HEADER TRANSCRIPTION/DNA 10-APR-22 7XHV TITLE CRYSTAL STRUCTURE OF THE NPAS4-ARNT HETERODIMER IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARNT; COMPND 5 SYNONYM: ARNT PROTEIN,DIOXIN RECEPTOR,NUCLEAR TRANSLOCATOR,HYPOXIA- COMPND 6 INDUCIBLE FACTOR 1-BETA,HIF-1-BETA,HIF1-BETA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NEURONAL PAS DOMAIN-CONTAINING PROTEIN 4; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: NPAS4; COMPND 12 SYNONYM: NEURONAL PAS4,HLH-PAS TRANSCRIPTION FACTOR NXF,LIMBIC- COMPND 13 ENHANCED PAS PROTEIN,LE-PAS; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(P*GP*GP*AP*GP*GP*TP*CP*GP*TP*GP*AP*GP*TP*GP*AP*T)-3'); COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: DNA (5'- COMPND 22 D(P*CP*CP*AP*TP*CP*AP*CP*TP*CP*AP*CP*GP*AP*CP*CP*T)-3'); COMPND 23 CHAIN: D; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMKH; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: NPAS4; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSJ2; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_TAXID: 10090; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_TAXID: 10090; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.N.SUN,L.Q.JING,F.W.LI,D.L.WU REVDAT 3 29-NOV-23 7XHV 1 REMARK REVDAT 2 17-MAY-23 7XHV 1 JRNL REVDAT 1 02-NOV-22 7XHV 0 JRNL AUTH X.SUN,L.JING,F.LI,M.ZHANG,X.DIAO,J.ZHUANG,F.RASTINEJAD,D.WU JRNL TITL STRUCTURES OF NPAS4-ARNT AND NPAS4-ARNT2 HETERODIMERS REVEAL JRNL TITL 2 NEW DIMERIZATION MODALITIES IN THE BHLH-PAS TRANSCRIPTION JRNL TITL 3 FACTOR FAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 04119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36343253 JRNL DOI 10.1073/PNAS.2208804119 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 6763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0740 - 5.0315 1.00 3331 162 0.2682 0.3429 REMARK 3 2 5.0315 - 3.9964 1.00 3127 143 0.2761 0.3199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97846 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6850 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.996 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM TARTRATE DIBASIC, PEG3350, PH REMARK 280 8.0, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.37050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.42300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.42300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 204.55575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.42300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.42300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.18525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.42300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.42300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 204.55575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.42300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.42300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.18525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 136.37050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 LEU A 122 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ASN A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 ASP A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 GLU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 THR A 346 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 PRO A 349 REMARK 465 ASN A 350 REMARK 465 CYS A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 ILE A 357 REMARK 465 CYS A 358 REMARK 465 GLN A 359 REMARK 465 PRO A 360 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 GLN B 161 REMARK 465 SER B 162 REMARK 465 SER B 163 REMARK 465 ARG B 199 REMARK 465 PRO B 200 REMARK 465 ARG B 201 REMARK 465 PRO B 202 REMARK 465 GLY B 203 REMARK 465 PRO B 204 REMARK 465 GLY B 205 REMARK 465 PRO B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 111 NH2 ARG B 51 1.75 REMARK 500 O GLY B 53 N PHE B 56 1.93 REMARK 500 CD1 LEU A 159 NZ LYS B 52 1.96 REMARK 500 O GLY B 53 N PHE B 55 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 53 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 157 -13.13 73.83 REMARK 500 PHE A 158 -4.56 61.29 REMARK 500 LYS B 34 57.94 -95.09 REMARK 500 VAL B 54 -56.86 -26.44 REMARK 500 PHE B 151 -135.96 -52.06 REMARK 500 ASN B 152 68.55 -151.16 REMARK 500 SER B 156 -12.05 100.46 REMARK 500 LEU B 157 -62.00 -124.19 REMARK 500 ARG B 158 -165.37 -168.