HEADER TRANSCRIPTION 12-APR-22 7XI4 TITLE CRYSTAL STRUCTURE OF THE NPAS4-ARNT HETERODIMER IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARNT; COMPND 5 SYNONYM: ARNT PROTEIN,DIOXIN RECEPTOR,NUCLEAR TRANSLOCATOR,HYPOXIA- COMPND 6 INDUCIBLE FACTOR 1-BETA,HIF-1-BETA,HIF1-BETA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NEURONAL PAS DOMAIN PROTEIN 4; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: NPAS4; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*GP*AP*GP*GP*TP*CP*GP*TP*GP*AP*GP*TP*GP*AP*T)- COMPND 15 3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'- COMPND 20 D(P*CP*CP*AP*TP*CP*AP*CP*TP*CP*AP*CP*GP*AP*CP*CP*T)-3'); COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMKH; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: NPAS4; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSJ2; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_TAXID: 10090; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_TAXID: 10090; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR X.N.SUN,L.Q.JING,F.W.LI,D.L.WU REVDAT 3 29-NOV-23 7XI4 1 REMARK REVDAT 2 17-MAY-23 7XI4 1 JRNL REVDAT 1 02-NOV-22 7XI4 0 JRNL AUTH X.SUN,L.JING,F.LI,M.ZHANG,X.DIAO,J.ZHUANG,F.RASTINEJAD,D.WU JRNL TITL STRUCTURES OF NPAS4-ARNT AND NPAS4-ARNT2 HETERODIMERS REVEAL JRNL TITL 2 NEW DIMERIZATION MODALITIES IN THE BHLH-PAS TRANSCRIPTION JRNL TITL 3 FACTOR FAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 04119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36343253 JRNL DOI 10.1073/PNAS.2208804119 REMARK 2 REMARK 2 RESOLUTION. 4.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 5677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.316 REMARK 3 R VALUE (WORKING SET) : 0.314 REMARK 3 FREE R VALUE : 0.351 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7800 - 4.7070 0.72 2219 134 0.3116 0.3555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.710 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-22. REMARK 100 THE DEPOSITION ID IS D_1300028884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6762 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 23.30 REMARK 200 R MERGE (I) : 0.26100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 19.70 REMARK 200 R MERGE FOR SHELL (I) : 1.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM TARTRATE DIBASIC, PEG3350, PH REMARK 280 8.0, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.56300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.62150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.78150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.62150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.34450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.62150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.62150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.78150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.62150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.62150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.34450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.56300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 VAL