HEADER TRANSFERASE 05-MAY-22 7XPV TITLE CRYSTEAL STRUCTURE OF MTDL-S228A-HIS SOAKED WITH GDP-FUCF AND MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGLYCOSYLSE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINACTINOSPORA THERMOTOLERANS; SOURCE 3 ORGANISM_TAXID: 531310; SOURCE 4 EXPRESSION_SYSTEM: MARINACTINOSPORA THERMOTOLERANS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 531310 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.D.LI,C.HE REVDAT 2 29-NOV-23 7XPV 1 REMARK REVDAT 1 29-MAR-23 7XPV 0 JRNL AUTH X.DU,X.CHU,N.LIU,X.JIA,H.PENG,Y.XIAO,L.LIU,H.YU,F.LI,C.HE JRNL TITL STRUCTURES OF THE NDP-PYRANOSE MUTASE BELONGING TO JRNL TITL 2 GLYCOSYLTRANSFERASE FAMILY 75 REVEAL RESIDUES IMPORTANT FOR JRNL TITL 3 MN 2+ COORDINATION AND SUBSTRATE BINDING. JRNL REF J.BIOL.CHEM. V. 299 02903 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36642179 JRNL DOI 10.1016/J.JBC.2023.102903 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9300 - 5.6400 0.99 2750 164 0.2515 0.2591 REMARK 3 2 5.6400 - 4.4800 1.00 2703 135 0.2305 0.2720 REMARK 3 3 4.4800 - 3.9100 1.00 2654 143 0.2188 0.2607 REMARK 3 4 3.9100 - 3.5500 1.00 2647 130 0.2366 0.2537 REMARK 3 5 3.5500 - 3.3000 1.00 2624 155 0.2574 0.3382 REMARK 3 6 3.3000 - 3.1100 0.99 2637 135 0.2719 0.3208 REMARK 3 7 3.1100 - 2.9500 0.99 2617 126 0.2723 0.2728 REMARK 3 8 2.9500 - 2.8200 1.00 2626 143 0.3003 0.3403 REMARK 3 9 2.8200 - 2.7100 0.99 2574 132 0.2883 0.3696 REMARK 3 10 2.7100 - 2.6200 1.00 2634 145 0.2869 0.3091 REMARK 3 11 2.6200 - 2.5400 1.00 2645 118 0.2975 0.2984 REMARK 3 12 2.5400 - 2.4600 0.99 2590 147 0.3149 0.3832 REMARK 3 13 2.4600 - 2.4000 1.00 2565 150 0.3283 0.3562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2403 23.1203 -2.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.6320 T22: 0.4642 REMARK 3 T33: 0.3904 T12: -0.0616 REMARK 3 T13: 0.0329 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 5.3516 L22: 3.5784 REMARK 3 L33: 4.7630 L12: -0.5034 REMARK 3 L13: 2.1600 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.7129 S13: 0.0883 REMARK 3 S21: 0.6025 S22: -0.0928 S23: 0.3728 REMARK 3 S31: 0.1940 S32: -0.0145 S33: 0.0573 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7761 21.9722 -22.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.2416 REMARK 3 T33: 0.4004 T12: -0.0607 REMARK 3 T13: 0.0133 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 2.5700 L22: 1.8883 REMARK 3 L33: 1.1278 L12: 0.1907 REMARK 3 L13: 0.0035 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0337 S13: 0.1423 REMARK 3 S21: 0.0076 S22: 0.0072 S23: -0.3552 REMARK 3 S31: -0.0374 S32: 0.0983 S33: -0.0232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6094 22.4255 -26.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.4127 T22: 0.2710 REMARK 3 T33: 0.3582 T12: -0.0308 REMARK 3 T13: 0.0769 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.6594 L22: 2.9131 REMARK 3 L33: 1.3181 L12: 0.1353 REMARK 3 L13: 1.0975 L23: 0.7088 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0267 S13: 0.0136 REMARK 3 S21: -0.1590 S22: 0.0829 S23: 0.0026 REMARK 3 S31: -0.1488 S32: 0.0545 S33: -0.0767 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8656 -14.6100 -57.