HEADER BIOSYNTHETIC PROTEIN 31-MAR-22 7XEJ TITLE SUFS WITH D-CYSTEINE FOR 5 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CYSTEINE DESULFURASE, INHIBITOR, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMIURA,T.FUJISHIRO REVDAT 2 29-NOV-23 7XEJ 1 REMARK REVDAT 1 05-APR-23 7XEJ 0 JRNL AUTH R.NAKAMURA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL X-RAY CRYSTALLOGRAPHIC SNAPSHOTS OF THE THIOAZOLIDINE JRNL TITL 2 FORMATION UPON THE PLP DURING INHIBITION OF SUFS BY JRNL TITL 3 D-CYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3384 ; 0.023 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4572 ; 2.629 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 6.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;34.354 ;23.609 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;15.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.449 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.226 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2528 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0994 -7.8146 -15.7349 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0734 REMARK 3 T33: 0.0692 T12: -0.0223 REMARK 3 T13: 0.0005 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 0.8012 REMARK 3 L33: 0.3925 L12: 0.1441 REMARK 3 L13: -0.0098 L23: -0.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.0239 S13: 0.0072 REMARK 3 S21: -0.0048 S22: 0.0164 S23: 0.0369 REMARK 3 S31: 0.0196 S32: -0.1254 S33: -0.0409 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4451 20.5072 -18.0835 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1865 REMARK 3 T33: 0.0376 T12: 0.0595 REMARK 3 T13: 0.0039 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.1600 L22: 5.8021 REMARK 3 L33: 0.5305 L12: 0.4542 REMARK 3 L13: -0.1218 L23: -1.7513 REMARK 3 S TENSOR REMARK 3 S11: 0.1178 S12: 0.1318 S13: -0.0292 REMARK 3 S21: 0.3771 S22: -0.1829 S23: -0.2046 REMARK 3 S31: -0.1033 S32: 0.0744 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3343 -10.6848 -9.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0435 REMARK 3 T33: 0.0690 T12: -0.0197 REMARK 3 T13: -0.0335 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.0939 L22: 0.3403 REMARK 3 L33: 0.2767 L12: 0.0563 REMARK 3 L13: -0.1009 L23: -0.1379 REMARK 3 S TENSOR REMARK 3 S11: 0.0140 S12: -0.0387 S13: -0.0093 REMARK 3 S21: 0.0581 S22: -0.0530 S23: -0.0706 REMARK 3 S31: 0.0152 S32: 0.0110 S33: 0.0390 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 413 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3287 -40.7549 -21.0761 REMARK 3 T TENSOR REMARK 3 T11: 0.2250 T22: 0.0473 REMARK 3 T33: 0.0690 T12: -0.0996 REMARK 3 T13: 0.0052 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.7276 L22: 2.5395 REMARK 3 L33: 2.2227 L12: -0.8795 REMARK 3 L13: -1.8819 L23: 1.5580 REMARK 3 S TENSOR REMARK 3 S11: -0.2234 S12: 0.1415 S13: -0.1999 REMARK 3 S21: -0.1180 S22: 0.0218 S23: 0.0299 REMARK 3 S31: 0.1687 S32: -0.1233 S33: 0.2016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7XEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66778 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 46.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.15 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.39 REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 50 MM LITHIUM SULFATE, REMARK 280 50% (V/V) PEG200, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.26667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.26667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.13333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 53 CE1 HIS A 53 NE2 0.118 REMARK 500 GLU A 183 CD GLU A 183 OE1 0.097 REMARK 500 GLU A 248 CB GLU A 248 CG -0.123 REMARK 500 GLU A 248 CD GLU A 248 OE1 0.090 REMARK 500 GLU A 248 CD GLU A 248 OE2 -0.097 REMARK 500 GLU A 272 CD GLU A 272 OE1 0.078 REMARK 500 SER A 300 CA SER A 300 CB 0.101 REMARK 500 GLU A 393 CD GLU A 393 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 CG - CD - NE ANGL. DEV. = 13.9 DEGREES REMARK 500 LYS A 90 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS A 90 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 90 CG - CD - CE ANGL. DEV. = -18.3 DEGREES REMARK 500 VAL A 231 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 VAL A 231 CA - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 248 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 THR A 346 CA - CB - OG1 ANGL. DEV. = -18.7 DEGREES REMARK 500 TYR A 380 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 19.99 -140.92 REMARK 500 HIS A 53 166.25 78.42 REMARK 500 ILE A 116 -159.26 -127.02 REMARK 500 ILE A 125 -59.44 -125.78 REMARK 500 GLU A 252 -27.66 80.68 REMARK 500 ALA A 329 -177.03 -68.