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XHV A 82 360 UNP P53762 ARNT_MOUSE 82 360 DBREF 7XHV B 1 206 UNP Q8BGD7 NPAS4_MOUSE 1 205 DBREF 7XHV C 1 16 PDB 7XHV 7XHV 1 16 DBREF 7XHV D 1 16 PDB 7XHV 7XHV 1 16 SEQADV 7XHV HIS B 207 UNP Q8BGD7 EXPRESSION TAG SEQADV 7XHV HIS B 208 UNP Q8BGD7 EXPRESSION TAG SEQADV 7XHV HIS B 209 UNP Q8BGD7 EXPRESSION TAG SEQADV 7XHV HIS B 210 UNP Q8BGD7 EXPRESSION TAG SEQADV 7XHV HIS B 211 UNP Q8BGD7 EXPRESSION TAG SEQADV 7XHV HIS B 212 UNP Q8BGD7 EXPRESSION TAG SEQRES 1 A 279 SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN HIS SEQRES 2 A 279 SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR ALA SEQRES 3 A 279 TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SER SEQRES 4 A 279 ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU ARG SEQRES 5 A 279 MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR GLY SEQRES 6 A 279 ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE LEU SEQRES 7 A 279 THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA ALA SEQRES 8 A 279 ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY ARG SEQRES 9 A 279 VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU ASN SEQRES 10 A 279 GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR ASP SEQRES 11 A 279 GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU GLN SEQRES 12 A 279 LEU SER THR SER GLU ASN ALA LEU THR GLY ARG VAL LEU SEQRES 13 A 279 ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN GLN SEQRES 14 A 279 SER SER MET ARG MET CYS MET GLY SER ARG ARG SER PHE SEQRES 15 A 279 ILE CYS ARG MET ARG CYS GLY THR SER SER VAL ASP PRO SEQRES 16 A 279 VAL SER MET ASN ARG LEU SER PHE LEU ARG ASN ARG CYS SEQRES 17 A 279 ARG ASN GLY LEU GLY SER VAL LYS GLU GLY GLU PRO HIS SEQRES 18 A 279 PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA TRP SEQRES 19 A 279 PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO GLU SEQRES 20 A 279 ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE GLY SEQRES 21 A 279 ARG LEU GLN VAL THR SER SER PRO ASN CYS THR ASP MET SEQRES 22 A 279 SER ASN ILE CYS GLN PRO SEQRES 1 B 211 MET TYR ARG SER THR LYS GLY ALA SER LYS ALA ARG ARG SEQRES 2 B 211 ASP GLN ILE ASN ALA GLU ILE ARG ASN LEU LYS GLU LEU SEQRES 3 B 211 LEU PRO LEU ALA GLU ALA ASP LYS VAL ARG LEU SER TYR SEQRES 4 B 211 LEU HIS ILE MET SER LEU ALA CYS ILE TYR THR ARG LYS SEQRES 5 B 211 GLY VAL PHE PHE ALA GLY GLY THR PRO LEU ALA GLY PRO SEQRES 6 B 211 THR GLY LEU LEU SER ALA GLN GLU LEU GLU ASP ILE VAL SEQRES 7 B 211 ALA ALA LEU PRO GLY PHE LEU LEU VAL PHE THR ALA GLU SEQRES 8 B 211 GLY LYS LEU LEU TYR LEU SER GLU SER VAL SER GLU HIS SEQRES 9 B 211 LEU GLY HIS SER MET VAL ASP LEU VAL ALA GLN GLY ASP SEQRES 10 B 211 SER ILE TYR ASP ILE ILE ASP PRO ALA ASP HIS LEU THR SEQRES 11 B 211 VAL ARG GLN GLN LEU THR MET PRO SER ALA LEU ASP ALA SEQRES 12 B 211 ASP ARG LEU PHE ARG CYS ARG PHE ASN THR SER LYS SER SEQRES 13 B 211 LEU ARG ARG GLN SER SER GLY ASN LYS LEU VAL LEU ILE SEQRES 14 B 211 ARG GLY ARG PHE HIS ALA HIS PRO PRO GLY ALA TYR TRP SEQRES 15 B 211 ALA GLY ASN PRO VAL PHE THR ALA PHE CYS ALA PRO LEU SEQRES 16 B 211 GLU PRO ARG PRO ARG PRO GLY PRO GLY PRO HIS HIS HIS SEQRES 17 B 211 HIS HIS HIS SEQRES 1 C 16 DG DG DA DG DG DT DC DG DT DG DA DG DT SEQRES 2 C 16 DG DA DT SEQRES 1 D 16 DC DC DA DT DC DA DC DT DC DA DC DG DA SEQRES 2 D 16 DC DC DT HELIX 1 AA1 ASP A 85 ASP A 114 1 30 HELIX 2 AA2 ASP A 127 LYS A 140 1 14 HELIX 3 AA3 THR A 160 ALA A 172 1 13 HELIX 4 AA4 SER A 192 ASN A 198 1 7 HELIX 5 AA5 PRO A 200 TRP A 204 5 5 HELIX 6 AA6 LEU A 209 VAL A 213 5 5 HELIX 7 AA7 HIS A 214 SER A 226 1 13 HELIX 8 AA8 ALA B 8 LEU B 27 1 20 HELIX 9 AA9 ALA B 30 LYS B 34 5 5 HELIX 10 AB1 SER B 38 THR B 50 1 13 HELIX 11 AB2 GLY B 53 GLY B 58 1 6 HELIX 12 AB3 SER B 70 LEU B 81 1 12 HELIX 13 AB4 SER B 100 LEU B 105 1 6 HELIX 14 AB5 SER B 108 VAL B 113 1 6 HELIX 15 AB6 SER B 118 ILE B 123 1 6 HELIX 16 AB7 ASP B 124 MET B 137 1 14 SHEET 1 AA1 5 VAL A 186 VAL A 189 0 SHEET 2 AA1 5 GLY A 174 SER A 180 -1 N ILE A 178 O VAL A 187 SHEET 3 AA1 5 CYS A 336 LEU A 343 -1 O GLY A 341 N PHE A 175 SHEET 4 AA1 5 VAL A 304 LYS A 313 -1 N THR A 309 O ILE A 340 SHEET 5 AA1 5 ARG A 260 MET A 267 -1 N PHE A 263 O CYS A 308 SHEET 1 AA2 5 LEU B 94 LEU B 97 0 SHEET 2 AA2 5 PHE B 84 THR B 89 -1 N VAL B 87 O TYR B 96 SHEET 3 AA2 5 PHE B 192 PRO B 195 -1 O CYS B 193 N PHE B 84 SHEET 4 AA2 5 LEU B 167 GLY B 172 -1 N LEU B 169 O ALA B 194 SHEET 5 AA2 5 ARG B 145 ARG B 150 -1 N CYS B 149 O VAL B 168 SHEET 1 AA3 3 LEU B 94 LEU B 97 0 SHEET 2 AA3 3 PHE B 84 THR B 89 -1 N VAL B 87 O TYR B 96 SHEET 3 AA3 3 VAL B 188 PHE B 189 -1 O PHE B 189 N PHE B 88 CRYST1 72.846 72.846 272.741 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003666 0.00000