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.5848 T22: 0.3670 REMARK 3 T33: 0.2643 T12: -0.0269 REMARK 3 T13: 0.0891 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.6045 L22: 1.3864 REMARK 3 L33: 2.8803 L12: 1.0731 REMARK 3 L13: -0.8096 L23: -0.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.2997 S12: 0.5655 S13: 0.0611 REMARK 3 S21: -0.7137 S22: 0.3398 S23: -0.0659 REMARK 3 S31: 0.0581 S32: -0.0729 S33: -0.1405 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1104 -20.6072 -47.9639 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.2145 REMARK 3 T33: 0.4574 T12: 0.0313 REMARK 3 T13: 0.0152 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 1.3772 L22: 1.3372 REMARK 3 L33: 2.3022 L12: -0.7830 REMARK 3 L13: -0.3381 L23: -0.3344 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.4516 S13: -0.3300 REMARK 3 S21: -0.3766 S22: -0.0773 S23: -0.3133 REMARK 3 S31: 0.2151 S32: -0.0695 S33: -0.0456 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8319 -8.4290 -28.2747 REMARK 3 T TENSOR REMARK 3 T11: 0.4996 T22: 0.2016 REMARK 3 T33: 0.4347 T12: -0.0133 REMARK 3 T13: -0.0654 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 2.2740 L22: 7.2221 REMARK 3 L33: 3.9352 L12: 0.6243 REMARK 3 L13: 0.3307 L23: -1.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: -0.4210 S13: 0.2857 REMARK 3 S21: 0.0508 S22: 0.0532 S23: -0.8459 REMARK 3 S31: -0.0830 S32: 0.2164 S33: 0.0785 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9222 -14.7044 -35.1247 REMARK 3 T TENSOR REMARK 3 T11: 0.4526 T22: 0.2222 REMARK 3 T33: 0.3550 T12: 0.0504 REMARK 3 T13: 0.0111 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.5905 L22: 2.0880 REMARK 3 L33: 1.0052 L12: 0.4678 REMARK 3 L13: -0.6487 L23: 0.3426 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0429 S13: -0.0810 REMARK 3 S21: 0.1568 S22: 0.0577 S23: -0.3219 REMARK 3 S31: 0.0660 S32: 0.0918 S33: -0.0991 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4077 -11.8549 -27.0303 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.2408 REMARK 3 T33: 0.2189 T12: -0.0441 REMARK 3 T13: 0.0159 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9285 L22: 8.6578 REMARK 3 L33: 2.5079 L12: -1.5069 REMARK 3 L13: 0.1252 L23: 0.7226 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0579 S13: -0.0087 REMARK 3 S21: 0.1897 S22: 0.1390 S23: -0.1031 REMARK 3 S31: 0.2652 S32: 0.0237 S33: -0.0849 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 325 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9231 -20.1303 -29.