HEADER TRANSFERASE 05-MAY-22 7XPS TITLE CRYSTAL STRUCTRUE OF MTDL:GDP:MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGLYCOSYLSE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINACTINOSPORA THERMOTOLERANS; SOURCE 3 ORGANISM_TAXID: 531310; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.D.LI,C.HE REVDAT 2 29-NOV-23 7XPS 1 REMARK REVDAT 1 29-MAR-23 7XPS 0 JRNL AUTH X.DU,X.CHU,N.LIU,X.JIA,H.PENG,Y.XIAO,L.LIU,H.YU,F.LI,C.HE JRNL TITL STRUCTURES OF THE NDP-PYRANOSE MUTASE BELONGING TO JRNL TITL 2 GLYCOSYLTRANSFERASE FAMILY 75 REVEAL RESIDUES IMPORTANT FOR JRNL TITL 3 MN 2+ COORDINATION AND SUBSTRATE BINDING. JRNL REF J.BIOL.CHEM. V. 299 02903 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36642179 JRNL DOI 10.1016/J.JBC.2023.102903 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 54188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8500 - 5.6600 0.98 2699 128 0.2151 0.2419 REMARK 3 2 5.6600 - 4.5100 0.99 2611 144 0.2034 0.2450 REMARK 3 3 4.5100 - 3.9400 0.99 2613 133 0.1943 0.1916 REMARK 3 4 3.9400 - 3.5900 0.99 2579 165 0.1997 0.2250 REMARK 3 5 3.5900 - 3.3300 1.00 2625 114 0.2061 0.2643 REMARK 3 6 3.3300 - 3.1300 0.98 2566 115 0.2148 0.2679 REMARK 3 7 3.1300 - 2.9800 0.99 2570 147 0.2137 0.2649 REMARK 3 8 2.9800 - 2.8500 0.99 2581 136 0.2218 0.2699 REMARK 3 9 2.8500 - 2.7400 0.99 2570 132 0.2163 0.3021 REMARK 3 10 2.7400 - 2.6400 0.99 2574 127 0.2255 0.2923 REMARK 3 11 2.6400 - 2.5600 1.00 2565 137 0.2242 0.3100 REMARK 3 12 2.5600 - 2.4900 0.99 2579 126 0.2344 0.2905 REMARK 3 13 2.4900 - 2.4200 0.98 2484 134 0.2387 0.2922 REMARK 3 14 2.4200 - 2.3600 0.99 2573 138 0.2412 0.2926 REMARK 3 15 2.3600 - 2.3100 0.99 2550 148 0.2424 0.2725 REMARK 3 16 2.3100 - 2.2600 0.99 2550 136 0.2654 0.3006 REMARK 3 17 2.2600 - 2.2200 0.99 2557 129 0.3320 0.4756 REMARK 3 18 2.2200 - 2.1700 1.00 2546 138 0.2827 0.3212 REMARK 3 19 2.1700 - 2.1400 0.99 2539 160 0.2748 0.3097 REMARK 3 20 2.1400 - 2.1000 1.00 2523 147 0.3089 0.4324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5409 -13.7061 -32.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.1989 REMARK 3 T33: 0.1817 T12: 0.0140 REMARK 3 T13: -0.0088 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.2921 L22: 1.8995 REMARK 3 L33: 0.5337 L12: 0.1995 REMARK 3 L13: -0.3211 L23: -0.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.0080 S13: -0.0319 REMARK 3 S21: -0.0122 S22: 0.0353 S23: -0.2173 REMARK 3 S31: 0.0517 S32: 0.0251 S33: -0.0525 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6273 23.0440 0.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.4415 T22: 0.3507 REMARK 3 T33: 0.2105 T12: -0.0374 REMARK 3 T13: -0.0126 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.0106 L22: 2.7624 REMARK 3 L33: 4.1512 L12: 0.2678 REMARK 3 L13: 0.5060 L23: 0.3451 REMARK 3 S TENSOR REMARK 3 S11: 0.1704 S12: -0.7190 S13: -0.2400 REMARK 3 S21: 0.6389 S22: -0.1666 S23: -0.0466 REMARK 3 S31: 0.2234 S32: 0.0242 S33: 0.0062 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8060 26.0147 -15.