HEADER TRANSCRIPTION/DNA 10-MAY-22 7XRC TITLE CRYSTAL STRUCTURE OF THE DIMERIC BRN2 (POU3F2) POU DOMAIN BOUND TO TITLE 2 PALINDROMIC MORE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: POU DOMAIN PROTEIN; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MORE PALINDROMIC OCT FACTOR RECOGNITION ELEMENT (MORE); COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MORE PALINDROMIC OCT FACTOR RECOGNITION ELEMENT (MORE); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS; SOURCE 3 ORGANISM_TAXID: 10088; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETG-41A; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS POU FAMILY, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.S.Y.TAN,R.JAUCH REVDAT 5 29-NOV-23 7XRC 1 REMARK REVDAT 4 08-MAR-23 7XRC 1 JRNL REVDAT 3 15-FEB-23 7XRC 1 JRNL REVDAT 2 08-FEB-23 7XRC 1 JRNL REVDAT 1 15-JUN-22 7XRC 0 JRNL AUTH D.S.TAN,S.L.CHEUNG,Y.GAO,M.WEINBUCH,H.HU,L.SHI,S.C.TI, JRNL AUTH 2 A.P.HUTCHINS,V.COJOCARU,R.JAUCH JRNL TITL THE HOMEODOMAIN OF OCT4 IS A DIMERIC BINDER OF METHYLATED JRNL TITL 2 CPG ELEMENTS. JRNL REF NUCLEIC ACIDS RES. V. 51 1120 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36631980 JRNL DOI 10.1093/NAR/GKAC1262 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 19676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3500 - 3.6100 0.95 2717 144 0.1605 0.1669 REMARK 3 2 3.6100 - 2.8700 0.97 2702 140 0.1994 0.2704 REMARK 3 3 2.8700 - 2.5100 0.95 2647 140 0.2186 0.2376 REMARK 3 4 2.5100 - 2.2800 0.97 2710 141 0.2385 0.2967 REMARK 3 5 2.2800 - 2.1100 0.94 2592 137 0.2881 0.3429 REMARK 3 6 2.1100 - 1.9900 0.96 2643 140 0.3294 0.3420 REMARK 3 7 1.9900 - 1.8900 0.96 2682 141 0.4267 0.4629 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.364 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1567 REMARK 3 ANGLE : 1.188 2199 REMARK 3 CHIRALITY : 0.059 248 REMARK 3 PLANARITY : 0.012 207 REMARK 3 DIHEDRAL : 25.010 344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7903 -14.4498 37.7470 REMARK 3 T TENSOR REMARK 3 T11: 0.6126 T22: 0.6601 REMARK 3 T33: 0.4895 T12: 0.0302 REMARK 3 T13: -0.0350 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 8.1337 L22: 0.8521 REMARK 3 L33: 1.3968 L12: -0.6053 REMARK 3 L13: -2.4848 L23: -0.0860 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -1.1179 S13: -0.4387 REMARK 3 S21: 0.4933 S22: 0.1541 S23: -0.3978 REMARK 3 S31: 0.7024 S32: 0.5796 S33: -0.1468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 268 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2031 -1.8935 30.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.3992 T22: 0.4532 REMARK 3 T33: 0.5455 T12: -0.0112 REMARK 3 T13: 0.0311 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 4.8749 L22: 5.4442 REMARK 3 L33: 5.4264 L12: 1.3993 REMARK 3 L13: 0.4898 L23: 0.3094 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.2909 S13: 0.5794 REMARK 3 S21: -0.3564 S22: -0.0648 S23: 0.1658 REMARK 3 S31: -0.5408 S32: -0.2251 S33: -0.0632 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 288 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6100 -9.5421 31.4801 REMARK 3 T TENSOR REMARK 3 T11: 0.3680 T22: 0.4187 REMARK 3 T33: 0.4460 T12: 0.0148 REMARK 3 T13: -0.0073 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 4.9849 L22: 6.1342 REMARK 3 L33: 5.0312 L12: -1.0407 REMARK 3 L13: -0.2734 L23: -1.1834 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.1037 S13: 0.1118 REMARK 3 S21: 0.2585 S22: 0.0107 S23: -0.4488 REMARK 3 S31: -0.0108 S32: 0.2094 S33: -0.0876 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0761 -13.2210 12.7169 REMARK 3 T TENSOR REMARK 3 T11: 0.4794 T22: 0.7250 REMARK 3 T33: 0.4924 T12: 0.0175 REMARK 3 T13: 0.1122 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 7.7412 L22: 4.8722 REMARK 3 L33: 6.7976 L12: 1.0556 REMARK 3 L13: -3.7915 L23: -0.2014 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: 1.0077 S13: 0.1091 REMARK 3 S21: -0.6413 S22: 0.0467 S23: -0.3832 REMARK 3 S31: 0.3022 S32: 0.2037 S33: -0.2238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 202 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7585 -13.0374 15.1591 REMARK 3 T TENSOR REMARK 3 T11: 0.5236 T22: 0.6362 REMARK 3 T33: 0.4395 T12: 0.0571 REMARK 3 T13: 0.1323 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 2.3129 L22: 2.0417 REMARK 3 L33: 3.1853 L12: 0.7314 REMARK 3 L13: 1.2233 L23: 1.