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.3185 T22: 0.1993 REMARK 3 T33: 0.3205 T12: -0.0161 REMARK 3 T13: 0.0079 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 3.2136 L22: 5.2197 REMARK 3 L33: 4.7764 L12: -0.3608 REMARK 3 L13: -1.2412 L23: 0.9630 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: -0.1127 S13: -0.0098 REMARK 3 S21: 0.6321 S22: 0.0475 S23: -0.1005 REMARK 3 S31: 0.7103 S32: -0.1791 S33: 0.0162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 7.5, 20% (W/V) PEG 5000 MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.46350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.46350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.06750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.06750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.46350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.06750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.46350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.06750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 81.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -57.46350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 375 REMARK 465 THR A 376 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 375 REMARK 465 THR B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 70.70 58.21 REMARK 500 ASP A 118 37.75 -87.81 REMARK 500 ARG A 205 73.59 51.14 REMARK 500 ASN A 230 60.20 -159.13 REMARK 500 ASP B 118 38.91 -89.58 REMARK 500 ARG B 205 70.75 52.72 REMARK 500 ASN B 230 59.92 -158.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD2 REMARK 620 2 HIS A 287 NE2 83.9 REMARK 620 3 GRJ A 401 O2 137.4 94.3 REMARK 620 4 GRJ A 401 O6 104.2 171.3 77.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD1 REMARK 620 2 ASP B 111 OD2 52.3 REMARK 620 3 HIS B 287 NE2 98.6 90.5 REMARK 620 4 GRJ B 401 O2 164.1 132.3 96.6 REMARK 620 5 GRJ B 401 O6 85.3 93.6 175.6 79.4 REMARK 620 N 1 2 3 4 DBREF 7XPV A 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 DBREF 7XPV B 1 376 UNP G8HX37 G8HX37_9ACTN 1 376 SEQADV 7XPV GLY A -18 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER A -17 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER A -16 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -15 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -14 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -13 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -12 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -11 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A -10 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER A -9 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER A -8 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLY A -7 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLU A -6 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV ASN A -5 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV LEU A -4 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV TYR A -3 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV PHE A -2 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLN A -1 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS A 0 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV ALA A 228 UNP G8HX37 SER 228 ENGINEERED MUTATION SEQADV 7XPV GLY B -18 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER B -17 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER B -16 