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.2851 T22: 0.2185 REMARK 3 T33: 0.2672 T12: -0.0204 REMARK 3 T13: -0.0477 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.8183 L22: 1.4490 REMARK 3 L33: 1.9053 L12: 0.0201 REMARK 3 L13: -0.7124 L23: 0.1727 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.2376 S13: -0.0103 REMARK 3 S21: 0.2926 S22: 0.0189 S23: -0.1109 REMARK 3 S31: -0.0198 S32: 0.1000 S33: -0.0349 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7125 21.3651 -25.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.2642 T22: 0.2192 REMARK 3 T33: 0.2355 T12: -0.0169 REMARK 3 T13: 0.0105 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.2991 L22: 1.5971 REMARK 3 L33: 0.5912 L12: 0.1717 REMARK 3 L13: 0.0493 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0102 S13: 0.0409 REMARK 3 S21: -0.0009 S22: 0.0225 S23: -0.0527 REMARK 3 S31: -0.0326 S32: 0.0214 S33: -0.0448 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4594 -17.7492 -52.3372 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.2292 REMARK 3 T33: 0.2035 T12: 0.0100 REMARK 3 T13: 0.0520 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.8243 L22: 1.7105 REMARK 3 L33: 1.3242 L12: -0.2234 REMARK 3 L13: 0.4837 L23: -0.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.3889 S13: 0.0135 REMARK 3 S21: -0.4518 S22: -0.0335 S23: -0.1689 REMARK 3 S31: 0.1044 S32: 0.0715 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M TRI REMARK 280 -SODIUM CITRATE, PH 5.6, 15% (W/V) PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.24800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.24800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.34700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.12150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.34700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.12150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.24800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.34700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.12150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.24800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.34700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.12150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.24800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 723 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 375 REMARK 465 THR A 376 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 375 REMARK 465 THR B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 750 O HOH A 785 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 73.51 55.60 REMARK 500 ASN A 230 64.48 -161.02 REMARK 500 ASN A 290 -71.14 -60.34 REMARK 500 ASN B 230 68.72 -159.31 REMARK 500 PRO B 288 154.95 -45.49 REMARK 500 ASN B 290 -73.60 -61.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 818 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 820 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 821 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 822 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 819 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 820 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 821 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 823 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 824 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 8.