data_7XFV # _entry.id 7XFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7XFV pdb_00007xfv 10.2210/pdb7xfv/pdb WWPDB D_1300028720 ? ? BMRB 36482 ? 10.13018/BMR36482 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-03-15 2 'Structure model' 1 1 2023-03-22 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 2 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7XFV _pdbx_database_status.recvd_initial_deposition_date 2022-04-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2' _pdbx_database_related.db_id 36482 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email ccao@mail.sioc.ac.cn _pdbx_contact_author.name_first Chunyang _pdbx_contact_author.name_last Cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7865-8249 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.' 1 ? 'Lan, W.' 2 ? 'Wang, C.' 3 ? 'Cao, C.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CC _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chin.J.Chem. _citation.journal_id_ASTM CJOCEV _citation.journal_id_CSD 1122 _citation.journal_id_ISSN 1001-604X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 40 _citation.language ? _citation.page_first 2179 _citation.page_last 2187 _citation.title 'Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cjoc.202200260 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 ? primary 'Lan, W.' 2 ? primary 'Wang, C.' 3 ? primary 'Xue, H.' 4 ? primary 'Cao, C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*AP*TP*GP*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3') ; _entity.formula_weight 4441.875 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DG)(DA)(DG)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATGAGGGGCGGGGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DA n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DC n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DG n 1 14 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA ADE A . n A 1 2 DT 2 2 2 DT THY A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 DA 4 4 4 DA ADE A . n A 1 5 DG 5 5 5 DG GUA A . n A 1 6 DG 6 6 6 DG GUA A . n A 1 7 DG 7 7 7 DG GUA A . n A 1 8 DG 8 8 8 DG GUA A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DG 11 11 11 DG GUA A . n A 1 12 DG 12 12 12 DG GUA A . n A 1 13 DG 13 13 13 DG GUA A . n A 1 14 DT 14 14 14 DT THY A . n B 1 1 DA 1 15 15 DA ADE B . n B 1 2 DT 2 16 16 DT THY B . n B 1 3 DG 3 17 17 DG GUA B . n B 1 4 DA 4 18 18 DA ADE B . n B 1 5 DG 5 19 19 DG GUA B . n B 1 6 DG 6 20 20 DG GUA B . n B 1 7 DG 7 21 21 DG GUA B . n B 1 8 DG 8 22 22 DG GUA B . n B 1 9 DC 9 23 23 DC CYT B . n B 1 10 DG 10 24 24 DG GUA B . n B 1 11 DG 11 25 25 DG GUA B . n B 1 12 DG 12 26 26 DG GUA B . n B 1 13 DG 13 27 27 DG GUA B . n B 1 14 DT 14 28 28 DT THY B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7XFV _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7XFV _struct.title 'Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7XFV _struct_keywords.text 'angiogenesis, VEGFR-2, G-quadruplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7XFV _struct_ref.pdbx_db_accession 7XFV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7XFV A 1 ? 14 ? 7XFV 1 ? 14 ? 1 14 2 1 7XFV B 1 ? 14 ? 7XFV 15 ? 28 ? 15 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2220 ? 1 MORE -8 ? 1 'SSA (A^2)' 4290 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N3 ? ? ? 1_555 A DA 4 N6 ? ? A DA 1 A DA 4 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DA 4 N3 ? ? A DA 1 B DA 18 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 5 O6 ? ? A DG 3 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 5 N7 ? ? A DG 3 A DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 5 N2 ? ? A DG 3 B DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 5 N1 ? ? A DG 3 B DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DA 4 N3 ? ? ? 1_555 B DA 1 N6 ? ? A DA 4 B DA 15 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 5 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 5 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 6 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 6 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 7 B DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 7 B DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 8 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 8 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 6 O6 ? ? A DG 10 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 6 N7 ? ? A DG 10 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 7 O6 ? ? A DG 11 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 7 N7 ? ? A DG 11 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 8 O6 ? ? A DG 12 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 8 N7 ? ? A DG 12 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DA 1 N3 ? ? ? 1_555 B DA 4 N6 ? ? B DA 15 B DA 18 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog29 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 5 O6 ? ? B DG 17 B DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 5 N7 ? ? B DG 17 B DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 20 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 20 B DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 7 N1 ? ? ? 1_555 B DG 11 O6 ? ? B DG 21 B DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 7 N2 ? ? ? 1_555 B DG 11 N7 ? ? B DG 21 B DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 12 O6 ? ? B DG 22 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 12 N7 ? ? B DG 22 B DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.52 110.10 -6.58 1.00 N 2 1 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.65 110.10 -6.45 1.00 N 3 1 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.36 110.10 -6.74 1.00 N 4 2 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.50 110.10 -6.60 1.00 N 5 2 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.56 110.10 -6.54 1.00 N 6 2 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.35 110.10 -6.75 1.00 N 7 3 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.51 110.10 -6.59 1.00 N 8 3 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.77 110.10 -6.33 1.00 N 9 3 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.35 110.10 -6.75 1.00 N 10 4 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.56 110.10 -6.54 1.00 