMARK 500 CZ ARG A 711 NZ LYS B 744 1655 1.78 REMARK 500 CD ARG A 711 NZ LYS B 744 1655 1.89 REMARK 500 NE2 GLN A 573 OE1 GLU B 572 1655 1.93 REMARK 500 NH2 ARG A 711 CD LYS B 744 1655 1.93 REMARK 500 NE ARG A 711 NZ LYS B 744 1655 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 572 CD GLU B 572 OE2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 654 CD - CE - NZ ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU A 715 CB - CG - CD1 ANGL. DEV. = -14.6 DEGREES REMARK 500 LEU A 715 CB - CG - CD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 LYS B 744 CA - CB - CG ANGL. DEV. = -18.5 DEGREES REMARK 500 LYS B 744 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 LYS B 744 CG - CD - CE ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 661 42.53 -146.99 REMARK 500 ARG A 711 -55.55 -122.31 REMARK 500 ASP B 661 44.79 -145.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1075 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 666 OD1 REMARK 620 2 ASP A 679 OD2 86.9 REMARK 620 3 ADP A 901 O2A 142.0 80.6 REMARK 620 4 HOH A1001 O 78.6 54.9 64.9 REMARK 620 N 1 2 3 DBREF 7XDW A 518 816 UNP Q9SCZ4 FERON_ARATH 518 816 DBREF 7XDW B 518 816 UNP Q9SCZ4 FERON_ARATH 518 816 SEQADV 7XDW MET A 504 UNP Q9SCZ4 INITIATING METHIONINE SEQADV 7XDW GLY A 505 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER A 506 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER A 507 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 508 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 509 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 510 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 511 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 512 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS A 513 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER A 514 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW GLN A 515 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW GLY A 516 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER A 517 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW ARG A 565 UNP Q9SCZ4 LYS 565 CONFLICT SEQADV 7XDW MET B 504 UNP Q9SCZ4 INITIATING METHIONINE SEQADV 7XDW GLY B 505 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER B 506 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER B 507 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 508 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 509 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 510 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 511 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 512 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW HIS B 513 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER B 514 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW GLN B 515 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW GLY B 516 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW SER B 517 UNP Q9SCZ4 EXPRESSION TAG SEQADV 7XDW ARG B 565 UNP Q9SCZ4 LYS 565 