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD1 REMARK 620 2 ASP A 111 OD2 52.1 REMARK 620 3 HIS A 287 NE2 105.8 94.1 REMARK 620 4 GDP A 401 O3B 161.3 126.0 92.8 REMARK 620 5 GDP A 401 O2A 86.7 83.9 162.6 74.7 REMARK 620 6 HOH A 501 O 86.9 138.5 104.7 90.2 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD1 REMARK 620 2 ASP B 111 OD2 49.0 REMARK 620 3 HIS B 287 NE2 101.3 81.4 REMARK 620 4 GDP B 401 O1B 161.4 126.5 95.0 REMARK 620 5 GDP B 401 O1A 82.0 90.3 165.1 80.0 REMARK 620 N 1 2 3 4 DBREF 7XPS A 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 DBREF 7XPS B 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 SEQADV 7XPS HIS A 0 UNP G8HX37 EXPRESSION TAG SEQADV 7XPS HIS B 0 UNP G8HX37 EXPRESSION TAG SEQRES 1 A 377 HIS MET SER GLY ARG ASP ILE SER THR ALA VAL VAL VAL SEQRES 2 A 377 THR THR ILE SER ASP GLY GLY PHE LEU ASP ARG LEU ALA SEQRES 3 A 377 PRO ALA LEU ARG ASP ALA GLY ALA ARG LEU ILE VAL ILE SEQRES 4 A 377 PRO ASP ARG ASN THR GLY PRO ALA LEU PHE ALA ALA CYS SEQRES 5 A 377 GLU ARG HIS ARG ARG LEU GLY LEU ASP VAL VAL CYS PRO SEQRES 6 A 377 SER VAL ALA GLU GLN GLN ASP LEU LEU GLU ARG LEU ALA SEQRES 7 A 377 VAL PRO ASP LEU ILE PRO TYR HIS SER ASP ASN ARG ARG SEQRES 8 A 377 ASN VAL GLY TYR LEU MET ALA TRP MET GLU GLY PHE ASP SEQRES 9 A 377 VAL ILE VAL SER MET ASP ASP ASP ASN LEU PRO THR THR SEQRES 10 A 377 ASP ASP PHE VAL GLU ARG HIS GLN VAL VAL CYS GLN GLY SEQRES 11 A 377 PRO ARG THR GLN PRO VAL THR ALA SER SER ASP GLY TRP SEQRES 12 A 377 PHE ASN ASN CYS ALA LEU LEU GLU VAL GLU PRO THR GLU SEQRES 13 A 377 VAL PHE PRO ARG GLY PHE PRO PHE HIS ALA ARG PRO ALA SEQRES 14 A 377 HIS ALA GLN ALA ARG THR SER VAL CYS GLU ARG PRO ALA SEQRES 15 A 377 ASP VAL ARG ILE ASN ALA GLY LEU TRP LEU GLY ASP PRO SEQRES 16 A 377 ASP VAL ASP ALA ILE THR ARG LEU ALA VAL ARG PRO ASN SEQRES 17 A 377 ALA LEU ALA HIS SER GLY GLY SER VAL VAL LEU ALA GLU SEQRES 18 A 377 GLY THR TRP CYS PRO VAL ASN SER GLN ASN THR ALA VAL SEQRES 19 A 377 HIS ARG ASP ALA LEU PRO ALA TYR TYR PHE LEU ARG MET SEQRES 20 A 377 GLY GLN PRO VAL ASP GLY VAL PRO MET GLU ARG PHE GLY SEQRES 21 A 377 ASP ILE PHE SER GLY TYR PHE VAL GLN VAL CYS ALA GLN SEQRES 22 A 377 HIS LEU GLY HIS ALA VAL ARG PHE GLY ASP PRO VAL VAL SEQRES 23 A 377 GLU HIS PRO ARG ASN GLU HIS ASP LEU LEU ASP ASP LEU SEQRES 24 A 377 HIS LYS GLU VAL PRO ALA VAL ARG LEU LEU ASP ASP ILE SEQRES 25 A 377 LEU ASP HIS LEU ARG ASP HIS PRO LEU GLU GLY GLY ASP SEQRES 26 A 377 TYR LEU GLU THR TYR GLU SER LEU SER TYR ALA LEU GLN SEQRES 27 A 377 GLU ILE ALA GLU ARG VAL ASN GLY ARG ALA TRP SER PRO SEQRES 28 A 377 ASP ALA ARG ALA PHE LEU HIS ARG SER ALA HIS LEU MET SEQRES 29 A 377 ARG SER TRP THR GLY ALA LEU ARG THR VAL ALA GLY THR SEQRES 1 B 377 HIS MET SER GLY ARG ASP ILE SER THR ALA VAL VAL VAL SEQRES 2 B 377 THR THR ILE SER ASP GLY GLY PHE LEU ASP ARG LEU ALA SEQRES 3 B 377 PRO ALA