A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ASN A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 TRP A 315 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 ASP A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 GLU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 THR A 346 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 PRO A 349 REMARK 465 ASN A 350 REMARK 465 CYS A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 ILE A 357 REMARK 465 CYS A 358 REMARK 465 GLN A 359 REMARK 465 PRO A 360 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 ARG B 3 REMARK 465 SER B 156 REMARK 465 LEU B 157 REMARK 465 ARG B 158 REMARK 465 ARG B 159 REMARK 465 GLN B 160 REMARK 465 SER B 161 REMARK 465 SER B 162 REMARK 465 ARG B 198 REMARK 465 PRO B 199 REMARK 465 ARG B 200 REMARK 465 PRO B 201 REMARK 465 GLY B 202 REMARK 465 PRO B 203 REMARK 465 GLY B 204 REMARK 465 PRO B 205 REMARK 465 GLY B 206 REMARK 465 PRO B 207 REMARK 465 GLY B 208 REMARK 465 PRO B 209 REMARK 465 GLY B 210 REMARK 465 PRO B 211 REMARK 465 ALA B 212 REMARK 465 SER B 213 REMARK 465 LEU B 214 REMARK 465 PHE B 215 REMARK 465 LEU B 216 REMARK 465 ALA B 336 REMARK 465 TYR B 337 REMARK 465 VAL B 338 REMARK 465 LEU B 339 REMARK 465 GLY B 340 REMARK 465 THR B 341 REMARK 465 PRO B 342 REMARK 465 ALA B 343 REMARK 465 VAL B 344 REMARK 465 LEU B 345 REMARK 465 PRO B 346 REMARK 465 SER B 347 REMARK 465 PHE B 348 REMARK 465 LEU B 349 REMARK 465 GLU B 350 REMARK 465 HIS B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 DG C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 127 OG1 THR A 130 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 370 N ALA B 180 5545 2.15 REMARK 500 NE2 GLN A 406 OD2 ASP A 410 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU A 423 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 118 0.20 -69.08 REMARK 500 ARG A 143 51.29 -91.08 REMARK 500 SER A 157 -148.13 -159.37 REMARK 500 PHE A 158 -2.21 81.80 REMARK 500 LEU A 159 141.14 -174.14 REMARK 500 ALA A 171 -34.45 -136.16 REMARK 500 VAL A 187 -61.31 -101.57 REMARK 500 SER A 262 30.70 -147.87 REMARK 500 ARG A 379 1.38 -68.31 REMARK 500 ARG A 434 9.92 59.65 REMARK 500 PRO B 28 45.57 -78.08 REMARK 500 ARG B 36 55.05 -94.00 REMARK 500 PRO B 82 45.38 -85.46 REMARK 500 TYR B 120 3.88 -69.43 REMARK 500 PRO B 138 50.72 -92.22 REMARK 500 SER B 139 -167.73 -128.14 REMARK 500 ASP B 142 13.71 57.43 REMARK 500 ASN B 185 80.86 -158.49 REMARK 500 PRO B 258 0.77 -66.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XI4 A 82 464 UNP P53762 ARNT_MOUSE 82 464 DBREF 7XI4 B 1 348 UNP A1L327 A1L327_MOUSE 1 348 DBREF 7XI4 C 1 16 PDB 7XI4 7XI4 1 16 DBREF 7XI4 D 1 16 PDB 7XI4 7XI4 1 16 SEQADV 7XI4 LEU B 349 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 GLU B 350 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 351 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 352 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 353 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 354 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 355 UNP A1L327 EXPRESSION TAG SEQADV 7XI4 HIS B 356 UNP A1L327 EXPRESSION TAG SEQRES 1 A 383 SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN HIS SEQRES 2 A 383 SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR ALA SEQRES 3 A 383 TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SER SEQRES 4 A 383 ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU ARG SEQRES 5 A 383 MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR GLY SEQRES 6 A 383 ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE LEU SEQRES 7 A 383 THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA ALA SEQRES 8 A 383 ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY ARG SEQRES 9 A 383 VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU ASN SEQRES 10 A 383 GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR ASP SEQRES 11 A 383 GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU GLN SEQRES 12 A 383 LEU SER THR SER GLU ASN ALA LEU THR GLY ARG VAL LEU SEQRES 13 A 383 ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN GLN SEQRES 14 A 383 SER SER MET ARG MET CYS MET GLY SER ARG ARG SER PHE SEQRES 15 A 383 ILE CYS ARG MET ARG CYS GLY THR SER SER VAL ASP PRO SEQRES 16 A 383 VAL SER MET ASN ARG LEU SER PHE LEU ARG ASN ARG CYS SEQRES 17 A 383 ARG ASN GLY LEU GLY SER VAL LYS GLU GLY GLU PRO HIS SEQRES 18 A 383 PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA TRP SEQRES 19 A 383 PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO GLU SEQRES 20 A 383 ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE GLY SEQRES 21 A 383 ARG LEU GLN VAL THR SER SER PRO ASN CYS THR ASP MET SEQRES 22 A 383 SER ASN ILE CYS GLN PRO THR GLU PHE ILE SER ARG HIS SEQRES 23 A 383 ASN ILE GLU GLY ILE PHE THR PHE VAL ASP HIS ARG CYS SEQRES 24 A 383 VAL ALA THR VAL GLY TYR GLN PRO GLN GLU LEU LEU GLY SEQRES 25 A 383 LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU ASP GLN GLN SEQRES 26 A 383 LEU LEU ARG ASP SER PHE GLN GLN VAL VAL LYS LEU LYS SEQRES 27 A 383 GLY GLN VAL LEU SER VAL MET PHE ARG PHE ARG SER LYS SEQRES 28 A 383 THR ARG GLU TRP LEU TRP MET ARG THR SER SER PHE THR SEQRES 29 A 383 PHE GLN ASN PRO TYR SER ASP GLU ILE GLU TYR ILE ILE SEQRES 30 A 383 CYS THR ASN THR ASN VAL SEQRES 1 B 356 MET TYR ARG SER THR LYS GLY ALA SER LYS ALA ARG ARG SEQRES 2 B 356 ASP GLN ILE ASN ALA GLU ILE ARG ASN LEU LYS GLU LEU SEQRES 3 B 356 LEU PRO LEU ALA GLU ALA ASP LYS VAL ARG LEU SER TYR SEQRES 4 B 356 LEU HIS ILE MET SER LEU ALA CYS ILE TYR THR ARG LYS SEQRES 5 B 356 GLY VAL PHE PHE ALA GLY GLY THR PRO LEU ALA GLY PRO SEQRES 6 B 356 THR GLY LEU LEU SER ALA GLN GLU LEU GLU ASP ILE VAL SEQRES 7 B 356 ALA ALA LEU PRO GLY PHE LEU LEU VAL PHE THR ALA GLU SEQRES 8 B 356 GLY LYS LEU LEU TYR LEU SER GLU SER VAL SER GLU HIS SEQRES 9 B 356 LEU GLY HIS SER MET VAL ASP LEU VAL ALA GLN GLY ASP SEQRES 10 B 356 SER ILE TYR ASP ILE ILE ASP PRO ALA ASP HIS LEU THR SEQRES 11 B 356 VAL ARG GLN GLN LEU THR MET PRO SER ALA LEU ASP ALA SEQRES 12 B 356 ASP ARG LEU PHE ARG CYS ARG PHE ASN THR SER LYS SER SEQRES 13 B 356 LEU ARG ARG GLN SER SER GLY ASN LYS LEU VAL LEU ILE SEQRES 14 B 356 ARG GLY ARG PHE HIS ALA HIS PRO PRO GLY ALA TYR TRP SEQRES 15 B 356 ALA GLY ASN PRO VAL PHE THR ALA PHE CYS ALA PRO LEU