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -15 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -14 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -13 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -12 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -11 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B -10 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER B -9 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV SER B -8 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLY B -7 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLU B -6 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV ASN B -5 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV LEU B -4 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV TYR B -3 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV PHE B -2 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV GLN B -1 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV HIS B 0 UNP G8HX37 EXPRESSION TAG SEQADV 7XPV ALA B 228 UNP G8HX37 SER 228 ENGINEERED MUTATION SEQRES 1 A 395 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY GLU SEQRES 2 A 395 ASN LEU TYR PHE GLN HIS MET SER GLY ARG ASP ILE SER SEQRES 3 A 395 THR ALA VAL VAL VAL THR THR ILE SER ASP GLY GLY PHE SEQRES 4 A 395 LEU ASP ARG LEU ALA PRO ALA LEU ARG ASP ALA GLY ALA SEQRES 5 A 395 ARG LEU ILE VAL ILE PRO ASP ARG ASN THR GLY PRO ALA SEQRES 6 A 395 LEU PHE ALA ALA CYS GLU ARG HIS ARG ARG LEU GLY LEU SEQRES 7 A 395 ASP VAL VAL CYS PRO SER VAL ALA GLU GLN GLN ASP LEU SEQRES 8 A 395 LEU GLU ARG LEU ALA VAL PRO ASP LEU ILE PRO TYR HIS SEQRES 9 A 395 SER ASP ASN ARG ARG ASN VAL GLY TYR LEU MET ALA TRP SEQRES 10 A 395 MET GLU GLY PHE ASP VAL ILE VAL SER MET ASP ASP ASP SEQRES 11 A 395 ASN LEU PRO THR THR ASP ASP PHE VAL GLU ARG HIS GLN SEQRES 12 A 395 VAL VAL CYS GLN GLY PRO ARG THR GLN PRO VAL THR ALA SEQRES 13 A 395 SER SER ASP GLY TRP PHE ASN ASN CYS ALA LEU LEU GLU SEQRES 14 A 395 VAL GLU PRO THR GLU VAL PHE PRO ARG GLY PHE PRO PHE SEQRES 15 A 395 HIS ALA ARG PRO ALA HIS ALA GLN ALA ARG THR SER VAL SEQRES 16 A 395 CYS GLU ARG PRO ALA ASP VAL ARG ILE ASN ALA GLY LEU SEQRES 17 A 395 TRP LEU GLY ASP PRO ASP VAL ASP ALA ILE THR ARG LEU SEQRES 18 A 395 ALA VAL ARG PRO ASN ALA LEU ALA HIS SER GLY GLY SER SEQRES 19 A 395 VAL VAL LEU ALA GLU GLY THR TRP CYS PRO VAL ASN ALA SEQRES 20 A 395 GLN ASN THR ALA VAL HIS ARG ASP ALA LEU PRO ALA TYR SEQRES 21 A 395 TYR PHE LEU ARG MET GLY GLN PRO VAL ASP GLY VAL PRO SEQRES 22 A 395 MET GLU ARG PHE GLY ASP ILE PHE SER GLY TYR PHE VAL SEQRES 23 A 395 GLN VAL CYS ALA GLN HIS LEU GLY HIS ALA VAL ARG PHE SEQRES 24 A 395 GLY ASP PRO VAL VAL GLU HIS PRO ARG ASN GLU HIS ASP SEQRES 25 A 395 LEU LEU ASP ASP LEU HIS LYS GLU VAL PRO ALA VAL ARG SEQRES 26 A 395 LEU LEU ASP ASP ILE LEU ASP HIS LEU ARG ASP HIS PRO SEQRES 27 A 395 LEU GLU GLY GLY ASP TYR LEU GLU THR TYR GLU SER LEU SEQRES 28 A 395 SER TYR ALA LEU GLN GLU ILE ALA GLU ARG VAL ASN GLY SEQRES 29 A 395 ARG ALA TRP SER PRO ASP ALA ARG ALA PHE LEU HIS ARG SEQRES 30 A 395 SER ALA