LEU ARG ASP ALA GLY ALA ARG LEU ILE VAL ILE SEQRES 4 B 377 PRO ASP ARG ASN THR GLY PRO ALA LEU PHE ALA ALA CYS SEQRES 5 B 377 GLU ARG HIS ARG ARG LEU GLY LEU ASP VAL VAL CYS PRO SEQRES 6 B 377 SER VAL ALA GLU GLN GLN ASP LEU LEU GLU ARG LEU ALA SEQRES 7 B 377 VAL PRO ASP LEU ILE PRO TYR HIS SER ASP ASN ARG ARG SEQRES 8 B 377 ASN VAL GLY TYR LEU MET ALA TRP MET GLU GLY PHE ASP SEQRES 9 B 377 VAL ILE VAL SER MET ASP ASP ASP ASN LEU PRO THR THR SEQRES 10 B 377 ASP ASP PHE VAL GLU ARG HIS GLN VAL VAL CYS GLN GLY SEQRES 11 B 377 PRO ARG THR GLN PRO VAL THR ALA SER SER ASP GLY TRP SEQRES 12 B 377 PHE ASN ASN CYS ALA LEU LEU GLU VAL GLU PRO THR GLU SEQRES 13 B 377 VAL PHE PRO ARG GLY PHE PRO PHE HIS ALA ARG PRO ALA SEQRES 14 B 377 HIS ALA GLN ALA ARG THR SER VAL CYS GLU ARG PRO ALA SEQRES 15 B 377 ASP VAL ARG ILE ASN ALA GLY LEU TRP LEU GLY ASP PRO SEQRES 16 B 377 ASP VAL ASP ALA ILE THR ARG LEU ALA VAL ARG PRO ASN SEQRES 17 B 377 ALA LEU ALA HIS SER GLY GLY SER VAL VAL LEU ALA GLU SEQRES 18 B 377 GLY THR TRP CYS PRO VAL ASN SER GLN ASN THR ALA VAL SEQRES 19 B 377 HIS ARG ASP ALA LEU PRO ALA TYR TYR PHE LEU ARG MET SEQRES 20 B 377 GLY GLN PRO VAL ASP GLY VAL PRO MET GLU ARG PHE GLY SEQRES 21 B 377 ASP ILE PHE SER GLY TYR PHE VAL GLN VAL CYS ALA GLN SEQRES 22 B 377 HIS LEU GLY HIS ALA VAL ARG PHE GLY ASP PRO VAL VAL SEQRES 23 B 377 GLU HIS PRO ARG ASN GLU HIS ASP LEU LEU ASP ASP LEU SEQRES 24 B 377 HIS LYS GLU VAL PRO ALA VAL ARG LEU LEU ASP ASP ILE SEQRES 25 B 377 LEU ASP HIS LEU ARG ASP HIS PRO LEU GLU GLY GLY ASP SEQRES 26 B 377 TYR LEU GLU THR TYR GLU SER LEU SER TYR ALA LEU GLN SEQRES 27 B 377 GLU ILE ALA GLU ARG VAL ASN GLY ARG ALA TRP SER PRO SEQRES 28 B 377 ASP ALA ARG ALA PHE LEU HIS ARG SER ALA HIS LEU MET SEQRES 29 B 377 ARG SER TRP THR GLY ALA LEU ARG THR VAL ALA GLY THR HET GDP A 401 28 HET MN A 402 1 HET GDP B 401 28 HET MN B 402 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *649(H2 O) HELIX 1 AA1 PHE A 20 ASP A 30 1 11 HELIX 2 AA2 PRO A 45 LEU A 57 1 13 HELIX 3 AA3 SER A 65 LEU A 76 1 12 HELIX 4 AA4 SER A 86 ASN A 88 5 3 HELIX 5 AA5 ARG A 89 GLU A 100 1 12 HELIX 6 AA6 ASP A 118 GLN A 124 1 7 HELIX 7 AA7 VAL A 125 GLN A 128 5 4 HELIX 8 AA8 ASN A 144 ALA A 147 5 4 HELIX 9 AA9 ARG A 166 ALA A 172 5 7 HELIX 10 AB1 ASP A 197 ARG A 205 1 9 HELIX 11 AB2 ALA A 237 TYR A 241 5 5 HELIX 12 AB3 PHE A 258 LEU A 274 1 17 HELIX 13 AB4 ASP A 293 ASP A 317 1 25 HELIX 14 AB5 ASP A 324 VAL A 343 1 20 HELIX 15 AB6 SER A 349 ALA A 374 1 26 HELIX 16 AB7 PHE B 20 ALA B 31 1 12 HELIX 17 AB8 PRO B 45 LEU B 57 1 13 HELIX 18 AB9 SER B 65 LEU B 76 1 12 HELIX 19 AC1 SER B 86 ASN B 88 5 3 HELIX 20 AC2 ARG B 89 GLU B 100 1 12 HELIX 21 AC3 ASP B 118 GLN B 124 1 7 HELIX 22 AC4 VAL B 125 GLN B 128 5 4 HELIX 23 AC5 ASN B 144 ALA B 147 5 4 HELIX 24 AC6 ARG B 166 ALA B 172 5 7 HELIX 25 AC7 ASP B 197 ARG B 205 1 9 HELIX 26 AC8 ALA B 237 TYR B 241 5 5 HELIX 27 AC9 PHE B 258 LEU B 274 1 17 HELIX 28 AD1 ASP B 293 HIS B 318 1 26 HELIX 29 AD2 ASP B 324 VAL B 343 1 20 HELIX 30 AD3 SER B 349 ALA B 374 1 26 SHEET 1 AA1 8 ASP A 60 VAL A 62 0 SHEET 2 