N 11 4 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.69 110.10 -6.41 1.00 N 12 4 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.25 110.10 -6.85 1.00 N 13 5 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.61 110.10 -6.49 1.00 N 14 5 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.59 110.10 -6.51 1.00 N 15 5 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.35 110.10 -6.75 1.00 N 16 6 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.52 110.10 -6.58 1.00 N 17 6 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.76 110.10 -6.34 1.00 N 18 6 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.35 110.10 -6.75 1.00 N 19 7 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.61 110.10 -6.49 1.00 N 20 7 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.65 110.10 -6.45 1.00 N 21 7 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.36 110.10 -6.74 1.00 N 22 8 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.60 110.10 -6.50 1.00 N 23 8 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.65 110.10 -6.45 1.00 N 24 8 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.31 110.10 -6.79 1.00 N 25 9 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.66 110.10 -6.44 1.00 N 26 9 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.70 110.10 -6.40 1.00 N 27 9 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.41 110.10 -6.69 1.00 N 28 10 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 109.81 106.80 3.01 0.50 N 29 10 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.55 110.10 -6.55 1.00 N 30 10 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.72 110.10 -6.38 1.00 N 31 10 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.32 110.10 -6.78 1.00 N 32 11 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.57 110.10 -6.53 1.00 N 33 11 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.63 110.10 -6.47 1.00 N 34 11 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.36 110.10 -6.74 1.00 N 35 12 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 109.80 106.80 3.00 0.50 N 36 12 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.52 110.10 -6.58 1.00 N 37 12 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.64 110.10 -6.46 1.00 N 38 12 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.28 110.10 -6.82 1.00 N 39 13 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.56 110.10 -6.54 1.00 N 40 13 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.79 110.10 -6.31 1.00 N 41 13 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.29 110.10 -6.81 1.00 N 42 14 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.55 110.10 -6.55 1.00 N 43 14 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.63 110.10 -6.47 1.00 N 44 14 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.37 110.10 -6.73 1.00 N 45 15 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 109.90 106.80 3.10 0.50 N 46 15 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.55 110.10 -6.55 1.00 N 47 15 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.43 110.10 -6.67 1.00 N 48 15 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.33 110.10 -6.77 1.00 N 49 16 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.60 110.10 -6.50 1.00 N 50 16 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.64 110.10 -6.46 1.00 N 51 16 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.33 110.10 -6.77 1.00 N 52 17 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.58 110.10 -6.52 1.00 N 53 17 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.70 110.10 -6.40 1.00 N 54 17 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.37 110.10 -6.73 1.00 N 55 18 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.52 110.10 -6.58 1.00 N 56 18 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.55 110.10 -6.55 1.00 N 57 18 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.35 110.10 -6.75 1.00 N 58 19 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.57 110.10 -6.53 1.00 N 59 19 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.72 110.10 -6.38 1.00 N 60 19 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.25 110.10 -6.85 1.00 N 61 20 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.55 110.10 -6.55 1.00 N 62 20 "C1'" B DT 16 ? ? "O4'" B DT 16 ? ? "C4'" B DT 16 ? ? 103.87 110.10 -6.23 1.00 N 63 20 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 103.30 110.10 -6.80 1.00 N # _pdbx_nmr_ensemble.entry_id 7XFV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7XFV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.0 mM VGFER-14, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label none _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component VGFER-14 _pdbx_nmr_exptl_sample.concentration 2.0 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling none # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D 1H-1H TOCSY' 2 isotropic 3 1 1 '2D DQF-COSY' 2 isotropic 4 1 1 '2D 1H-13C HSQC' 2 isotropic 5 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_refine.entry_id 7XFV _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger A. T. et.al.' 2 'data analysis' NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' Sparky ? Goddard # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7XFV 'double helix' 7XFV 'parallel strands' 7XFV 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 8 1_555 A DG 12 1_555 -2.642 2.760 0.045 4.568 -0.299 83.512 1 A_DG8:DG12_A A 8 ? A 12 ? 6 3 1 B DG 12 1_555 B DG 8 1_555 2.656 -2.797 -0.067 -4.381 0.399 -83.468 2 B_DG26:DG22_B B 26 ? B 22 ? 6 3 1 A DG 7 1_555 A DG 11 1_555 -1.668 3.558 -0.075 3.263 -2.883 89.376 3 A_DG7:DG11_A A 7 ? A 11 ? 6 3 1 B DG 7 1_555 B DG 11 1_555 1.707 3.581 0.084 -3.399 -2.732 -88.836 4 B_DG21:DG25_B B 21 ? B 25 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 8 1_555 A DG 12 1_555 B DG 12 1_555 B DG 8 1_555 -0.405 3.731 -0.011 6.052 1.731 179.779 1.866 0.203 -0.011 0.865 -3.026 179.779 1 AB_DG8DG26:DG22DG12_BA A 8 ? A 12 ? B 26 ? B 22 ? 1 B DG 12 1_555 B DG 8 1_555 A DG 7 1_555 A DG 11 1_555 0.461 -3.621 4.062 -4.744 -1.504 -150.013 1.882 0.215 4.054 0.778 -2.456 -150.042 2 BA_DG26DG7:DG11DG22_AB B 26 ? B 22 ? A 7 ? A 11 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 INOVA ? Varian 600 ? # _atom_sites.entry_id 7XFV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_