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XEJ A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 7XEJ MET A -2 UNP O32164 INITIATING METHIONINE SEQADV 7XEJ GLY A -1 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 0 UNP O32164 EXPRESSION TAG SEQADV 7XEJ VAL A 407 UNP O32164 EXPRESSION TAG SEQADV 7XEJ ASP A 408 UNP O32164 EXPRESSION TAG SEQADV 7XEJ LEU A 409 UNP O32164 EXPRESSION TAG SEQADV 7XEJ GLU A 410 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 414 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 415 UNP O32164 EXPRESSION TAG SEQADV 7XEJ HIS A 416 UNP O32164 EXPRESSION TAG SEQRES 1 A 419 MET GLY HIS MET ASN ILE THR ASP ILE ARG GLU GLN PHE SEQRES 2 A 419 PRO ILE LEU HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL SEQRES 3 A 419 TYR LEU ASP SER ALA ALA THR SER GLN LYS PRO ARG ALA SEQRES 4 A 419 VAL ILE GLU THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SEQRES 5 A 419 SER ASN VAL HIS ARG GLY VAL HIS THR LEU GLY THR ARG SEQRES 6 A 419 ALA THR ASP GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG SEQRES 7 A 419 LYS PHE ILE ASN ALA LYS SER MET ALA GLU ILE ILE PHE SEQRES 8 A 419 THR LYS GLY THR THR THR SER LEU ASN MET VAL ALA LEU SEQRES 9 A 419 SER TYR ALA ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL SEQRES 10 A 419 VAL ILE THR TYR MET GLU HIS HIS ALA ASN ILE ILE PRO SEQRES 11 A 419 TRP GLN GLN ALA VAL LYS ALA THR GLY ALA THR LEU LYS SEQRES 12 A 419 TYR ILE PRO LEU GLN GLU ASP GLY THR ILE SER LEU GLU SEQRES 13 A 419 ASP VAL ARG GLU THR VAL THR SER ASN THR LYS ILE VAL SEQRES 14 A 419 ALA VAL SER HIS VAL SER ASN VAL LEU GLY THR VAL ASN SEQRES 15 A 419 PRO ILE LYS GLU MET ALA LYS ILE ALA HIS ASP ASN GLY SEQRES 16 A 419 ALA VAL ILE VAL VAL ASP GLY ALA GLN SER THR PRO HIS SEQRES 17 A 419 MET LYS ILE ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE SEQRES 18 A 419 ALA LEU SER SER HIS LYS MET CYS GLY PRO THR GLY VAL SEQRES 19 A 419 GLY VAL LEU TYR GLY LYS LYS ALA LEU LEU GLU ASN MET SEQRES 20 A 419 GLU PRO ALA GLU PHE GLY GLY GLU MET ILE ASP PHE VAL SEQRES 21 A 419 GLY LEU TYR GLU SER THR TRP LYS GLU LEU PRO TRP LYS SEQRES 22 A 419 PHE GLU ALA GLY THR PRO ILE ILE ALA GLY ALA ILE GLY SEQRES 23 A 419 LEU GLY ALA ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU SEQRES 24 A 419 ASP GLU ILE SER ARG HIS GLU HIS LYS LEU ALA ALA TYR SEQRES 25 A 419 ALA LEU GLU ARG PHE ARG GLN LEU ASP GLY VAL THR VAL SEQRES 26 A 419 TYR GLY PRO GLU GLU ARG ALA GLY LEU VAL THR PHE ASN SEQRES 27 A 419 LEU ASP ASP VAL HIS PRO HIS ASP VAL ALA THR VAL LEU SEQRES 28 A 419 ASP ALA GLU GLY ILE ALA VAL ARG ALA GLY HIS HIS CYS SEQRES 29 A 419 ALA GLN PRO LEU MET LYS TRP LEU ASP VAL THR ALA THR SEQRES 30 A 419 ALA ARG ALA SER PHE TYR LEU TYR ASN THR GLU GLU GLU SEQRES 31 A 419 ILE ASP LYS LEU VAL GLU ALA LEU GLN LYS THR LYS GLU SEQRES 32 A 419 TYR PHE THR ASN VAL PHE VAL ASP LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS HET 9PV A 501 22 HET EDO A 502 4 HET PEG A 503 7 HET PEG A 504 7 HET PEG A 505 7 HET PEG A 506 7 HET PEG A 507 7 HET PEG A 508 7 HET PEG A 509 7 HET PGE A 510 10 HETNAM 9PV (2~{S})-2-[(~{E})-[2-METHYL-3-OXIDANYL-5- HETNAM 2 9PV (PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]-3- HETNAM 3 9PV SULFANYL-PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9PV C11 H15 N2 O7 P S FORMUL 3 EDO C2 H6 O2 FORMUL 4 PEG 7(C4 H10 O3) FORMUL 11 PGE C6 H14 O4 FORMUL 12 HOH *384(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ASN A 79 1 23 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 HIS A 121 ASN A 124 5 4 HELIX 8 AA8 ILE A 125 GLY A 136 1 12 HELIX 9 AA9 SER A 151 VAL A 159 1 9 HELIX 10 AB1 PRO A 180 ASN A 191 1 12 HELIX 11 AB2 ASP A 209 ASP A 214 1 6 HELIX 12 AB3 HIS A 223 MET A 225 5 3 HELIX 13 AB4 LYS A 237 MET A 244 1 8 HELIX 14 AB5 PRO A 268 GLU A 272 5 5 HELIX 15 AB6 ILE A 277 GLY A 295 1 19 HELIX 16 AB7 GLY A 295 GLN A 316 1 22 HELIX 17 AB8 HIS A 340 GLU A 351 1 12 HELIX 18 AB9 ALA A 362 ASP A 370 1 9 HELIX 19 AC1 THR A 384 HIS A 413 1 30 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O PHE A 217 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 166 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N VAL A 115 O ILE A 165 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O ILE A 142 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 VAL A 322 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O ASN A 335 N THR A 321 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N ARG A 356 O ARG A 376 CISPEP 1 LEU A 267 PRO A 268 0 0.23 CRYST1 92.900 92.900 129.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010764 0.006215 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007728 0.00000