HEADER BIOSYNTHETIC PROTEIN 31-MAR-22 7XEP TITLE SUFS WITH L-PROPARGYLGLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CYSTEINE DESULFURASE, INHIBITOR, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMURA,T.FUJISHIRO REVDAT 2 29-NOV-23 7XEP 1 REMARK REVDAT 1 05-APR-23 7XEP 0 JRNL AUTH R.NAKAMURA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL INHIBITION MECHANISM OF SUFS BY L-PROPARGYLGLYCINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3177 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3383 ; 0.027 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4579 ; 2.564 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 6.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;34.913 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;14.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.222 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2529 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -38.0824 52.7880 -37.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.1483 REMARK 3 T33: 0.1360 T12: 0.0086 REMARK 3 T13: 0.0087 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.6743 L22: 0.0904 REMARK 3 L33: 0.4084 L12: 0.2241 REMARK 3 L13: -0.2220 L23: -0.1099 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0503 S13: 0.0321 REMARK 3 S21: -0.0086 S22: 0.0258 S23: 0.0150 REMARK 3 S31: -0.1023 S32: -0.0652 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): -30.9315 33.0390 -31.2629 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.1463 REMARK 3 T33: 0.1471 T12: -0.0057 REMARK 3 T13: 0.0096 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.3493 L22: 0.1388 REMARK 3 L33: 0.3078 L12: 0.1204 REMARK 3 L13: -0.1710 L23: -0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.1051 S13: -0.0859 REMARK 3 S21: 0.0134 S22: -0.0075 S23: -0.0372 REMARK 3 S31: 0.0226 S32: -0.0020 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 385 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): -62.8516 35.0220 -38.4926 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.3186 REMARK 3 T33: 0.1637 T12: -0.0269 REMARK 3 T13: 0.0350 T23: 0.0657 REMARK 3 L TENSOR REMARK 3 L11: 1.4890 L22: 2.9027 REMARK 3 L33: 1.9835 L12: 0.9969 REMARK 3 L13: -0.0016 L23: 2.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: 0.2273 S13: -0.0002 REMARK 3 S21: 0.0067 S22: -0.0826 S23: 0.1706 REMARK 3 S31: 0.0029 S32: -0.2246 S33: 0.1135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7XEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 47.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.31 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.35 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 50 MM LITHIUM SULFATE, REMARK 280 50% (V/V) PEG200, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.83333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.66667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.66667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -87.66667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 VAL A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 62 CD ARG A 62 NE 0.109 REMARK 500 GLU A 68 CD GLU A 68 OE2 0.106 REMARK 500 GLU A 120 CD GLU A 120 OE2 0.068 REMARK 500 GLU A 183 CD GLU A 183 OE1 0.110 REMARK 500 GLU A 248 CD GLU A 248 OE2 -0.113 REMARK 500 GLU A 252 CD GLU A 252 OE1 0.069 REMARK 500 GLU A 252 CD GLU A 252 OE2 0.070 REMARK 500 GLU A 266 CD GLU A 266 OE1 0.110 REMARK 500 GLU A 298 CD GLU A 298 OE1 0.071 REMARK 500 GLU A 312 CD GLU A 312 OE1 0.072 REMARK 500 GLU A 386 CD GLU A 386 OE1 0.077 REMARK 500 GLU A 393 CD GLU A 393 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 24 CD1 - CE1 - CZ ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 LYS A 90 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 301 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 THR A 346 CA - CB - OG1 ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 68.81 -100.75 REMARK 500 TYR A 48 20.85 -141.95 REMARK 500 HIS A 53 153.04 169.25 REMARK 500 VAL A 56 -166.26 -126.88 REMARK 500 ILE A 116 -160.61 -127.36 REMARK 500 ILE A 125 -54.07 -128.10 REMARK 500 GLU A 252 -30.31 79.