SEQRES 16 B 356 GLU PRO ARG PRO ARG PRO GLY PRO GLY PRO GLY PRO GLY SEQRES 17 B 356 PRO GLY PRO ALA SER LEU PHE LEU ALA MET PHE GLN SER SEQRES 18 B 356 ARG HIS ALA LYS ASP LEU ALA LEU LEU ASP VAL SER GLU SEQRES 19 B 356 SER VAL LEU ILE TYR LEU GLY PHE GLU ARG SER GLU LEU SEQRES 20 B 356 LEU CYS LYS SER TRP TYR GLY LEU LEU HIS PRO GLU ASP SEQRES 21 B 356 LEU ALA GLN ALA SER SER GLN HIS TYR ARG LEU LEU ALA SEQRES 22 B 356 GLU SER GLY ASP ILE GLN ALA GLU MET VAL VAL ARG LEU SEQRES 23 B 356 GLN ALA LYS HIS GLY GLY TRP THR TRP ILE TYR CYS MET SEQRES 24 B 356 LEU TYR SER GLU GLY PRO GLU GLY PRO ILE THR ALA ASN SEQRES 25 B 356 ASN TYR PRO ILE SER ASP THR GLU ALA TRP SER LEU ARG SEQRES 26 B 356 GLN GLN LEU ASN SER GLU ASP THR GLN ALA ALA TYR VAL SEQRES 27 B 356 LEU GLY THR PRO ALA VAL LEU PRO SER PHE LEU GLU HIS SEQRES 28 B 356 HIS HIS HIS HIS HIS SEQRES 1 C 16 DG DG DA DG DG DT DC DG DT DG DA DG DT SEQRES 2 C 16 DG DA DT SEQRES 1 D 16 DC DC DA DT DC DA DC DT DC DA DC DG DA SEQRES 2 D 16 DC DC DT HELIX 1 AA1 SER A 82 VAL A 116 1 35 HELIX 2 AA2 ASP A 127 ARG A 143 1 17 HELIX 3 AA3 THR A 160 GLU A 170 1 11 HELIX 4 AA4 SER A 192 LEU A 197 1 6 HELIX 5 AA5 HIS A 214 ASP A 217 5 4 HELIX 6 AA6 VAL A 218 GLU A 223 1 6 HELIX 7 AA7 ARG A 379 VAL A 384 1 6 HELIX 8 AA8 GLN A 387 LEU A 392 1 6 HELIX 9 AA9 ASN A 395 CYS A 400 5 6 HELIX 10 AB1 ASP A 404 LEU A 418 1 15 HELIX 11 AB2 THR B 5 LEU B 27 1 23 HELIX 12 AB3 ALA B 30 VAL B 35 1 6 HELIX 13 AB4 SER B 38 GLY B 58 1 21 HELIX 14 AB5 SER B 70 ALA B 80 1 11 HELIX 15 AB6 VAL B 101 GLY B 106 1 6 HELIX 16 AB7 SER B 108 VAL B 113 1 6 HELIX 17 AB8 SER B 118 ILE B 122 5 5 HELIX 18 AB9 ASP B 124 ALA B 126 5 3 HELIX 19 AC1 ASP B 127 MET B 137 1 11 HELIX 20 AC2 SER B 235 LEU B 240 1 6 HELIX 21 AC3 GLU B 243 LEU B 248 1 6 HELIX 22 AC4 SER B 251 LEU B 256 5 6 HELIX 23 AC5 ASP B 260 GLU B 274 1 15 HELIX 24 AC6 ASP B 318 GLN B 334 1 17 SHEET 1 AA1 4 TYR A 188 VAL A 189 0 SHEET 2 AA1 4 PHE A 177 SER A 180 -1 N ILE A 178 O TYR A 188 SHEET 3 AA1 4 CYS A 336 ILE A 340 -1 O LEU A 337 N VAL A 179 SHEET 4 AA1 4 THR A 309 LYS A 313 -1 N THR A 309 O ILE A 340 SHEET 1 AA2 2 ILE A 264 MET A 267 0 SHEET 2 AA2 2 VAL A 304 HIS A 307 -1 O VAL A 304 N MET A 267 SHEET 1 AA3 5 PHE A 373 VAL A 376 0 SHEET 2 AA3 5 PHE A 363 HIS A 367 -1 N ARG A 366 O PHE A 375 SHEET 3 AA3 5 ILE A 454 ASN A 463 -1 O ILE A 457 N HIS A 367 SHEET 4 AA3 5 LEU A 437 GLN A 447 -1 N SER A 442 O THR A 460 SHEET 5 AA3 5 LEU A 423 PHE A 429 -1 N VAL A 425 O THR A 441 SHEET 1 AA4 5 LEU B 94 LEU B 97 0 SHEET 2 AA4 5 PHE B 84 THR B 89 -1 N VAL B 87 O LEU B 95 SHEET 3 AA4 5 VAL B 187 PRO B 194 -1 O ALA B 190 N LEU B 86 SHEET 4 AA4 5 LEU B 166 PHE B 173 -1 N LEU B 168 O ALA B 193 SHEET 5 AA4 5 ASP B 144 ARG B 150 -1 N CYS B 149 O VAL B 167 SHEET 1 AA5 5 ASP B 231 VAL B 232 0 SHEET 2 AA5 5 PHE B 219 HIS B 223 -1 N ARG B 222 O ASP B 231 SHEET 3 AA5 5 ILE B 309 PRO B 315 -1 O ILE B 309 N HIS B 223 SHEET 4 AA5 5 THR B 294 SER B 302 -1 N TYR B 297 O TYR B 314 SHEET 5 AA5 5 GLN B 279 LEU B 286 -1 N VAL B 284 O ILE B 296 CRYST1 105.243 105.243 215.126 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004648 0.00000