CONFLICT SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLY SEQRES 2 A 313 SER SER ASN LEU CYS ARG HIS PHE SER PHE ALA GLU ILE SEQRES 3 A 313 LYS ALA ALA THR LYS ASN PHE ASP GLU SER ARG VAL LEU SEQRES 4 A 313 GLY VAL GLY GLY PHE GLY LYS VAL TYR ARG GLY GLU ILE SEQRES 5 A 313 ASP GLY GLY THR THR LYS VAL ALA ILE ARG ARG GLY ASN SEQRES 6 A 313 PRO MET SER GLU GLN GLY VAL HIS GLU PHE GLN THR GLU SEQRES 7 A 313 ILE GLU MET LEU SER LYS LEU ARG HIS ARG HIS LEU VAL SEQRES 8 A 313 SER LEU ILE GLY TYR CYS GLU GLU ASN CYS GLU MET ILE SEQRES 9 A 313 LEU VAL TYR ASP TYR MET ALA HIS GLY THR MET ARG GLU SEQRES 10 A 313 HIS LEU TYR LYS THR GLN ASN PRO SER LEU PRO TRP LYS SEQRES 11 A 313 GLN ARG LEU GLU ILE CYS ILE GLY ALA ALA ARG GLY LEU SEQRES 12 A 313 HIS TYR LEU HIS THR GLY ALA LYS HIS THR ILE ILE HIS SEQRES 13 A 313 ARG ASP VAL LYS THR THR ASN ILE LEU LEU ASP GLU LYS SEQRES 14 A 313 TRP VAL ALA LYS VAL SER ASP PHE GLY LEU SER LYS THR SEQRES 15 A 313 GLY PRO THR LEU ASP HIS THR HIS VAL SER THR VAL VAL SEQRES 16 A 313 LYS GLY SER PHE GLY TYR LEU ASP PRO GLU TYR PHE ARG SEQRES 17 A 313 ARG GLN GLN LEU THR GLU LYS SER ASP VAL TYR SER PHE SEQRES 18 A 313 GLY VAL VAL LEU PHE GLU ALA LEU CYS ALA ARG PRO ALA SEQRES 19 A 313 LEU ASN PRO THR LEU ALA LYS GLU GLN VAL SER LEU ALA SEQRES 20 A 313 GLU TRP ALA PRO TYR CYS TYR LYS LYS GLY MET LEU ASP SEQRES 21 A 313 GLN ILE VAL ASP PRO TYR LEU LYS GLY LYS ILE THR PRO SEQRES 22 A 313 GLU CYS PHE LYS LYS PHE ALA GLU THR ALA MET LYS CYS SEQRES 23 A 313 VAL LEU ASP GLN GLY ILE GLU ARG PRO SER MET GLY ASP SEQRES 24 A 313 VAL LEU TRP ASN LEU GLU PHE ALA LEU GLN LEU GLN GLU SEQRES 25 A 313 SER SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLY SEQRES 2 B 313 SER SER ASN LEU CYS ARG HIS PHE SER PHE ALA GLU ILE SEQRES 3 B 313 LYS ALA ALA THR LYS ASN PHE ASP GLU SER ARG VAL LEU SEQRES 4 B 313 GLY VAL GLY GLY PHE GLY LYS VAL TYR ARG GLY GLU ILE SEQRES 5 B 313 ASP GLY GLY THR THR LYS VAL ALA ILE ARG ARG GLY ASN SEQRES 6 B 313 PRO MET SER GLU GLN GLY VAL HIS GLU PHE GLN THR GLU SEQRES 7 B 313 ILE GLU MET LEU SER LYS LEU ARG HIS ARG HIS LEU VAL SEQRES 8 B 313 SER LEU ILE GLY TYR CYS GLU GLU ASN CYS GLU MET ILE SEQRES 9 B 313 LEU VAL TYR ASP TYR MET ALA HIS GLY THR MET ARG GLU SEQRES 10 B 313 HIS LEU TYR LYS THR GLN ASN PRO SER LEU PRO TRP LYS SEQRES 11 B 313 GLN ARG LEU GLU ILE CYS ILE GLY ALA ALA ARG GLY LEU SEQRES 12 B 313 HIS TYR LEU HIS THR GLY ALA LYS HIS THR ILE ILE HIS SEQRES 13 B 313 ARG ASP VAL LYS THR THR ASN ILE LEU LEU ASP GLU LYS SEQRES 14 B 313 TRP VAL ALA LYS VAL SER ASP PHE GLY LEU SER LYS THR SEQRES 15 B 313 GLY PRO THR LEU ASP HIS THR HIS VAL SER THR VAL VAL SEQRES 16 B 313 LYS GLY SER PHE GLY TYR LEU ASP PRO GLU TYR PHE ARG SEQRES 17 B 313 ARG GLN GLN LEU THR GLU LYS SER ASP VAL TYR SER PHE SEQRES 18 B 313 GLY VAL VAL LEU PHE GLU ALA LEU CYS ALA ARG PRO ALA SEQRES 19 B 313 LEU ASN PRO THR LEU ALA LYS GLU GLN VAL SER LEU ALA SEQRES 20 B 313 GLU TRP ALA PRO TYR CYS TYR LYS LYS GLY MET LEU ASP SEQRES 