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XEP A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 7XEP MET A -2 UNP O32164 INITIATING METHIONINE SEQADV 7XEP GLY A -1 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 0 UNP O32164 EXPRESSION TAG SEQADV 7XEP VAL A 407 UNP O32164 EXPRESSION TAG SEQADV 7XEP ASP A 408 UNP O32164 EXPRESSION TAG SEQADV 7XEP LEU A 409 UNP O32164 EXPRESSION TAG SEQADV 7XEP GLU A 410 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 414 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 415 UNP O32164 EXPRESSION TAG SEQADV 7XEP HIS A 416 UNP O32164 EXPRESSION TAG SEQRES 1 A 419 MET GLY HIS MET ASN ILE THR ASP ILE ARG GLU GLN PHE SEQRES 2 A 419 PRO ILE LEU HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL SEQRES 3 A 419 TYR LEU ASP SER ALA ALA THR SER GLN LYS PRO ARG ALA SEQRES 4 A 419 VAL ILE GLU THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SEQRES 5 A 419 SER ASN VAL HIS ARG GLY VAL HIS THR LEU GLY THR ARG SEQRES 6 A 419 ALA THR ASP GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG SEQRES 7 A 419 LYS PHE ILE ASN ALA LYS SER MET ALA GLU ILE ILE PHE SEQRES 8 A 419 THR LYS GLY THR THR THR SER LEU ASN MET VAL ALA LEU SEQRES 9 A 419 SER TYR ALA ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL SEQRES 10 A 419 VAL ILE THR TYR MET GLU HIS HIS ALA ASN ILE ILE PRO SEQRES 11 A 419 TRP GLN GLN ALA VAL LYS ALA THR GLY ALA THR LEU LYS SEQRES 12 A 419 TYR ILE PRO LEU GLN GLU ASP GLY THR ILE SER LEU GLU SEQRES 13 A 419 ASP VAL ARG GLU THR VAL THR SER ASN THR LYS ILE VAL SEQRES 14 A 419 ALA VAL SER HIS VAL SER ASN VAL LEU GLY THR VAL ASN SEQRES 15 A 419 PRO ILE LYS GLU MET ALA LYS ILE ALA HIS ASP ASN GLY SEQRES 16 A 419 ALA VAL ILE VAL VAL ASP GLY ALA GLN SER THR PRO HIS SEQRES 17 A 419 MET LYS ILE ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE SEQRES 18 A 419 ALA LEU SER SER HIS LYS MET CYS GLY PRO THR GLY VAL SEQRES 19 A 419 GLY VAL LEU TYR GLY LYS LYS ALA LEU LEU GLU ASN MET SEQRES 20 A 419 GLU PRO ALA GLU PHE GLY GLY GLU MET ILE ASP PHE VAL SEQRES 21 A 419 GLY LEU TYR GLU SER THR TRP LYS GLU LEU PRO TRP LYS SEQRES 22 A 419 PHE GLU ALA GLY THR PRO ILE ILE ALA GLY ALA ILE GLY SEQRES 23 A 419 LEU GLY ALA ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU SEQRES 24 A 419 ASP GLU ILE SER ARG HIS GLU HIS LYS LEU ALA ALA TYR SEQRES 25 A 419 ALA LEU GLU ARG PHE ARG GLN LEU ASP GLY VAL THR VAL SEQRES 26 A 419 TYR GLY PRO GLU GLU ARG ALA GLY LEU VAL THR PHE ASN SEQRES 27 A 419 LEU ASP ASP VAL HIS PRO HIS ASP VAL ALA THR VAL LEU SEQRES 28 A 419 ASP ALA GLU GLY ILE ALA VAL ARG ALA GLY HIS HIS CYS SEQRES 29 A 419 ALA GLN PRO LEU MET LYS TRP LEU ASP VAL THR ALA THR SEQRES 30 A 419 ALA ARG ALA SER PHE TYR LEU TYR ASN THR GLU GLU GLU SEQRES 31 A 419 ILE ASP LYS LEU VAL GLU ALA LEU GLN LYS THR LYS GLU SEQRES 32 A 419 TYR PHE THR ASN VAL PHE VAL ASP LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS HET PEG A 501 7 HET PEG A 502 7 HET PEG A 503 7 HET EIL A 504 23 HET PEG A 505 7 HET PEG A 506 7 HET PEG A 507 7 HET EDO A 508 4 HET PEG A 509 7 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EIL [6-METHYL-4-[[(5-METHYL-2-OXIDANYLIDENE-FURAN-3- HETNAM 2 EIL YLIDENE)AMINO]METHYL]-5-OXIDANYL-PYRIDIN-3-YL]METHYL HETNAM 3 EIL DIHYDROGEN PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEG 7(C4 H10 O3) FORMUL 5 EIL C13 H15 N2 O7 P FORMUL 9 EDO 4(C2 H6 O2) FORMUL 14 HOH *335(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ASN A 79 1 23 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 TYR A 103 LEU A 108 1 6 HELIX 8 AA8 HIS A 121 ASN A 124 5 4 HELIX 9 AA9 ILE A 125 GLY A 136 1 12 HELIX 10 AB1 SER A 151 VAL A 159 1 9 HELIX 11 AB2 PRO A 180 ASN A 191 1 12 HELIX 12 AB3 ASP A 209 ASP A 214 1 6 HELIX 13 AB4 HIS A 223 MET A 225 5 3 HELIX 14 AB5 LYS A 237 MET A 244 1 8 HELIX 15 AB6 PRO A 268 GLU A 272 5 5 HELIX 16 AB7 ILE A 277 GLY A 295 1 19 HELIX 17 AB8 GLY A 295 ARG A 315 1 21 HELIX 18 AB9 HIS A 340 ALA A 350 1 11 HELIX 19 AC1 ALA A 362 ASP A 370 1 9 HELIX 20 AC2 THR A 384 PHE A 406 1 23 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O PHE A 217 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 166 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N VAL A 115 O ILE A 165 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O ILE A 142 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 VAL A 322 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O ASN A 335 N THR A 321 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N GLY A 358 O THR A 374 CISPEP 1 LEU A 267 PRO A 268 0 -0.94 CRYST1 94.100 94.100 131.500 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010627 0.006135 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007605 0.00000