AA1 8 ARG A 34 ILE A 38 1 N VAL A 37 O VAL A 62 SHEET 3 AA1 8 THR A 8 THR A 13 1 N VAL A 10 O ARG A 34 SHEET 4 AA1 8 VAL A 104 MET A 108 1 O VAL A 106 N VAL A 11 SHEET 5 AA1 8 ASN A 230 HIS A 234 -1 O THR A 231 N SER A 107 SHEET 6 AA1 8 VAL A 183 GLY A 192 -1 N ARG A 184 O HIS A 234 SHEET 7 AA1 8 ALA A 277 HIS A 287 1 O ARG A 279 N ALA A 187 SHEET 8 AA1 8 LEU A 113 PRO A 114 -1 N LEU A 113 O GLU A 286 SHEET 1 AA2 8 ASP A 60 VAL A 62 0 SHEET 2 AA2 8 ARG A 34 ILE A 38 1 N VAL A 37 O VAL A 62 SHEET 3 AA2 8 THR A 8 THR A 13 1 N VAL A 10 O ARG A 34 SHEET 4 AA2 8 VAL A 104 MET A 108 1 O VAL A 106 N VAL A 11 SHEET 5 AA2 8 ASN A 230 HIS A 234 -1 O THR A 231 N SER A 107 SHEET 6 AA2 8 VAL A 183 GLY A 192 -1 N ARG A 184 O HIS A 234 SHEET 7 AA2 8 ALA A 277 HIS A 287 1 O ARG A 279 N ALA A 187 SHEET 8 AA2 8 VAL A 216 VAL A 217 -1 N VAL A 216 O PHE A 280 SHEET 1 AA3 2 ARG A 131 SER A 138 0 SHEET 2 AA3 2 THR A 174 ALA A 181 -1 O SER A 175 N ALA A 137 SHEET 1 AA4 2 LEU A 149 GLU A 152 0 SHEET 2 AA4 2 ASN A 207 HIS A 211 -1 O LEU A 209 N GLU A 150 SHEET 1 AA5 2 PRO A 249 VAL A 250 0 SHEET 2 AA5 2 VAL A 253 PRO A 254 -1 O VAL A 253 N VAL A 250 SHEET 1 AA6 8 ASP B 60 VAL B 62 0 SHEET 2 AA6 8 ARG B 34 ILE B 38 1 N LEU B 35 O ASP B 60 SHEET 3 AA6 8 THR B 8 THR B 13 1 N VAL B 10 O ARG B 34 SHEET 4 AA6 8 VAL B 104 MET B 108 1 O VAL B 106 N VAL B 11 SHEET 5 AA6 8 ASN B 230 HIS B 234 -1 O THR B 231 N SER B 107 SHEET 6 AA6 8 VAL B 183 GLY B 192 -1 N GLY B 188 O ASN B 230 SHEET 7 AA6 8 ALA B 277 HIS B 287 1 O VAL B 285 N LEU B 191 SHEET 8 AA6 8 LEU B 113 PRO B 114 -1 N LEU B 113 O GLU B 286 SHEET 1 AA7 8 ASP B 60 VAL B 62 0 SHEET 2 AA7 8 ARG B 34 ILE B 38 1 N LEU B 35 O ASP B 60 SHEET 3 AA7 8 THR B 8 THR B 13 1 N VAL B 10 O ARG B 34 SHEET 4 AA7 8 VAL B 104 MET B 108 1 O VAL B 106 N VAL B 11 SHEET 5 AA7 8 ASN B 230 HIS B 234 -1 O THR B 231 N SER B 107 SHEET 6 AA7 8 VAL B 183 GLY B 192 -1 N GLY B 188 O ASN B 230 SHEET 7 AA7 8 ALA B 277 HIS B 287 1 O VAL B 285 N LEU B 191 SHEET 8 AA7 8 VAL B 216 VAL B 217 -1 N VAL B 216 O PHE B 280 SHEET 1 AA8 2 ARG B 131 SER B 138 0 SHEET 2 AA8 2 THR B 174 ALA B 181 -1 O SER B 175 N ALA B 137 SHEET 1 AA9 2 LEU B 149 GLU B 152 0 SHEET 2 AA9 2 ASN B 207 HIS B 211 -1 O LEU B 209 N GLU B 150 SHEET 1 AB1 2 PRO B 249 VAL B 250 0 SHEET 2 AB1 2 VAL B 253 PRO B 254 -1 O VAL B 253 N VAL B 250 LINK OD1 ASP A 111 MN MN A 402 1555 1555 2.65 LINK OD2 ASP A 111 MN MN A 402 1555 1555 2.30 LINK NE2 HIS A 287 MN MN A 402 1555 1555 2.35 LINK O3B GDP A 401 MN MN A 402 1555 1555 2.44 LINK O2A GDP A 401 MN MN A 402 1555 1555 2.32 LINK MN MN A 402 O HOH A 501 1555 1555 2.18 LINK OD1 ASP B 111 MN MN B 402 1555 1555 2.76 LINK OD2 ASP B 111 MN MN B 402 1555 1555 2.51 LINK NE2 HIS B 287 MN MN B 402 1555 1555 2.46 LINK O1B GDP B 401 MN MN B 402 1555 1555 2.16 LINK O1A GDP B 401 MN MN B 402 1555 1555 2.28 CISPEP 1 GLU A 152 PRO A 153 0 3.11 CISPEP 2 ASP A 282 PRO A 283 0 -1.35 CISPEP 3 GLU B 152 PRO B 153 0 2.21 CISPEP 4 ASP B 282 PRO B 283 0 -1.24 CRYST1 98.694 162.243 116.496 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008584 0.00000