HIS LEU MET ARG SER TRP THR GLY ALA LEU ARG SEQRES 31 A 395 THR VAL ALA GLY THR SEQRES 1 B 395 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY GLU SEQRES 2 B 395 ASN LEU TYR PHE GLN HIS MET SER GLY ARG ASP ILE SER SEQRES 3 B 395 THR ALA VAL VAL VAL THR THR ILE SER ASP GLY GLY PHE SEQRES 4 B 395 LEU ASP ARG LEU ALA PRO ALA LEU ARG ASP ALA GLY ALA SEQRES 5 B 395 ARG LEU ILE VAL ILE PRO ASP ARG ASN THR GLY PRO ALA SEQRES 6 B 395 LEU PHE ALA ALA CYS GLU ARG HIS ARG ARG LEU GLY LEU SEQRES 7 B 395 ASP VAL VAL CYS PRO SER VAL ALA GLU GLN GLN ASP LEU SEQRES 8 B 395 LEU GLU ARG LEU ALA VAL PRO ASP LEU ILE PRO TYR HIS SEQRES 9 B 395 SER ASP ASN ARG ARG ASN VAL GLY TYR LEU MET ALA TRP SEQRES 10 B 395 MET GLU GLY PHE ASP VAL ILE VAL SER MET ASP ASP ASP SEQRES 11 B 395 ASN LEU PRO THR THR ASP ASP PHE VAL GLU ARG HIS GLN SEQRES 12 B 395 VAL VAL CYS GLN GLY PRO ARG THR GLN PRO VAL THR ALA SEQRES 13 B 395 SER SER ASP GLY TRP PHE ASN ASN CYS ALA LEU LEU GLU SEQRES 14 B 395 VAL GLU PRO THR GLU VAL PHE PRO ARG GLY PHE PRO PHE SEQRES 15 B 395 HIS ALA ARG PRO ALA HIS ALA GLN ALA ARG THR SER VAL SEQRES 16 B 395 CYS GLU ARG PRO ALA ASP VAL ARG ILE ASN ALA GLY LEU SEQRES 17 B 395 TRP LEU GLY ASP PRO ASP VAL ASP ALA ILE THR ARG LEU SEQRES 18 B 395 ALA VAL ARG PRO ASN ALA LEU ALA HIS SER GLY GLY SER SEQRES 19 B 395 VAL VAL LEU ALA GLU GLY THR TRP CYS PRO VAL ASN ALA SEQRES 20 B 395 GLN ASN THR ALA VAL HIS ARG ASP ALA LEU PRO ALA TYR SEQRES 21 B 395 TYR PHE LEU ARG MET GLY GLN PRO VAL ASP GLY VAL PRO SEQRES 22 B 395 MET GLU ARG PHE GLY ASP ILE PHE SER GLY TYR PHE VAL SEQRES 23 B 395 GLN VAL CYS ALA GLN HIS LEU GLY HIS ALA VAL ARG PHE SEQRES 24 B 395 GLY ASP PRO VAL VAL GLU HIS PRO ARG ASN GLU HIS ASP SEQRES 25 B 395 LEU LEU ASP ASP LEU HIS LYS GLU VAL PRO ALA VAL ARG SEQRES 26 B 395 LEU LEU ASP ASP ILE LEU ASP HIS LEU ARG ASP HIS PRO SEQRES 27 B 395 LEU GLU GLY GLY ASP TYR LEU GLU THR TYR GLU SER LEU SEQRES 28 B 395 SER TYR ALA LEU GLN GLU ILE ALA GLU ARG VAL ASN GLY SEQRES 29 B 395 ARG ALA TRP SER PRO ASP ALA ARG ALA PHE LEU HIS ARG SEQRES 30 B 395 SER ALA HIS LEU MET ARG SER TRP THR GLY ALA LEU ARG SEQRES 31 B 395 THR VAL ALA GLY THR HET GRJ A 401 38 HET MN A 402 1 HET GRJ B 401 38 HET MN B 402 1 HETNAM GRJ [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYL- HETNAM 2 GRJ PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY- HETNAM 3 GRJ OXIDANYL-PHOSPHORYL] [(2~{S},3~{S},4~{S},5~{R})-3,4- HETNAM 4 GRJ BIS(OXIDANYL)-5-[(1~{S})-1-OXIDANYLETHYL]OXOLAN-2-YL] HETNAM 5 GRJ HYDROGEN PHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 GRJ 2(C16 H25 N5 O15 P2) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *230(H2 O) HELIX 1 AA1 PHE A 20 ASP A 30 1 11 HELIX 2 AA2 PRO A 45 ARG A 56 1 12 HELIX 3 AA3 SER A 65 LEU A 76 1 12 HELIX 4 AA4 SER A 86 ASN A 88 5 3 HELIX 5 AA5 ARG A 89 GLU A 100 1 12 HELIX 6 AA6 ASP A 118 GLN A 124 1 7 HELIX 7 AA7 VAL A 125 GLN A 128 5 4 HELIX 8 AA8 ASN A 144 ALA A 147 5 4 HELIX 9 AA9 PRO A 162 ARG A 166 5 5 HELIX 10 AB1 ASP A 197 VAL A 204 1 8 HELIX 11 AB2 ALA A 237 TYR A 