HEADER LYASE 02-APR-22 7XFS TITLE MUCP PDZ1 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZINC METALLOPROTEASE PA3649; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ1 DOMAIN; COMPND 5 SYNONYM: MUCP; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: PA3649; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS MUCP, ALGINATE BIOSYNTHESIS, PSEUDOMONAS AERUGINOSA PAO1, CRYSTAL KEYWDS 2 STRUCTURE., LYASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LOU,S.LI,Q.ZHANG,M.BARTLAM REVDAT 2 29-NOV-23 7XFS 1 REMARK REVDAT 1 05-APR-23 7XFS 0 JRNL AUTH X.LOU,S.LI,Q.ZHANG,M.BARTLAM JRNL TITL MUCP PDZ1 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 75011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4700 - 2.5500 1.00 5845 160 0.1567 0.1904 REMARK 3 2 2.5500 - 2.0300 1.00 5603 153 0.1452 0.1495 REMARK 3 3 2.0300 - 1.7700 1.00 5538 152 0.1411 0.1603 REMARK 3 4 1.7700 - 1.6100 1.00 5536 151 0.1385 0.1562 REMARK 3 5 1.6100 - 1.4900 1.00 5481 151 0.1312 0.1470 REMARK 3 6 1.4900 - 1.4000 1.00 5487 150 0.1441 0.1708 REMARK 3 7 1.4000 - 1.3300 0.99 5429 149 0.1503 0.1943 REMARK 3 8 1.3300 - 1.2800 1.00 5441 148 0.1418 0.1815 REMARK 3 9 1.2800 - 1.2300 0.99 5412 148 0.1361 0.1622 REMARK 3 10 1.2300 - 1.1900 0.99 5376 147 0.1363 0.1578 REMARK 3 11 1.1900 - 1.1500 0.97 5294 145 0.1553 0.1568 REMARK 3 12 1.1500 - 1.1200 0.89 4809 132 0.2054 0.2316 REMARK 3 13 1.1200 - 1.0900 0.79 4284 117 0.2719 0.2416 REMARK 3 14 1.0900 - 1.0600 0.64 3477 96 0.3479 0.3746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.122 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1468 REMARK 3 ANGLE : 0.942 2002 REMARK 3 CHIRALITY : 0.074 224 REMARK 3 PLANARITY : 0.010 272 REMARK 3 DIHEDRAL : 5.156 206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ID1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 300, 0.1M SODIUM ARSENATE PH REMARK 280 6.5, 0.2M CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 17.32000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.12250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 17.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 7XFS A 126 220 UNP Q9HXY3 Y3649_PSEAE 126 220 DBREF 7XFS B 126 220 UNP Q9HXY3 Y3649_PSEAE 126 220 SEQADV 7XFS SER A 125 UNP Q9HXY3 EXPRESSION TAG SEQADV 7XFS SER B 125 UNP Q9HXY3 EXPRESSION TAG SEQRES 1 A 96 SER VAL ARG PRO VAL ILE GLY SER VAL ALA PRO GLU SER SEQRES 2 A 96 LEU ALA ALA GLN ALA GLY LEU GLU ALA GLY GLN GLU LEU SEQRES 3 A 96 LEU ALA VAL ASP GLY GLU PRO VAL THR GLY TRP ASN GLY SEQRES 4 A 96 VAL ASN LEU GLN LEU VAL ARG ARG LEU GLY GLU SER GLY SEQRES 5 A 96 THR LEU GLU VAL ARG VAL GLN GLU LYS GLY SER ASN VAL SEQRES 6 A 96 ASP SER THR HIS GLN VAL ARG LEU ASP GLY TRP LEU LYS SEQRES 7 A 96 GLY GLU ASP ASN PRO ASP PRO ILE ALA SER LEU GLY ILE SEQRES 8 A 96 ARG PRO TRP ARG PRO SEQRES 1 B 96 SER VAL ARG PRO VAL ILE GLY SER VAL ALA PRO GLU SER SEQRES 2 B 96 LEU ALA ALA GLN ALA GLY LEU GLU ALA GLY GLN GLU LEU SEQRES 3 B 96 LEU ALA VAL ASP GLY GLU PRO VAL THR GLY TRP ASN GLY SEQRES 4 B 96 VAL ASN LEU GLN LEU VAL ARG ARG LEU GLY GLU SER GLY SEQRES 5 B 96 THR LEU GLU VAL ARG VAL GLN GLU LYS GLY SER ASN VAL SEQRES 6 B 96 ASP SER THR HIS GLN VAL ARG LEU ASP GLY TRP LEU LYS SEQRES 7 B 96 GLY GLU ASP ASN PRO ASP PRO ILE ALA SER LEU GLY ILE SEQRES 8 B 96 ARG PRO TRP ARG PRO FORMUL 3 HOH *236(H2 O) HELIX 1 AA1 SER A 137 ALA A 142 1 6 HELIX 2 AA2 GLY A 160 ARG A 170 1 11 HELIX 3 AA3 ASP A 208 LEU A 213 1 6 HELIX 4 AA4 SER B 137 ALA B 142 1 6 HELIX 5 AA5 GLY B 160 ARG B 170 1 11 HELIX 6 AA6 ASP B 208 LEU B 213 1 6 SHEET 1 AA1 2 ILE A 130 VAL A 133 0 SHEET 2 AA1 2 ILE A 215 PRO A 217 -1 O ARG A 216 N GLY A 131 SHEET 1 AA2 4 GLU A 156 PRO A 157 0 SHEET 2 AA2 4 GLU A 149 VAL A 153 -1 N VAL A 153 O GLU A 156 SHEET 3 AA2 4 GLY A 176 GLN A 183 -1 O ARG A 181 N LEU A 151 SHEET 4 AA2 4 ASP A 190 LEU A 197 -1 O HIS A 193 N VAL A 180 SHEET 1 AA3 2 ILE B 130 VAL B 133 0 SHEET 2 AA3 2 ILE B 215 PRO B 217 -1 O ARG B 216 N GLY B 131 SHEET 1 AA4 4 GLU B 156 PRO B 157 0 SHEET 2 AA4 4 GLU B 149 VAL B 153 -1 N VAL B 153 O GLU B 156 SHEET 3 AA4 4 GLY B 176 GLN B 183 -1 O ARG B 181 N LEU B 151 SHEET 4 AA4 4 ASP B 190 LEU B 197 -1 O HIS B 193 N VAL B 180 CRYST1 34.640 49.466 100.245 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028868 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009976 0.00000