21 B 313 GLN ILE VAL ASP PRO TYR LEU LYS GLY LYS ILE THR PRO SEQRES 22 B 313 GLU CYS PHE LYS LYS PHE ALA GLU THR ALA MET LYS CYS SEQRES 23 B 313 VAL LEU ASP GLN GLY ILE GLU ARG PRO SER MET GLY ASP SEQRES 24 B 313 VAL LEU TRP ASN LEU GLU PHE ALA LEU GLN LEU GLN GLU SEQRES 25 B 313 SER HET ADP A 901 27 HET MG A 902 1 HET ADP B 901 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG MG 2+ FORMUL 6 HOH *163(H2 O) HELIX 1 AA1 SER A 525 LYS A 534 1 10 HELIX 2 AA2 ASP A 537 SER A 539 5 3 HELIX 3 AA3 SER A 571 SER A 586 1 16 HELIX 4 AA4 GLU A 601 GLU A 605 5 5 HELIX 5 AA5 MET A 618 LEU A 622 5 5 HELIX 6 AA6 PRO A 631 GLY A 652 1 22 HELIX 7 AA7 ASP A 679 SER A 683 5 5 HELIX 8 AA8 SER A 701 LEU A 705 5 5 HELIX 9 AA9 ASP A 706 PRO A 707 5 2 HELIX 10 AB1 GLU A 708 GLN A 713 1 6 HELIX 11 AB2 THR A 716 ALA A 734 1 19 HELIX 12 AB3 ALA A 743 VAL A 747 5 5 HELIX 13 AB4 SER A 748 LYS A 759 1 12 HELIX 14 AB5 MET A 761 ILE A 765 5 5 HELIX 15 AB6 ASP A 767 LYS A 771 5 5 HELIX 16 AB7 THR A 775 VAL A 790 1 16 HELIX 17 AB8 GLN A 793 ARG A 797 5 5 HELIX 18 AB9 SER A 799 GLU A 815 1 17 HELIX 19 AC1 SER B 525 THR B 533 1 9 HELIX 20 AC2 ASP B 537 SER B 539 5 3 HELIX 21 AC3 ASP B 556 THR B 559 5 4 HELIX 22 AC4 SER B 571 SER B 586 1 16 HELIX 23 AC5 MET B 618 LEU B 622 5 5 HELIX 24 AC6 PRO B 631 GLY B 652 1 22 HELIX 25 AC7 ASP B 679 SER B 683 5 5 HELIX 26 AC8 GLU B 708 GLN B 713 1 6 HELIX 27 AC9 GLU B 717 ALA B 734 1 18 HELIX 28 AD1 ALA B 743 VAL B 747 5 5 HELIX 29 AD2 SER B 748 LYS B 759 1 12 HELIX 30 AD3 MET B 761 ILE B 765 5 5 HELIX 31 AD4 ASP B 767 LYS B 771 5 5 HELIX 32 AD5 THR B 775 VAL B 790 1 16 HELIX 33 AD6 GLN B 793 ARG B 797 5 5 HELIX 34 AD7 SER B 799 GLU B 815 1 17 SHEET 1 AA1 6 ARG A 522 HIS A 523 0 SHEET 2 AA1 6 LEU A 596 CYS A 600 1 O TYR A 599 N ARG A 522 SHEET 3 AA1 6 MET A 606 ASP A 611 -1 O VAL A 609 N GLY A 598 SHEET 4 AA1 6 THR A 560 GLY A 567 -1 N GLY A 567 O MET A 606 SHEET 5 AA1 6 LYS A 549 ILE A 555 -1 N GLY A 553 O VAL A 562 SHEET 6 AA1 6 VAL A 541 VAL A 544 -1 N LEU A 542 O VAL A 550 SHEET 1 AA2 2 ILE A 667 LEU A 669 0 SHEET 2 AA2 2 ALA A 675 VAL A 677 -1 O LYS A 676 N LEU A 668 SHEET 1 AA3 5 VAL B 541 VAL B 544 0 SHEET 2 AA3 5 LYS B 549 ILE B 555 -1 O VAL B 550 N LEU B 542 SHEET 3 AA3 5 THR B 560 ARG B 566 -1 O VAL B 562 N GLY B 553 SHEET 4 AA3 5 ILE B 607 ASP B 611 -1 O TYR B 610 N ALA B 563 SHEET 5 AA3 5 LEU B 596 CYS B 600 -1 N GLY B 598 O VAL B 609 SHEET 1 AA4 2 ILE B 657 ILE B 658 0 SHEET 2 AA4 2 LYS B 684 THR B 685 -1 O LYS B 684 N ILE B 658 SHEET 1 AA5 2 ILE B 667 LEU B 669 0 SHEET 2 AA5 2 ALA B 675 VAL B 677 -1 O LYS B 676 N LEU B 668 LINK OD1 ASN A 666 MG MG A 902 1555 1555 2.32 LINK OD2 ASP A 679 MG MG A 902 1555 1555 2.21 LINK O2A ADP A 901 MG MG A 902 1555 1555 1.96 LINK MG MG A 902 O HOH A1001 1555 1555 2.27 CRYST1 61.805 83.163 62.048 90.00 93.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016180 0.000000 0.000888 0.00000 SCALE2 0.000000 0.012025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016141 0.00000