241 5 5 HELIX 12 AB3 PHE A 258 LEU A 274 1 17 HELIX 13 AB4 ASP A 293 ARG A 316 1 24 HELIX 14 AB5 ASP A 324 VAL A 343 1 20 HELIX 15 AB6 SER A 349 ALA A 374 1 26 HELIX 16 AB7 PHE B 20 ASP B 30 1 11 HELIX 17 AB8 PRO B 45 LEU B 57 1 13 HELIX 18 AB9 SER B 65 LEU B 76 1 12 HELIX 19 AC1 SER B 86 ASN B 88 5 3 HELIX 20 AC2 ARG B 89 GLU B 100 1 12 HELIX 21 AC3 ASP B 118 GLN B 124 1 7 HELIX 22 AC4 VAL B 125 GLN B 128 5 4 HELIX 23 AC5 ASN B 144 ALA B 147 5 4 HELIX 24 AC6 ARG B 166 ALA B 172 5 7 HELIX 25 AC7 ASP B 197 ARG B 205 1 9 HELIX 26 AC8 ALA B 237 TYR B 241 5 5 HELIX 27 AC9 PHE B 258 LEU B 274 1 17 HELIX 28 AD1 ASP B 293 ARG B 316 1 24 HELIX 29 AD2 ASP B 324 VAL B 343 1 20 HELIX 30 AD3 SER B 349 ALA B 374 1 26 SHEET 1 AA1 8 ASP A 60 VAL A 62 0 SHEET 2 AA1 8 ARG A 34 ILE A 38 1 N VAL A 37 O VAL A 62 SHEET 3 AA1 8 THR A 8 THR A 13 1 N VAL A 10 O ARG A 34 SHEET 4 AA1 8 VAL A 104 MET A 108 1 O VAL A 106 N VAL A 11 SHEET 5 AA1 8 ASN A 230 HIS A 234 -1 O THR A 231 N SER A 107 SHEET 6 AA1 8 THR A 174 GLY A 192 -1 N GLY A 188 O ASN A 230 SHEET 7 AA1 8 ALA A 277 HIS A 287 1 O ARG A 279 N ILE A 185 SHEET 8 AA1 8 PRO A 130 SER A 138 0 SHEET 1 AA2 4 LEU A 113 PRO A 114 0 SHEET 2 AA2 4 ALA A 277 HIS A 287 -1 O GLU A 286 N LEU A 113 SHEET 3 AA2 4 THR A 174 GLY A 192 1 N ILE A 185 O ARG A 279 SHEET 4 AA2 4 VAL A 216 VAL A 217 0 SHEET 1 AA3 2 LEU A 149 GLU A 152 0 SHEET 2 AA3 2 ASN A 207 HIS A 211 -1 O LEU A 209 N GLU A 150 SHEET 1 AA4 2 PRO A 249 VAL A 250 0 SHEET 2 AA4 2 VAL A 253 PRO A 254 -1 O VAL A 253 N VAL A 250 SHEET 1 AA5 8 ASP B 60 VAL B 62 0 SHEET 2 AA5 8 ARG B 34 ILE B 38 1 N VAL B 37 O VAL B 62 SHEET 3 AA5 8 THR B 8 THR B 13 1 N VAL B 10 O ARG B 34 SHEET 4 AA5 8 VAL B 104 MET B 108 1 O VAL B 106 N VAL B 11 SHEET 5 AA5 8 ASN B 230 HIS B 234 -1 O THR B 231 N SER B 107 SHEET 6 AA5 8 THR B 174 GLY B 192 -1 N GLY B 188 O ASN B 230 SHEET 7 AA5 8 ALA B 277 HIS B 287 1 O ARG B 279 N ALA B 187 SHEET 8 AA5 8 PRO B 130 SER B 138 0 SHEET 1 AA6 4 LEU B 113 PRO B 114 0 SHEET 2 AA6 4 ALA B 277 HIS B 287 -1 O GLU B 286 N LEU B 113 SHEET 3 AA6 4 THR B 174 GLY B 192 1 N ALA B 187 O ARG B 279 SHEET 4 AA6 4 VAL B 216 VAL B 217 0 SHEET 1 AA7 2 LEU B 149 GLU B 152 0 SHEET 2 AA7 2 ASN B 207 HIS B 211 -1 O LEU B 209 N GLU B 150 SHEET 1 AA8 2 PRO B 249 VAL B 250 0 SHEET 2 AA8 2 VAL B 253 PRO B 254 -1 O VAL B 253 N VAL B 250 LINK OD2 ASP A 111 MN MN A 402 1555 1555 2.03 LINK NE2 HIS A 287 MN MN A 402 1555 1555 2.51 LINK O2 GRJ A 401 MN MN A 402 1555 1555 2.58 LINK O6 GRJ A 401 MN MN A 402 1555 1555 1.85 LINK OD1 ASP B 111 MN MN B 402 1555 1555 2.73 LINK OD2 ASP B 111 MN MN B 402 1555 1555 2.05 LINK NE2 HIS B 287 MN MN B 402 1555 1555 2.43 LINK O2 GRJ B 401 MN MN B 402 1555 1555 2.48 LINK O6 GRJ B 401 MN MN B 402 1555 1555 1.96 CISPEP 1 GLU A 152 PRO A 153 0 2.93 CISPEP 2 ASP A 282 PRO A 283 0 -0.92 CISPEP 3 GLU B 152 PRO B 153 0 1.84 CISPEP 4 ASP B 282 PRO B 283 0 0.60 CRYST1 98.135 162.670 114.927 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010190 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008701 0.00000