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: 0.8169 S13: 0.2958 REMARK 3 S21: -0.2447 S22: 0.1054 S23: -0.4112 REMARK 3 S31: 0.2882 S32: 0.4223 S33: 0.1020 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 506 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7329 -29.0561 7.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.9942 T22: 0.9376 REMARK 3 T33: 0.8238 T12: -0.2132 REMARK 3 T13: 0.1087 T23: -0.2040 REMARK 3 L TENSOR REMARK 3 L11: 3.8394 L22: 8.1701 REMARK 3 L33: 5.8134 L12: -0.3949 REMARK 3 L13: 0.9338 L23: 2.1224 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: 2.3948 S13: -1.5680 REMARK 3 S21: -0.7053 S22: -0.0197 S23: -0.0157 REMARK 3 S31: 1.3880 S32: -0.4380 S33: 0.2180 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 542 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2358 -23.0083 14.7646 REMARK 3 T TENSOR REMARK 3 T11: 0.7951 T22: 0.7108 REMARK 3 T33: 0.7025 T12: -0.0461 REMARK 3 T13: 0.1256 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 7.4461 L22: 3.7897 REMARK 3 L33: 4.5119 L12: -0.6789 REMARK 3 L13: 5.3213 L23: -1.0843 REMARK 3 S TENSOR REMARK 3 S11: 0.3613 S12: 0.4259 S13: -0.3496 REMARK 3 S21: -0.4525 S22: -0.1372 S23: -0.0648 REMARK 3 S31: 1.2413 S32: -0.3009 S33: -0.1497 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 47.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: 2XSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%PEG 4000,MAGNESIUM CHLORIDE, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.67458 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.81828 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 239 REMARK 465 ASP C 240 REMARK 465 PRO C 241 REMARK 465 HIS C 242 REMARK 465 SER C 243 REMARK 465 ASP C 244 REMARK 465 GLU C 245 REMARK 465 SER C 486 REMARK 465 GLY C 487 REMARK 465 SER C 488 REMARK 465 PRO C 489 REMARK 465 THR C 490 REMARK 465 SER C 491 REMARK 465 ILE C 492 REMARK 465 ASP C 493 REMARK 465 LYS C 494 REMARK 465 ILE C 495 REMARK 465 ALA C 496 REMARK 465 ALA C 497 REMARK 465 GLN C 498 REMARK 465 GLY C 499 REMARK 465 ARG C 500 REMARK 465 LYS C 501 REMARK 465 ARG C 502 REMARK 465 LYS C 503 REMARK 465 LYS C 504 REMARK 465 ARG C 505 REMARK 465 GLY C 564 REMARK 465 THR C 565 REMARK 465 LEU C 566 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 201 O5' REMARK 470 DA B 212 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA B 212 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 212 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 202 O3' DC B 202 C3' -0.037 REMARK 500 DT B 211 O3' DT B 211 C3' -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 298 46.79 -88.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XSD RELATED DB: PDB REMARK 900 FAMILY PROTEIN REMARK 900 RELATED ID: 1E3O RELATED DB: PDB REMARK 900 FAMILY PROTEIN DBREF1 7XRC C 239 566 UNP A0A6I8N999_ORNAN DBREF2 7XRC C A0A6I8N999 197 360 DBREF 7XRC A 201 211 PDB 7XRC 7XRC 201 211 DBREF 7XRC B 202 212 PDB 7XRC 7XRC 202 212 SEQRES 1 C 164 GLY ASP PRO HIS SER ASP GLU ASP THR PRO THR SER ASP SEQRES 2 C 164 ASP LEU GLU GLN PHE ALA LYS GLN PHE LYS GLN ARG ARG SEQRES 3 C 164 ILE LYS LEU GLY PHE THR GLN ALA ASP VAL GLY LEU ALA SEQRES 4 C 164 LEU GLY THR LEU TYR GLY ASN VAL PHE SER GLN THR THR SEQRES 5 C 164 ILE CYS ARG PHE GLU ALA LEU GLN LEU SER PHE LYS ASN SEQRES 6 C 164 MET CYS LYS LEU LYS PRO LEU LEU ASN LYS TRP LEU GLU SEQRES 7 C 164 GLU ALA ASP SER SER SER GLY SER PRO THR SER ILE ASP SEQRES 8 C 164 LYS ILE ALA ALA GLN GLY ARG LYS ARG LYS LYS ARG THR SEQRES 9 C 164 SER ILE GLU VAL SER VAL LYS GLY ALA LEU GLU SER HIS SEQRES 10 C 164 PHE LEU LYS CYS PRO LYS PRO SER ALA GLN GLU ILE THR SEQRES 11 C 164 SER LEU ALA ASP SER LEU GLN LEU GLU LYS GLU VAL VAL SEQRES 12 C 164 ARG VAL TRP PHE CYS ASN ARG ARG GLN LYS GLU LYS ARG SEQRES 13 C 164 MET THR PRO PRO GLY GLY THR LEU SEQRES 1 A 11 DA DT DG DC DA DT DG DA DG DG DA SEQRES 1 B 11 DC DC DT DC DA DT DG DC DA DT DA FORMUL 4 HOH *70(H2 O) HELIX 1 AA1 THR C 249 GLY C 268 1 20 HELIX 2 AA2 THR C 270 GLY C 283 1 14 HELIX 3 AA3 SER C 287 ALA C 296 1 10 HELIX 4 AA4 SER C 300 ASP C 319 1 20 HELIX 5 AA5 GLU C 509 CYS C 523 1 15 HELIX 6 AA6 SER C 527 LEU C 538 1 12 HELIX 7 AA7 GLU C 541 LYS C 557 1 17 CRYST1 94.350 50.630 69.310 90.00 129.06 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010599 0.000000 0.008601 0.00000 SCALE2 0.000000 0.019751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018581 0.00000